KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:12 2014 Check: 00 .. Name: ENSP00000362734/1-1285 Len: 1289 Check: 6825 Weight: 1.00 Name: ENSBTAP00000040914/1-1281 Len: 1289 Check: 9064 Weight: 1.00 Name: ENSTTRP00000010970/1-1254 Len: 1289 Check: 3722 Weight: 1.00 Name: bmy_12925T0/1-1228 Len: 1289 Check: 3234 Weight: 1.00 Name: BACU016306/1-1071 Len: 1289 Check: 3852 Weight: 1.00 // 1 50 ENSP00000362734/1-1285 MALARPGTPD PQALAS---V LLLLLWAPAL SLLA-GTVPS EPPSACASDP ENSBTAP00000040914/1-1281 MALAWPGTRD PRPSAHLLLL LLLLHRAPVL ALPA-GTVPS ETPGACASDP ENSTTRP00000010970/1-1254 ---------- PRLP------ ---------- -----RTAPS DPPGACASDP bmy_12925T0/1-1228 -------MEA PLKPFP---- ---VLGADAC SLLGPGTAPS DPPGACASDP BACU016306/1-1071 MAQARPGTRD PRPPAPLLLL LLLLLGGSAL ALPS-GTAPS DPLGACASDP 51 100 ENSP00000362734/1-1285 CAPGTECQAT ESGGYTCGPM EPRGCATQPC HHGALCVPQG PDPTGFRCYC ENSBTAP00000040914/1-1281 CAPGTKCQAT ENAGYSCVPL EPRGCASQPC HHGALCVPQG PGPDDFRCYC ENSTTRP00000010970/1-1254 CAPGTECQAT ENGGYTCGPL EPRGCASRPC HHGALCVPQA PDPSGFRCYC bmy_12925T0/1-1228 CAPGTECQAT ENGGYTCGPL EPRGCASQPC HHGALCVPQG PDPSGFRCYC BACU016306/1-1071 CAPGTECQAT ENGGYTCGPL EPRGCASQPC HHGALCVPQG PDPSGFRCYC 101 150 ENSP00000362734/1-1285 VPGFQGPRCE LDIDECASRP CHHGATCRNL ADRYECHCPL GYAGVTCEME ENSBTAP00000040914/1-1281 VPGFQGPHCE LDIDECASRP CHHGATCRNL ADRYECHCPL GYEGVTCETE ENSTTRP00000010970/1-1254 VPGFQGPRCE LDIDECASRP CHHGATCHNL ADRYECHCPL GYAGVTCEAE bmy_12925T0/1-1228 VPGFQGPRCE LDIDECASRP CHHGATCHNL ADRYECHCPL GYAGVTCEAE BACU016306/1-1071 VPGFQGPRCE LDIDECASRP CHHGATCHNL ADRYECHCPL GYAGVTCEAE 151 200 ENSP00000362734/1-1285 VDECASAPCL HGGSCLDGVG SFRCVCAPGY GGTRCQLDLD ECQSQPCAHG ENSBTAP00000040914/1-1281 VDECASAPCL HGGSCLDGVG SYRCVCAPGY GGASCQLDLD ECQSQPCAHG ENSTTRP00000010970/1-1254 VDECASGPCL HGGSCLDGLG SYRCVCAPGF GGASCQLDLD ECQSQPCVHG bmy_12925T0/1-1228 VDECASAPCL HGGSCLDGLG SYRCVCAPGF GGASCQLDLD ECQSQPCVHG BACU016306/1-1071 VDECASAPCL HGGSCLDGLG SYRCVCAPGF GGASCQLDLD ECQSQPCVHG 201 250 ENSP00000362734/1-1285 GTCHDLVNGF RCDCAGTGYE GTHCEREVLE CASAPCEHNA SCLEGLGSFR ENSBTAP00000040914/1-1281 GVCRDLVNGF RCDCADTGYE