KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:13 2014 Check: 00 .. Name: ENSP00000318429/1-670 Len: 817 Check: 5955 Weight: 1.00 Name: ENSBTAP00000040922/1-693 Len: 817 Check: 4170 Weight: 1.00 Name: ENSTTRP00000007377/1-375 Len: 817 Check: 7822 Weight: 1.00 Name: bmy_06438T0/1-678 Len: 817 Check: 3219 Weight: 1.00 Name: BACU002168/1-660 Len: 817 Check: 2153 Weight: 1.00 // 1 50 ENSP00000318429/1-670 ---------- ---------- ---------- -------MEG ERRAYSKEVH ENSBTAP00000040922/1-693 MPFGLSAGST RSEDGSEAFL EGMVDWELSR LQRQCKVMED ERRAYSKEVH ENSTTRP00000007377/1-375 ---------- ---------- ---------- ---------- ---------- bmy_06438T0/1-678 ---------- --MVGSQIHM EG---W---- ---------- ---------- BACU002168/1-660 MPLGLSAGSS RSEDGSEAFL EGMVDWELSR LQRQCKVMEG ERRAYSKEVH 51 100 ENSP00000318429/1-670 QRINKQLEEI RRLEEVRGDL QVQISAAQNQ VKRLRDSQRL ENMDRLLKGR ENSBTAP00000040922/1-693 QRINKQLEEI QRLEGVRHKL RVQISIAQSQ VRRLRDSERL ESMGHLLKCQ ENSTTRP00000007377/1-375 ---------- ---------- ---------- ---------- ---------- bmy_06438T0/1-678 ---------- ---------- ---------- ---------- ---------- BACU002168/1-660 QRIKKQLEEI QRLEGVRDKL QVQISIAQSQ VKRLRDSKRL ENMGHLLKCQ 101 150 ENSP00000318429/1-670 AQVQAEIEEL QEQTRALDKQ IQEWETRIFT HSKNVRSPGF ILDQKVKIRR ENSBTAP00000040922/1-693 VRVQAEVKEL QAQNQALDRE IQEWESRNSA HSKNARSPGC VQHDKVKSQR ENSTTRP00000007377/1-375 ---------- ---------- ---------- ---------- ---------- bmy_06438T0/1-678 ---------- ---------- IQEWESRIFA HGKDVKAPGC ILDQKVKSQR BACU002168/1-660 VQAQAEVTEL QEQTRALDRQ IQEWESRIFA HGKDVKAPGC ILDQKVTSQR 151 200 ENSP00000318429/1-670 RIRILENQLD R--------- ---------- ------VTCH FDNQLVRNAA ENSBTAP00000040922/1-693 RIKSLENQLD K--------- ---------- ------VICR FDIQLAQNAT ENSTTRP00000007377/1-375 ---------- ---------- ---------- ---------- ---------- bmy_06438T0/1-678 RIKILEDQLD RSGRGRQARP QTDSWYPLPP PRPPSQVTRR FDIQLVRNAT BACU002168/1-660 RIKILEDQLD R--------- ---------- ------VTCR FDIQLVRNAT 201 250 ENSP00000318429/1-670 LREELDLLRI DRNRYLNVDR KLKKEIHHLH HLVSTLILSS TSAYAV---- ENSBTAP00000040922/1-693 LREELDLLRI ERNRYLNVDR KLQKEIQLLK DSVRNLMVSS TSAYTV---- ENSTTRP00000007377/1-375 ---------- ---------- ---------- ---------- ---------- bmy_06438T0/1-678 