KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:11 2014 Check: 00 .. Name: ENSTTRP00000002078/1-710 Len: 985 Check: 2413 Weight: 1.00 Name: BACU008282/1-981 Len: 985 Check: 8269 Weight: 1.00 Name: bmy_14013T0/1-481 Len: 985 Check: 7417 Weight: 1.00 Name: ENSP00000471502/1-713 Len: 985 Check: 5953 Weight: 1.00 Name: ENSBTAP00000040907/1-711 Len: 985 Check: 9926 Weight: 1.00 // 1 50 ENSTTRP00000002078/1-710 MARARGSPCP PLPPSRMSWP HGALLFLWLF SPPLGAGXXX XXXXXXXXXX BACU008282/1-981 MARARGSPCP PLPPSRMSWP HGALLFLWLF SPPLGGGGGG VGGTSAAGGG bmy_14013T0/1-481 MARARGSPCP PLPPSRMSWP HGALLFLWLF SPPLGAGGGG VAGTSAAGGG ENSP00000471502/1-713 MARARGSPCP PLPPGRMSWP HGALLFLWLF SPPLGAGGGG VAVTSAAGGG ENSBTAP00000040907/1-711 MARARGSLCP PLPPGRMSWP HGALLFLWLF SPPLGAGGGG MAVTSAAGGG 51 100 ENSTTRP00000002078/1-710 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV BACU008282/1-981 SPPATSCPAA CSCSNQASRV ICTRRELAEV PASIPVNTRY LNLQENGIQV bmy_14013T0/1-481 SPPATSCPAA CSCSNQASRV ICTRRELAEV PASIPVNTRY LNLQENGIQV ENSP00000471502/1-713 SPPATSCPVA CSCSNQASRV ICTRRDLAEV PASIPVNTRY LNLQENGIQV ENSBTAP00000040907/1-711 APPATSCPAA CSCSNQASRV ICTRRELAEV PASIPVNTRY LNLQENGIQV 101 150 ENSTTRP00000002078/1-710 IRTDT-KHLR HLEILQLSKN LVRKIEVG-F NGLPSLNTLE LFDNRLTTVP BACU008282/1-981 IRTDTFKHLR HLEILQLSKN LVRKIEVGAF NGLPSLNTLE LFDNRLTTVP bmy_14013T0/1-481 IRTDTFKHLR HLEILQLSKN LVRKIEVGAF NGLPSLNTLE LFDNRLTTVP ENSP00000471502/1-713 IRTDTFKHLR HLEILQLSKN LVRKIEVGAF NGLPSLNTLE LFDNRLTTVP ENSBTAP00000040907/1-711 IRTDTFKHLR HLEILQLSKN LVRKIEVGAF NGLPSLNTLE LFDNRLTTVP 151 200 ENSTTRP00000002078/1-710 TQAFEYLSKL RELWLRNNPI ESIPSYAFNR VPSLRRLDLG ELKRLEYISE BACU008282/1-981 TQAFEYLSKL RELWLRNNPI ESIPSYAFNR VPSLRRLDLG ELKRLEYISE bmy_14013T0/1-481 TQAFEYLSKL RELWLRNNPI ESIPSYAFNR VPSLRRLDLG ELKRLEYISE ENSP00000471502/1-713 TQAFEYLSKL RELWLRNNPI ESIPSYAFNR VPSLRRLDLG ELKRLEYISE ENSBTAP00000040907/1-711 TQAFEYLSKL RELWLRNNPI ESIPSYAFNR VPSLRRLDLG ELKRLEYISE 201 250 ENSTTRP00000002078/1-710 AAFEGLVNLR YLNLGMCNLK DIPNLTALVR LEELELSGNR LDLIRPGSFQ BACU008282/1-981 AAFEGLVNLR YLNLGMCNLK DIPNLTALVR LEELELSGNR LDLIRPGSFQ bmy_14013T0/1-481 AAFEGLVNLR YLNLGMCNLK DIPNLTALVR LEELELSGNR LDLIRPGSFQ ENSP00000471502/1-713 AAFEGLVNLR YLNLGMCNLK DIPNLTALVR LEELELSGNR LDLIRPGSFQ ENSBTAP00000040907/1-711 AAFEGLVNLR YLNLGMCNLK DIPNLTALVR LEELELSGNR LDLIRPGSFQ 251 300 ENSTTRP00000002078/1-710 GLTSLRKLWL MHAQVATIER NAFDDLKSLE ELNLSHNNLM SLPHDLFTPL BACU008282/1-981 GLTSLRKLWL MHAQVATIER NAFDDLKSLE ELNLSHNNLM SLPHDLFTPL bmy_14013T0/1-481 GLTSLRKLWL MHAQVATIER NAFDDLKSLE ELNLSHNNLM SLPHDLFTPL ENSP00000471502/1-713 GLTSLRKLWL MHAQVATIER NAFDDLKSLE ELNLSHNNLM SLPHDLFTPL ENSBTAP00000040907/1-711 GLTSLRKLWL MHAQVATIER