GERCELEVLE CASAPCANNA SCLEGLGSFR ENSTTRP00000010970/1-1254 GVCHDLVNGF RCDCADTGYE GARCEQEVLE CASAPCANNA SCLEGLGSFR bmy_12925T0/1-1228 GVCHDLVNGF RCDCADTGYE GARCEQEVLE CASAPCAHNA SCLEGLGSFR BACU016306/1-1071 GVCHDLVNGF RCDCADTGYE GARCEQEVLE CASAPCAHNA SCLEGLGNFR 251 300 ENSP00000362734/1-1285 CLCWPGYSGE LCEVDEDECA SSPCQHGGRC LQRSDPALYG GVQAAFPGAF ENSBTAP00000040914/1-1281 CLCWPGYSGE RCEVDEDECA VGPCQHGGQC LQRSDPTLYG GIQATFPDDF ENSTTRP00000010970/1-1254 CLCWPGYSGE RCEVDEDECA VGPCQHGGQC LQRSDPTLYG GIQAAFPGAF bmy_12925T0/1-1228 CLCWPGYSGE RCEVDEDECA VGPCQHGGQC LQRSDPTLYG GIQAAFPGAF BACU016306/1-1071 CLCWPGYSGE RCEVDEDECA VGPCQHGGQC LQRSDPSLYG GIQAAFPGAF 301 350 ENSP00000362734/1-1285 SFRHAAGFLC HCPPGFEGAD CGVEVDECAS RPCLNGGHCQ DLPNGFQCHC ENSBTAP00000040914/1-1281 SFRQAAGFVC RCPPGFEGDD CGEDVDECAS RPCLSGGLCQ DLPNGFHCHC ENSTTRP00000010970/1-1254 SFRHAAGFLC RCPLGFEGDD CSVDVDECAS RPCLSGGLCQ DLPNGFQCHC bmy_12925T0/1-1228 SFRHAAGFLC RCPPGFE--- ---------- ---------- ---------- BACU016306/1-1071 SFRHAAGFLC RCPPGFEGDD CGVDVDECAS RPCLSGGLCQ DLPNGFQCHC 351 400 ENSP00000362734/1-1285 PDGYAGPTCE EDVDECLSDP CLHGGTCSDT VAGYICRCPE TWGGRDCSVQ ENSBTAP00000040914/1-1281 PDGYTGPTCQ EDMDECLSEP CLHGGTCEDT VAGYICGCPE AWGGLDCSVP ENSTTRP00000010970/1-1254 SDGYTGLACQ EDVDECLSEP CLHGGTCEDT VAGYICWCPE AWGGRDCSVQ bmy_12925T0/1-1228 -----GLTCQ EDVDECLSEP CLHGGTCEDT VAGYICWCPE AWGGRDCSVQ BACU016306/1-1071 SDGYTGLTCQ EDVDECLSEP CLHGGTCEDT VAGYICWCPE AWGGRDCSVQ 401 450 ENSP00000362734/1-1285 LTGCQGHTCP LAATCIPIFE SGVHSYVCHC PPGTHGPFCG QNTTFSVMAG ENSBTAP00000040914/1-1281 LTGCQGHTCP PTATCVPTFE SGVHSYTCRC PPGTHGPFCG QNTTFSMVAG ENSTTRP00000010970/1-1254 LAGCQGHTCP LAATCIPTFQ SGVHSYACRC PPGTHGPFCG QNTTFSVVAG bmy_12925T0/1-1228 LTGCQGHTCP LAATCIPTFQ SGVHSYACRC PPGTHGPFCG QNTTFSVVAG BACU016306/1-1071 LTGCQGHTCP LAATCIPTFQ SGVHSYACRC PPGTHGPFCG QNTTFSVVAG 451 500 ENSP00000362734/1-1285 SPIQASVPAG GPLGLALRFR TTLPAGTLAT RNDTKESLEL ALVAATLQAT ENSBTAP00000040914/1-1281 NPLRASVPAG SSLGLALRFR TTIRVGALAT CSDTQGSVEL ALVEARLQAT ENSTTRP00000010970/1-1254 NPVRASVPAG GSLSLALRFR TTIPAGALAA RSDTQGSLEL ALVETTLQAT bmy_12925T0/1-1228 