KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:51:07 2014 Check: 00 .. Name: ENSBTAP00000040857/1-468 Len: 736 Check: 1685 Weight: 1.00 Name: BACU003301/1-733 Len: 736 Check: 8763 Weight: 1.00 Name: bmy_14986T0/1-431 Len: 736 Check: 6297 Weight: 1.00 Name: ENSTTRP00000009228/1-412 Len: 736 Check: 2537 Weight: 1.00 // 1 50 ENSBTAP00000040857/1-468 ME-------- ---------- ---------- ---------- ---------- BACU003301/1-733 MEDKKKKRSP KPCLTQPAQP PGTLRRVPVP TSHSGSLALG LPHLPSPKQR bmy_14986T0/1-431 ME-------- ---------- ---------- ---------- ---------- ENSTTRP00000009228/1-412 ME-------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000040857/1-468 ---------- ---------- ------RERL ---------- ---------- BACU003301/1-733 AKFKRADRCC PGKECSFEQL EHVREMQEKL ARLHFSLDVC GEEEEEEEEE bmy_14986T0/1-431 ---------- ---------- ------RERL ---------- ---------- ENSTTRP00000009228/1-412 ---------- ---------- ------RERL ---------- ---------- 101 150 ENSBTAP00000040857/1-468 ---------- ------VLKV TAL--QACIR GFLVRRQFQS LRGEYEAIVQ BACU003301/1-733 DGVTGGLPEE QKKTMADRNL DQLLSNACVR GFLVRRQFQS LRAEYEAIVR bmy_14986T0/1-431 ---------- ------DRKV TVL--QACVR GFLVRRQFQS LRAEYEAIVR ENSTTRP00000009228/1-412 ---------- ------DREV TAL--QACVR GFLVRRQFQS LRAEYEAIVR 151 200 ENSBTAP00000040857/1-468 EIEGDLGTLQ WTEGWIPRPR FLPKKAKSCQ TWKATGERAP NPEQELWSRF BACU003301/1-733 EIEGDLGTLQ WTEGWIPRPR FLPKKAKSHQ TWKA-GERVP NPEQELWSCF bmy_14986T0/1-431 EIEGDLGTLQ WTEGWIPRPR FLPKKAKSHQ TWKA-GERVP NPEQELWSCF ENSTTRP00000009228/1-412 EIEGDLGTLQ WTEGWIPRPR FLPKKAKSHQ TWKA-GERVP NPEQELWSCF 201 250 ENSBTAP00000040857/1-468 ACKETEKETI REDMILKKSG ESFTNASSLP CRDASAWSQD EQSRRTGKPS BACU003301/1-733 PCKEPEKEAI WEEKILKKSG ESSANSGSLP CRDDSPWLQD EQSRRTRKPS bmy_14986T0/1-431 PCKEPEKEAI WEEXILKKSG ESSANSG--- ---------- ---------- ENSTTRP00000009228/1-412 PCKEPEKEAI WEEMILKKSG ESAANSGSLP CRDDSPWLQD EQSRRTRKPS 251 300 ENSBTAP00000040857/1-468 Q-ETRDVSRM NDPEAAGPGL FHSQTELQEL QNHRSHLAME LLWLQQAINS BACU003301/1-733 QEETRDMSKM ENTEAAGPGL PHSQTELQEL QYHRSHLAME LLWLQQAINS bmy_14986T0/1-431 ---------- ---KAAGPGL PHSQTELQEL QYHRSHLAME LLWLQQAINS ENSTTRP00000009228/1-412 QEETRDMSKM ENPEAAGPGL PHSQTELQEL QYHRSHLAME LLWLQQAINS 301 350 ENSBTAP00000040857/1-468 RKEYLVLKQT LRSPEVNQNR HEPSLCQDHG GQSCEKAGSQ PGPPLEDQPY BACU003301/1-733 RKEYLILKQT LRSPEANQAR DEPSLCPDHG GQGCEKAGSR PGPPLEDQSY bmy_14986T0/1-431 RKEYLILKQT LRSPEANQAR DEPSLCPDHG GQGCEKAGSR PGPPLEDQSY