NAFDDLKSLE ELNLSHNNLM SLPHDLFTPL 301 350 ENSTTRP00000002078/1-710 HRLERVHLNH NPWHCNCDVL WLSWWLKETV PSNTTCCARC HAPAGLKGRY BACU008282/1-981 HRLERVHLNH NPWHCNCDVL WLSWWLKETV PSNTTCCARC HAPAGLKGRY bmy_14013T0/1-481 HRLERVHLNH NPWHCNCDVL WLSWWLKETV PSNTTCCARC HAPAGLKGRY ENSP00000471502/1-713 HRLERVHLNH NPWHCNCDVL WLSWWLKETV PSNTTCCARC HAPAGLKGRY ENSBTAP00000040907/1-711 HRLERVHLNH NPWHCNCDVL WLSWWLKETV PSNTTCCARC HAPAGLKGRY 351 400 ENSTTRP00000002078/1-710 IGELDQSHFT CYAPVIVEPP TDLNVTEGMA AELKCRTGTS MTSVNWLTPN BACU008282/1-981 IGELDQSHFT CYAPVIVEPP TDLNVTEGMA AELKCRTGTS MTSVNWLTPN bmy_14013T0/1-481 IGELDQSHFT CYAPVIVEPP TDLNVTEGMA AELKCRTGTS MTSVNWLTPN ENSP00000471502/1-713 IGELDQSHFT CYAPVIVEPP TDLNVTEGMA AELKCRTGTS MTSVNWLTPN ENSBTAP00000040907/1-711 IGELDQSHFT CYAPVIVEPP TDLNVTEGMA AELKCRTGTS MTSVNWLTPN 401 450 ENSTTRP00000002078/1-710 GTLMTHGSYR VRISVLHDGT LNFTNVTVQD TGQYTCM--- --VTNSAGNT BACU008282/1-981 GTLMTHGSYR VRISVLHDGT LNFTNVTVQD TGQYTCMGPQ ILVAMVALQQ bmy_14013T0/1-481 GTLMTHGSYR VRISVLHDGT LNFTNVTVQD TGQYTCM--- --VTNSAGNT ENSP00000471502/1-713 GTLMTHGSYR VRISVLHDGT LNFTNVTVQD TGQYTCM--- --VTNSAGNT ENSBTAP00000040907/1-711 GTLMTHGSYR VRISVLHDGT LNFTNVTVQD TGQYTCM--- --VTNSAGNT 451 500 ENSTTRP00000002078/1-710 TASATLNVSA VDPVAAGGAG GGGGGPGVG- ---------- ---GG-GGGS BACU008282/1-981 DSHPAPRWRP PTPPPLGHSG GGGRFQRGSR VKCPKLSRCP NLVCGVRWGD bmy_14013T0/1-481 TASATLNVSA VDP------- ---------- ---------- ---GG----- ENSP00000471502/1-713 TASATLNVSA VDPVAAGGTG SGGGGPGGS- ---------- ---GGVGGGS ENSBTAP00000040907/1-711 TASATLNVSA VDPVAAGSAG SAGG--GGG- ---------- ---GGPGGGG 501 550 ENSTTRP00000002078/1-710 G--------- ---------- ---------- -GYTYFTTVT VETLETQPGE BACU008282/1-981 GRQQAAAELR PQATKSKGMA LTTVPRKVGI LGYGRVGQSL VSHLLTQGPE bmy_14013T0/1-481 ---------- ---------- ---------- ---------- ---------- ENSP00000471502/1-713 G--------- ---------- ---------- -GYTYFTTVT VETLETQPGE ENSBTAP00000040907/1-711 G--------- ---------- ---------- -GYTYFTTVT VETLETQPGE 551 600 ENSTTRP00000002078/1-710 EALQPRGTEK EPPGPTTDGV ---------- ---------- ---------- BACU008282/1-981 LGLELVFVWN RDPGRMAGSV PPTLQLQNLA ALGERHPDLV VEVAHPKIIH bmy_14013T0/1-481 ---------- ---------- ---------- ---------- ---------- ENSP00000471502/1-713 EALQPRGTEK EPPGPTTDGV ---------- ---------- ---------- ENSBTAP00000040907/1-711 EALQPRGTEK EPPGPTTDGV ---------- ---------- ---------- 601 650 ENSTTRP00000002078/1-710 ---------- ---------- ---------- ---------- -------WGG BACU008282/1-981 ESGAEILRYA NLLVGSPSAL ADQATERQLL EASHRWGHAV FVARGALWGT bmy_14013T0/1-481 ---------- ---------- ---------- ---------- ---------- ENSP00000471502/1-713 ---------- ---------- ---------- ---------- -------WGG