KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:09 2014 Check: 00 .. Name: ENSTTRP00000000200/1-622 Len: 716 Check: 4110 Weight: 1.00 Name: bmy_06712T0/1-676 Len: 716 Check: 7745 Weight: 1.00 Name: ENSBTAP00000040887/1-600 Len: 716 Check: 8723 Weight: 1.00 Name: ENSP00000268933/1-632 Len: 716 Check: 1462 Weight: 1.00 Name: BACU018343/1-636 Len: 716 Check: 3511 Weight: 1.00 // 1 50 ENSTTRP00000000200/1-622 MTTSALRRQV KNIVHNYSEA EIKVREATSN DPWGPPSSLM SEIADLTFNT bmy_06712T0/1-676 MTTSALRRQV KNIVHSYSEA EIKVREATSN DPWGPPSSLM SEIADLTFNT ENSBTAP00000040887/1-600 MTTSALRRQV KNIVHNYSEA EIKVREATSN DPWGPPSSLM SEIADLTFNT ENSP00000268933/1-632 MTTSALRRQV KNIVHNYSEA EIKVREATSN DPWGPPSSLM SEIADLTFNT BACU018343/1-636 MTTSALRRQV KNIVHNYSEA EIKVREATSN DPWGPPSSLM SEIADLTFNT 51 100 ENSTTRP00000000200/1-622 VAFAEVMGML WRRLNDSGKN WRHVYKALTL LDYLLKTGSE RVAHQCRENL bmy_06712T0/1-676 VAFAEVMGML WRRLNDSGKN WRHVYKALTL LDYLLKTGSE RVAHQCRENL ENSBTAP00000040887/1-600 VAFAEVMGML WRRLNDSGKN WRHVYKALTL LDYLLKTGSE RVAHQCRENL ENSP00000268933/1-632 VAFTEVMGML WRRLNDSGKN WRHVYKALTL LDYLLKTGSE RVAHQCRENL BACU018343/1-636 VAFAEVMGML WRRLNDSGKN WRHVYKALTL LDYLLKTGSE RVAHQCRENL 101 150 ENSTTRP00000000200/1-622 YTIQTLKDFQ YIDRDGKDQG VNVREKVKQV VALLKDEERL RQERTHALKT bmy_06712T0/1-676 YTIQTLKDFQ YIDRDGKDQG VNVREKVKQV MALLKDEERL RQERTHALKT ENSBTAP00000040887/1-600 YTIQTLKDFQ YVDRDGKDQG VNVREKVKQV MALLKDEERL RQERTHALKT ENSP00000268933/1-632 YTIQTLKDFQ YIDRDGKDQG VNVREKVKQV MALLKDEERL RQERTHALKT BACU018343/1-636 YTIQTLKDFQ YIDRDGKDQG VNVREKVKQV MALLKDEERL RQERTHALKT 151 200 ENSTTRP00000000200/1-622 KERMALEGTG IGSGQLGF-- ------SRAR GSPSSYNS-- ---------- bmy_06712T0/1-676 KERMALEGTG IGSGQLGF-- ------SRAR GSPSSYNSSW QEGGGGAYGY ENSBTAP00000040887/1-600 KERMALEGTG ISSGQLGL-- ------SRTR GSPSSYNS-- ---------- ENSP00000268933/1-632 KERMALEGIG IGSGQLGFSR RYGEDYSRSR GSPSSYNS-- ---------- BACU018343/1-636 KERMALEGTG IGSGQLGF-- ------SRAR GSPSSYNS-- ---------- 201 250 ENSTTRP00000000200/1-622 ---------- -----SSSSP RYTSDLEQAR PQTSGEEELQ LQLALAMSRE bmy_06712T0/1-676 LCGYGSHDGW LVVAASSSSP RYTSDLEQAR PQTSGEEELQ LQLALAMSRE ENSBTAP00000040887/1-600 ---------- -----SSSSP RYTSDLEQAR PQTSGEEELQ LQLALAMSRE ENSP00000268933/1-632 ---------- -----SSSSP RYTSDLEQAR PQTSGEEELQ LQLALAMSRE BACU018343/1-636 ---------- -----SSSSP RYTSDLEQAR PQTSGEEELQ LQLALAMSRE 251 300 ENSTTRP00000000200/1-622 EAEKPVPPAS HRDEDLQLQL ALHLSRQE-Q KEVRSWRGDD SPVANGAGAG bmy_06712T0/1-676 EAEKPVPPAS HRDEDLQLQL ALHLSQQEQE KVSGPTQS-- -PVARPGGL- ENSBTAP00000040887/1-600 EA-------- ---------- ---------E KEVRSWQGDD SPVANGAGAG ENSP00000268933/1-632 EAEKPVPPAS HRDEDLQLQL ALRLSRQEHE KEVRSWQGDG SPMANGAGAV BACU018343/1-636 EAEKPVPPAS HRDEDLQLQL ALHLSRQEQE KEVRSWRGDD SPVANGAGAG 301 350 ENSTTRP00000000200/1-622 PHRRRDREPE REE-REEEKL KTTQSSILDL VDIFAPAPAL PSTHCSADPW bmy_06712T0/1-676 ------RQTP GLQSAQEASC PKANPGTCPL CSPPLSPGAG PQRHLLGHPP ENSBTAP00000040887/1-600 AHRRWDREPE RAE-REEEKL KTSQSSSLDL VDIFASASTL PSTHCSADPW ENSP00000268933/1-632 VHHQRDREPE REERKEEEKL KTSQSSILDL