NPVRASVPAG GSLSLALRFR TTIPAGALAT RSDTQGSLEL ALVEATLQAT BACU016306/1-1071 NPVQASVPAG GSLSLALRFR TTIPAGALAT LSDTQGSLEL ALVEATLQAT 501 550 ENSP00000362734/1-1285 LWSYSTTVLV LRLPDLALND GHWHQVEVVL HLATLELRLW HEGCPARLCV ENSBTAP00000040914/1-1281 LWSHGKNVLV LRLLEPPLND GHWHRVEVTL RLGVLELRLW HEDCPAHLCV ENSTTRP00000010970/1-1254 LWSHGNNGCI LRLLDLPLND GHWHRVEVTL RFGVLEMRLW HEGCPAHLCV bmy_12925T0/1-1228 LWSHSNNVCI LRLLDLPLND GHWHRVEVML RLGVLEMRLW HEGCPAHLCV BACU016306/1-1071 LWSHGNNVCI LRLLDLPLND GHWHQVEVML RLGVLEMRLW HEGCPAHLCV 551 600 ENSP00000362734/1-1285 ASGPVALAST ASATPLPAGI SSAQLGDATF AGCLQDVRVD GHLLLPEDLG ENSBTAP00000040914/1-1281 ASSPMA---T AAPAPTPAGS RFTQLGGVAF AGCLQDVQVD GHLLLPEDLG ENSTTRP00000010970/1-1254 ASSPVALPPT ASPAPTPAGF CSTQLGGVAF TGCLQDVHVD GHLLLPEDLG bmy_12925T0/1-1228 ASSPVAPLPT ASPAPKPAGF CSTQLGGVAF TGCLQDVHVD GHLLLPEDLG BACU016306/1-1071 ASSPVALPPT ASPAPKPAGF CSMQLGGVAF TGCLQDVHVD GHLLLPEDLG 601 650 ENSP00000362734/1-1285 ENVLLGCERR EQCRPLPCVH GGSCVDLWTH FRCDCARPHR GPTCADEIPA ENSBTAP00000040914/1-1281 ENVLLGCWHQ EHCQPPPCAH GGVCVDLWTH FHCDCPRPYR GPTCADEVPA ENSTTRP00000010970/1-1254 ENVLLGCGRQ EQCQPPPCAH AGVCVDLWTH FRCDCPRPYS GPTCADEVPA bmy_12925T0/1-1228 ENVLLGCGRQ EQCQPPPCAH AGVCVDLWTH FRCDCPRPYS GPTCADEAPA BACU016306/1-1071 ENVLLGCGRQ EQCQPPPCAH AGVCVDLWTH FRCDCPRPYS GPTCADEAPA 651 700 ENSP00000362734/1-1285 ATFGLGGAPS SASFLLQELP GPNLTVSFLL RTRESAGLLL QFANDSAAGL ENSBTAP00000040914/1-1281 ATFGLGGTLS SASFLLDQPP GPNLTVSFLL RTREPAGLLL QLTNGSAAGL ENSTTRP00000010970/1-1254 ATFGLGGTLS SASFLLDQLP GPNLTMSFLL RTRERAGLLL QLANDSVAGL bmy_12925T0/1-1228 ATFGLGGTLS SASFLLDQLP GPNLTMSFLL RTRERAGLLL QLANDSVAGL BACU016306/1-1071 ATFGLGGTLS SASFLLDQLP GPNLTMSFLL RTRERAGLLL QLANDSVAGL 701 750 ENSP00000362734/1-1285 TVFLSEGRIR AEVPGSPAVV LPGRWDDGLR HLVMLSFGPD QLQDLGQHVH ENSBTAP00000040914/1-1281 TVFLSEGQIW AEALGSPALV LPGRWDDGLR HLVTLSFGPD QLWGVGQQVH ENSTTRP00000010970/1-1254 TVFLREGQIR AEVLGSPALV LPGRWDDGLR HLVTLSFGPD QLQGLGQQVH bmy_12925T0/1-1228 TVFLREGQIR AEVLGSPALV LPGRWDDGLR HLVTLRFGPD QLQGLGQQVH BACU016306/1-1071 TVFLREGQIR AEVLGSPALV LPGRWDDGLR HLVTLSFGPD QLQGLGQQVH 751 800 