LREELDLLQI ERNRYLNVDR KLQKEIQLLR DMVRTLMVSS TSAYTIRMNP BACU002168/1-660 LREELDLLQI ERNRYLNVDR KLQKEIQLLR DTVRTLMVSS TSAYTI---- 251 300 ENSP00000318429/1-670 ---------- ------REEA KAKMGLLRER AEKEEAQSEM EAQVLQRQIL ENSBTAP00000040922/1-693 ---------- ------REEA KAKLGMLRER AEKEVAQNET EVQILQRQIA ENSTTRP00000007377/1-375 ---------- ---------- ---------- ---------- ---------- bmy_06438T0/1-678 NPTSNLPDPG LTPTPPREEA KTKLGMLRER AEKEVAQNDT EVQVLQRQIA BACU002168/1-660 ---------- ------REEV KTKLGMLRER AENEVAQNDT EVQILQRQIA 301 350 ENSP00000318429/1-670 HLEQLHHFLK LKNNDRQPDP DVLEKREKQA GE-------- ---------- ENSBTAP00000040922/1-693 HLEQLHHFLK LKNGDRQPDS AIVEKREQRA RE-------- ---------- ENSTTRP00000007377/1-375 ---------- ---------- ---------- EE-------- ---------- bmy_06438T0/1-678 RLEQLHRFLK LKNGDRQPDP AVVEKREQRG EAGAATSASS RPGPGRGGAA BACU002168/1-660 HLEQLHRFLK LKNGDRQPDP AVVEKRQQRV EE-------- ---------- 351 400 ENSP00000318429/1-670 ---------- ---------- ---------V AEGVWKTSQE RLVLCYEDAL ENSBTAP00000040922/1-693 ---------- ---------- ---------V AEGLRKTSQE KLVLRYEDAL ENSTTRP00000007377/1-375 ---------- ---------- ---------- ---------- ---------- bmy_06438T0/1-678 RSSVPSQAPP PWWPPRTPTS LPPHPPAREV AEGLRKTSQE KLVLRYEDAL BACU002168/1-660 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000318429/1-670 NKLSQLMGES DPDLLVQKYL EIEERNFAEF NFINEQNLEL EHVQEEIKEM ENSBTAP00000040922/1-693 NNCPR-DGES DPDLLVEKYL ECEYLG---- --VERGRLAA PGPQNPVQTM ENSTTRP00000007377/1-375 RNFAEFNFIN EQNSELER-L QEEIKE---- ---------- ---------M bmy_06438T0/1-678 KKLSQLTGES DPDSLVEKYL ECESLG---- ---------- ---------M BACU002168/1-660 RNFAEFNFIN EQNSELEH-L QEEIKE---- ---------- ---------M 451 500 ENSP00000318429/1-670 QEALVSARAS KDDQHLLQEQ QQKVLQQRMD KVHSEAERLE ARFQDVRGQL ENSBTAP00000040922/1-693 QEALVSGRRS EEDRRAQQEQ QRAELQQRVD DVHSEADDLE ARYHNFREQL ENSTTRP00000007377/1-375 QEALESGRRS EEDRRSRQEQ QLAELQQRVD EVHTEAENLE ARFQNFRGQL bmy_06438T0/1-678 QEALVSGRRS EEDRRSRQEQ QRAELQQRVD EVHTEAENLE ARFQNFRGQL BACU002168/1-660 QEALVSGRRS EEDRRSRQEQ QRAELQQRVD EVHTEAENLE ARFQNFRGQL 501 550 ENSP00000318429/1-670 EKLKADIQLL FTKAHCDSSM IDDLLGVKTS MGDRDMGLFL SLIEKRLVEL ENSBTAP00000040922/1-693 EKLKTNIQHL FTRAQCDSTL