ADIFVPALAP PSTHCSADPW BACU018343/1-636 PHRRRDREPE REE-TEEEKL KTSQSSILDL VDIFAPAPAL PSTHCSADPW 351 400 ENSTTRP00000000200/1-622 DIPGLRP--- ------STEP SGSSWGPSAD PWSPVRSGSI LSQSQPW-NL bmy_06712T0/1-676 QTPGHRPPPT TNSPTLGPTP GGPRWRPPTH LVSGGPGGVG EGLEDCWVPL ENSBTAP00000040887/1-600 DIPGLRP--- ------NTEP SGSSWGPSAD PWSPVPSGSI MSQSQPW-DL ENSP00000268933/1-632 DIPGFRP--- ------NTEA SGSSWGPSAD PWSPIPSGTV LSRSQPW-DL BACU018343/1-636 DIPGLRP--- ------NTEP SGSSWGPSAD PWSPVRSGSI LSQSQPW-NL 401 450 ENSTTRP00000000200/1-622 PPMLSSSEP- WGRTPVPPAG PPPTDSWAQN SPRHKLLNTG ADPWGALVET bmy_06712T0/1-676 PPVPRGKRSC VKRAACLERD QPSACPFA-N PSHLPFP--- --PWLV---- ENSBTAP00000040887/1-600 PPVLSSSEP- WGRTPVLPAG PPTTDFWAQN SPHHKLPNNG AKPWGNLVET ENSP00000268933/1-632 TPMLSSSEP- WGRTPVLPAG PPTTDPWALN SPHHKLPSTG ADPWGASLET BACU018343/1-636 PPMFSSSEP- WGRTPAPPAG PPPTDSWAQT SPHHKLPNTG ADPWGASVET 451 500 ENSTTRP00000000200/1-622 SNTPXXXXXX XXXXXXXXXX XXXXXX---- -----XXXXX XXXXXXXXXX bmy_06712T0/1-676 --------LD GTSTFDPFAK PPVSTE-TKE GLECAQALPS GKPSSPVELD ENSBTAP00000040887/1-600 FNTPA---LD GSSTFDPLAK PPVSTE-TKE GLECTQALPS GKPSSPVELD ENSP00000268933/1-632 SDTPG----- GASTFDPFAK PPESTE-TKE GLE--QALPS GKPSSPVELD BACU018343/1-636 SDTPGKWRAR GCGSGERGAH PELASAFFLS QRDHSLSLSV SSIISIPELD 501 550 ENSTTRP00000000200/1-622 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06712T0/1-676 LFGDLDPSSK QNGTKEPDAF DLDVLGEALT QPSKDTPARR TPESFLGPSA ENSBTAP00000040887/1-600 LFGDHTPSVK QNGTKEPDAF DLDVLGEALA QSSRDTPARR TPESFLGPSA ENSP00000268933/1-632 LFGDPSPSSK QNGTKEPDAL DLGILGEALT QPSKEARACR TPESFLGPSA BACU018343/1-636 LFGDLDPSSK QNGTKEPDAF DLDVLGEALT QPSKDTPARR TPESFLGPSA 551 600 ENSTTRP00000000200/1-622 XXXXXXXXXX XXXXXXXXXX XXXX------ ---------- ---------- bmy_06712T0/1-676 SSLVNLDSLV KAPQAAKTRN PFLTDPRSCH LAPSPLRALC PWPAPSPPTQ ENSBTAP00000040887/1-600 SSLVNLDSLV KVPQAVKTRN PFLT------ ---------- ---------- ENSP00000268933/1-632 SSLVNLDSLV KAPQVAKTRN PFLT------ ---------- ---------- BACU018343/1-636 SSLVNLDSLV KAPQAAKTRN PFLT------ ---------- ---------- 601 650 ENSTTRP00000000200/1-622 ----XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06712T0/1-676 SRSAGFSTPS PTNPFGVGDQ GRPTLNQMRT GSPALGLAAG GPVG---GSM ENSBTAP00000040887/1-600 ----GLSTPS PTNPFGGGDQ SRRTLNQMRT GSPALSLTAG GPIGAPFGSM ENSP00000268933/1-632 ----GLSAPS PTNPFGAGEP GRPTLNQMRT GSPALGL-AG GPVGAPLGSM BACU018343/1-636 ----GFSTPS PTNPFGGGDQ GRPTLNQMRT GSPALGLAAG GPVG---GSM 651 700 ENSTTRP00000000200/1-622 XXXASLPLPL SSVPASVTLP ASVSVFPQAR ASL------- PQPLLPISGS bmy_06712T0/1-676 TYSASLPLPL SSVPAGVTLP ASVSVFPQAR PFTPPSPGSL PQPLPPTSGS ENSBTAP00000040887/1-600 TYSASLPLPL SSVPAGVTLP ASVSVSPKPA PSR------- HRPPGACHSL ENSP00000268933/1-632 TYSASLPLPL SSVPAGLTLP ASVSVFPQAG AFA------- PQPLLPTPSS BACU018343/1-636 TYSASLPLPL SSVPAGVTLP ASVSVFPQAR PFTPPSPGSL PQPLLPTSGS 701 750 ENSTTRP00000000200/1-622 AGLLNQPPQA STNPFL bmy_06712T0/1-676 AGLLNHPPQA GTNPFL ENSBTAP00000040887/1-600 CCPPRVPPDR STRPL- ENSP00000268933/1-632 AGPRPPPPQT GTNPFL BACU018343/1-636 AGLLNQPPQA STNPFL