ENSP00000362734/1-1285 VGGRLLAADS QPWGGPFRGC LQDLRLDGCH LPFFPLPLDN SSQPSELGGR ENSBTAP00000040914/1-1281 VGGRLLPGDA EPWGGPFRGC MQDVRLNDLH LPFFPPLLGN SSLPSVPGRG ENSTTRP00000010970/1-1254 VGGRLLPADA QPWGGPFRGC IQDLRLNSLH LPFFPPLLEN SSLPSVPGSR bmy_12925T0/1-1228 VGGRLLPADA QPWGGPFRGC IQDLRLNSLH LPFFPPLLEN SSLPSMPGSR BACU016306/1-1071 VGGRLLPADA QPWGGPFRGC IQDLRLNSLH LPFFPPLLEN SSLPSMPGSR 801 850 ENSP00000362734/1-1285 QSWNLTAGCV SEDMCSPDPC FNGGTCLVTW NDFHCTCPAN FTGPTCAQQL ENSBTAP00000040914/1-1281 QSWNLTMGCI SEDTCNPEPC LNGGTCLVTW NDFHCTCPAN FTGPTCAQQL ENSTTRP00000010970/1-1254 RSWNLTMGCV SEDTCSPQPC LNGGTCLVSW NDFHCTCPVN FTGPTCAQQL bmy_12925T0/1-1228 QSWNLTMGCV SEDTCSPQPC LNGGTCLVSW NDFHCACPAN FTGPTCAQQL BACU016306/1-1071 QSWNLTMGCV SEDTCSPQPC LNGGTCLVSW NDFHCACPAN FTGPTCAQQL 851 900 ENSP00000362734/1-1285 WCPGQPCLPP ATCEEVPDGF VCVAEATFRE GPPAAFSGHN ASSGRLLGGL ENSBTAP00000040914/1-1281 WCPGQPCLPP ATCEEVPDGF VCVAEATFRE GPPAEFSGHN ASSGSALSGL ENSTTRP00000010970/1-1254 WCPGQPCLPP ATCEEVPDGF VCVAEATFRE GPPAEFSGHN ASSGRALSGL bmy_12925T0/1-1228 WCPGQPCLPP ATCEEVPDGF -----ATFRE GPPAEFSGHN ASSGRALSGL BACU016306/1-1071 WCPGQPCLPP ATCEEVPDGF VCVAEATFRE GPPAEFSGHN ASSERALSGL 901 950 ENSP00000362734/1-1285 SLAFRTRDSE AWLLRAAAGA LEGVWLAVRN GSLAGGVRGG HGLPGAVLPI ENSBTAP00000040914/1-1281 SLVFRTRDPE AGLLRAEDGP -AAVWLAVRN GSLAAGVRSG AGLPRAVLPA ENSTTRP00000010970/1-1254 SLAFRTRDPE AGLMRAAGAP -DTVWLAVCX XXXXXXXXXX XXXXXXXXXX bmy_12925T0/1-1228 SLAFRTRDPE AGLLRAADTP -DTVWLAVRN GSLAAGVRSG PGLPGAVLPA BACU016306/1-1071 SLAFRTRDPE AGLLRAADTP -DTVWLA--- ---------- ---------- 951 1000 ENSP00000362734/1-1285 PGPRVADGAW HRVRLAMERP AATTSRWLLW LDGAATPVAL RGLASDLGFL ENSBTAP00000040914/1-1281 PGPRVADGAW HRVRLAMEQP AAVASRWLLW LDGAATPVSL RGLAGDLDFL ENSTTRP00000010970/1-1254 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12925T0/1-1228 PGPRVADGAW HRVRLTMERP AASASRWLLW LDGAATPVAL RGLAGDLDFL BACU016306/1-1071 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000362734/1-1285 QGPGAVRILL AENFTGCLGR VALGGLPLPL ARPRPGAAPG AREHFASWPG ENSBTAP00000040914/1-1281 RGPGAARVLL AENFTGCLGR VALGGHPLPL ARPRPGAAPG SREPFSARPG