ENSTTRP00000009228/1-412 RKEYLILKQT LRSPEANQAR DEPSLCADHG GQGCEKAGSR PGPPLEDQSY 351 400 ENSBTAP00000040857/1-468 RGRTPGEPGH VDASCWRLRS QAHKFPEGLA TPDKITAGAK YRDPSYRWPG BACU003301/1-733 --RTTREPDH VDDSCWRLRS QPHKTPEILA TTDKTTAGAK YRDLCYRQAG bmy_14986T0/1-431 --RTTREPDH VDDSCWRLRS QPHKTPEILA TTDKTTAGAK YRDLCYRQAG ENSTTRP00000009228/1-412 --RTTREPDH MDDSCWRLRS QPHKTPEILA TTDKTTAGAK YRDLCYRQTG 401 450 ENSBTAP00000040857/1-468 PQLPTLSEYQ ATGKRLTKEL DCGEEISGET CLQLTTLLED ESHKELKSKG BACU003301/1-733 PQLPTPLDNQ AIGKRLTKEP ECGEQTFGGT CLQLTKLLED ETHRGLKSRG bmy_14986T0/1-431 PQLPTPSDNQ AIGKRLTKDP ECGEQTFGGT CLQLTKLLED ETHKGLKSRG ENSTTRP00000009228/1-412 PQLPTPWDNQ AIGKRLTKEP QCGEQTYGGT CLQLTKLLED ETHKGLKSRG 451 500 ENSBTAP00000040857/1-468 SCPGKARTQL PTLHKDPNIE DNSPRGPCPK ELDWQRAVPQ ELGVSEDHVT BACU003301/1-733 YCSGKARTQL PTLREDPDIE DNSPRGPGQK DPDCQRAGPQ ELGLSEDHVI bmy_14986T0/1-431 YCSGKARTQL PTLREDPDIE DNSPRGPGQK EPDCXRAGPR ELGLSEDHVI ENSTTRP00000009228/1-412 CCSGKARTQL PTLCEDPDVE DNSPRGQAQK ERDCQRAGAR ELGLSEDRVI 501 550 ENSBTAP00000040857/1-468 WDGSLAEHGG LDLWKNKPPK GQTPSDKSSI ERS------- ---------- BACU003301/1-733 CDGTLADHGG LDLWKTKPPK GQTPSDKSST GHQLVVTQRC FPTLETFLCE bmy_14986T0/1-431 CDGTLAEHGG LDLWKTKPPK GQTPSDKSST GRT------- ---------- ENSTTRP00000009228/1-412 CDGTF-EHGG LSLWKAKPPE GRTPSDSS-- ---------- ---------- 551 600 ENSBTAP00000040857/1-468 ---------- ---------- ---------- ---------- ---------- BACU003301/1-733 VTSAVQAPLA VRALYMSCHG HPVTDLADLQ NGGQYVAAGF ERFRKLPVFR bmy_14986T0/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009228/1-412 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000040857/1-468 ---------- --PSESSHEG WQN-----QR AVPFRSRPPE KLS-TG---- BACU003301/1-733 NGDLLSPPFS LKLSQAASKD WEAVLKLLTE KVKLQTRAAR KLCTLDGLPL bmy_14986T0/1-431 ---------- --FNESSHEX XKN-----QR TIPWRSRPPE KLSSTG---- ENSTTRP00000009228/1-412 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000040857/1-468 ---------- ---------- --------SG HTGEDHW--- --RGRQWKTG BACU003301/1-733 SAREALVSGH YYVAVGEDGS RPSPIWCLAP HCPGGCWQPP DLKSRLHKQG bmy_14986T0/1-431 ---------- ---------- --------SD HTGEDHW--- --RGRLWKTG ENSTTRP00000009228/1-412 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000040857/1-468 PAG------- ---------- ---------- ------ BACU003301/1-733 RAAQVVEEAL ILESRPELGQ LSRPRPGPLL RHLESQ bmy_14986T0/1-431 PPG------- ---------- ---------- ------ ENSTTRP00000009228/1-412 ---------- ---------- ---------- ------