ENSBTAP00000040907/1-711 ---------- ---------- ---------- ---------- -------WGG 651 700 ENSTTRP00000002078/1-710 ---GRPGEAA GPASSSTTA- ---------- --PAPRSSRP TEKAFTVPIT BACU008282/1-981 EDIARLDEAG GLQSLRVTMA THPDGFRLEG PLATAHSPGP RTVLYEGPVR bmy_14013T0/1-481 ---------- ---------- ---------- ---------- ---------- ENSP00000471502/1-713 ---GRPGDAA GPASSSTTA- ---------- --PAPRSSRP TEKAFTVPIT ENSBTAP00000040907/1-711 ---GRPGEGA GQASSSTTA- ---------- --PAPRSSRP TEKAFTVPIT 701 750 ENSTTRP00000002078/1-710 DVTENALKDL DDVMKTTKII IGCFVAITFM AAV-MLVAFY KLRKQH---- BACU008282/1-981 GLCPLAPRNS NTMAAAALAA PG----LGFD RVIGVLVADF SLKDMHVVDV bmy_14013T0/1-481 ---------- ---------- ---------- ---------- -LRQR----- ENSP00000471502/1-713 DVTENALKDL DDVMKTTKII IGCFVAITFM AAV-MLVAFY KLRKQH---- ENSBTAP00000040907/1-711 DVTENALKDL DDVMKTTKII IGCFVAITFM AAV-MLVAFY KLRRQH---- 751 800 ENSTTRP00000002078/1-710 QLHKHHGPTR TVEIINVEDE LPAASAVSVA AAA------- --AVAGGGGV BACU008282/1-981 ELSGPPGPTG RSFAVHTHRE NPTEPGAVTG SATITTFWRS LLGAEDGMSQ bmy_14013T0/1-481 ---------- ---------- ---------- ---------- ---------- ENSP00000471502/1-713 QLHKHHGPTR TVEIINVEDE LPAASAVSVA AAA------- --AVASGGGV ENSBTAP00000040907/1-711 QLHKHHGPTR TVEIINVEDE LPAASAVSVA AAA------- --AVAGGGGV 801 850 ENSTTRP00000002078/1-710 GGDSHLALPA LERDHINHHH YVAAAF---- -KAHYSSNPS GGSCGGKGPP BACU008282/1-981 APGAQPSPPS VYHERQRLEL CAVHALNNVL QQQLFSQEAA DEICKRLAPD bmy_14013T0/1-481 -------LPA LIEEREKK-- ---------- ---------- -GNMGGQ--- ENSP00000471502/1-713 GGDSHLALPA LERDHLNHHH YVAAAF---- -KAHYSSNPS GGGCGGKGPP ENSBTAP00000040907/1-711 GGDSHLALPA LERDHLNHHH YVAAAF---- -KAHYSSNPS GGGCGGKGPP 851 900 ENSTTRP00000002078/1-710 GLNSIHEPLL FKSGSKENVQ ETQI------ ---------- ---------- BACU008282/1-981 SRLNPHRSLL GTGNYDVNVI MAALQGQGLA AVWWDRRRPL SQLVLPRVLG bmy_14013T0/1-481 ---------- ---------- ---------- ---------- ---------- ENSP00000471502/1-713 GLNSIHEPLL FKSGSKENVQ ETQI------ ---------- ---------- ENSBTAP00000040907/1-711 GLNSIHEPLL FKSGSKENVQ ETQI------ ---------- ---------- 901 950 ENSTTRP00000002078/1-710 ---------- ---------- ---------- ---------- ---------- BACU008282/1-981 LILNLPSPVS LGLLSLPLRR RHWVALRQVD GIYYNLDSKL RAPEVLGNED bmy_14013T0/1-481 ---------- ---------- ---------- ---------- ---------- ENSP00000471502/1-713 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040907/1-711 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000002078/1-710 ---------- ---------- ---------- ----- BACU008282/1-981 GVRAFLAAAL AQGLCEVLLV VTKEVEEKGS WLRAD bmy_14013T0/1-481 ---------- ---------- ---------- ----- ENSP00000471502/1-713 ---------- ---------- ---------- ----- ENSBTAP00000040907/1-711 ---------- ---------- ---------- -----