ENSTTRP00000010970/1-1254 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12925T0/1-1228 RGPGGARVLL AENFTGCLGR VALGGLPLPL AGPRPDAAPG SREPFSAWPG BACU016306/1-1071 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000362734/1-1285 TPAPILGCRG APVCAPSPCL HDGACRDLFD AFACACGPGW EGPRCEAHVD ENSBTAP00000040914/1-1281 APAPHLGCSG APVCVPSPCL HGGACRDLFD AFACACGPGW EGPRCEDRAD ENSTTRP00000010970/1-1254 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12925T0/1-1228 APLPRLGCRG APVCVPSPCL HGGVCRDLFD AFACACGLGW EGPRCEARAD BACU016306/1-1071 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000362734/1-1285 PCHSAPCARG RCHTHPDGRF ECRCPPGFGG PRCRLPVPSK ECSLNVTCLD ENSBTAP00000040914/1-1281 PCRSAPCARG RCHAHPDGHF ECRCPPGFAG PRCRLPVPPE GCSLNITCLN ENSTTRP00000010970/1-1254 XXXXXXXXXX XXXXXXXXRF ECRCPPGFAG PRCRLPVLPE ECSLNVTCLD bmy_12925T0/1-1228 PCRSAPCARG RCHARPDGRF ECRCPPGFAG PRCRLPVLPE ECSLNVTCLS BACU016306/1-1071 ---------- ---------- ---------- ---------- ECSLNVTCLS 1151 1200 ENSP00000362734/1-1285 GSPCEGGSPA ANCSCLEGLA GQRCQVPTLP CEANPCLNGG TCRAAGGVSE ENSBTAP00000040914/1-1281 GGQCEEGPQG ANCSCQESFA GQRCQI---P CEANPCLNGG TCRAADGVYE ENSTTRP00000010970/1-1254 GGPCEGGPQG ANCSCQESFA GQRCHI---P CEANPCLNGG TCRAAGGVYE bmy_12925T0/1-1228 GGPCEGGPQG ANCSCQENFA GQRCQI---P CEANPCLNGG TCRTAGGVYE BACU016306/1-1071 GGPCERGPQG ANCSCQESFA GQRCQI---P CEANPCLNGG TCRTAGGVYE 1201 1250 ENSP00000362734/1-1285 CICNARFSGQ FCEVAKGLPL PLPFPLLEVA VPAACACLLL LLLGLLSGIL ENSBTAP00000040914/1-1281 CVCNARFSGQ FCEVVKGLPL PLPFPLLEVA VPAACACLLL LLLGLLSGIL ENSTTRP00000010970/1-1254 CICSSSFSGQ FCEVVKGLSL PLPFPLLEVA VPAACACLLL LLLGLLSGIL bmy_12925T0/1-1228 CICSASFSGQ FCEVVKGLSL PLPFPLLEVA VPAACACLLL LLLGLLSGIL BACU016306/1-1071 CICSASFSGQ FCEVVKGLSL PLPFPLLEVA VPAACACLLL LLLGLLSGIL 1251 1300 ENSP00000362734/1-1285 AARKRRQSEG TYSPSQQEVA GARLEMDSVL KVPPEERLI ENSBTAP00000040914/1-1281 AARKRRQSEG TYSPSQQEVA GARLEMDSVL KVPPEERLI ENSTTRP00000010970/1-1254 AARKRRQSEG TYSPSQQEVA GARLEMDSVL KVPPEERLI bmy_12925T0/1-1228 AARKRRQSEG TYSPSQQEVA GARLEMDSVL KVPPEERLI BACU016306/1-1071 AARKRRQSEG TYSPSQQEVA GARLEMDSVL KVPPEERLI