INDLLGIKTH MRDRDISLFL SLIEKRLVQL ENSTTRP00000007377/1-375 EKLKTDIQHL FTRAQCDSTV IDDLLGVKTH MRDRDIGLFL GLIEKRLVEL bmy_06438T0/1-678 EKLKTDIQRL FTRAQCDSTV INDLLGVKVH MRDRDIGLFL GLIEKRLVEL BACU002168/1-660 EKLKTDIQRL FTRAQCDSTV INDLLGVKSH MRDRDIGLFL GLIEKRLVEL 551 600 ENSP00000318429/1-670 LTVQAFLHAQ -------SFT SLADAALLVL GQSLEDLPKK MAPLQPPDTL ENSBTAP00000040922/1-693 LTVQAFLETQ V---VNYTST SMFNAALMVL GQSSEDFPKK VAPPQPPDNL ENSTTRP00000007377/1-375 LTVQAFLETQ -----NNLSA SLPDAALLVL GQSPEDLPKK VAPPQPPDHL bmy_06438T0/1-678 LTVQAFLETQ VGVQTNNLPA SSPNAALLVL GQSPEDLPKK VAPPQPPDNL BACU002168/1-660 LTVQAFLETQ -----NSLSA SSPNAALLVL GQSPEGLPKK VAPPQPPDNL 601 650 ENSP00000318429/1-670 EDPPGFEASD DYPMSREELL SQVEKLVELQ EQAEAQRQKD LAAAAAKLDG ENSBTAP00000040922/1-693 EDPPGFEAKD DYPLSKEELL SSVMKALEAR EQPKEQHLKE LVESI-KVES ENSTTRP00000007377/1-375 EDPPGFEAND DYPLSEGELL SYVVKSLEAR EQAKGQYLKQ QAEAVTKVDS bmy_06438T0/1-678 EDPPGFEAND DCPLSKEELL SRVVKSLEAR EQAGERRLEE MAEAVSKVDS BACU002168/1-660 EDPPGFEAND DYPLSKEELL SRVVKSLEAR EQAGERRLEE MAEAVRKVDS 651 700 ENSP00000318429/1-670 TLSVDLASTQ RAGSSTVLVP TRHPHAIPGS ILSHKTS--- -----RDRGS ENSBTAP00000040922/1-693 TPSMTSSTQK -VSSSSRLVT -QRPSQVPGS IMSHRTSGIL VSSGGRATSS ENSTTRP00000007377/1-375 TPSVTLSSTQ -ASSSLPLLP -KSPSAVPGS LTSHRAS--- ---RGRATSS bmy_06438T0/1-678 TPSVALASTP -ASPGLPLLP -KSPRAVPGS LASHRTSGIL ASSGGRATGS BACU002168/1-660 TP-------- -ASPGLPLLP -KSPRAVPGS LASHRTSGIL ASSGGRATSS 701 750 ENSP00000318429/1-670 -LGHVTFGGL SSSTGHLPSH ITHGDPNTGH VTFGSTSASS GGHVTFRPVS ENSBTAP00000040922/1-693 NVGHVTFGDS SATTG----- ---------- -GLMSSRGSI PGRVTFRSPN ENSTTRP00000007377/1-375 NVGRVSFRDP SSSAG----H ATFGSTRPVT GTY-SSRGST EGRAIVTSPN bmy_06438T0/1-678 NVGRVTFGDP SSSAG----H TTFGSTSAIT GGLTSSRGXT AGRVISRSPN BACU002168/1-660 NVGRVTFGDP SSSAG----H TTFGSTSAVT GGLTSSRGST AGRVISRSPN 751 800 ENSP00000318429/1-670 ASSYLGSTGY VGSSRGGENT EGGVESGGTA SDSSGGLGSS RDHVSSTGPA ENSBTAP00000040922/1-693 SSSYLGSTGY VGSSRDHDSF ---EASKGPG SESSGGLGSS PGPASSPGPA ENSTTRP00000007377/1-375 SSSYPGSTGY LGSSRGHESF -GGPESKGPE SESSGGLKSS RGQVSSTGPA bmy_06438T0/1-678 SSSYLGSSGY LGSSRGHESF -GGPESKGPE SESSGGLESS RGQVSSTGPA BACU002168/1-660 SSSYLGSSGY LGSSRGHESF -GGSESKGPE SESSGGLESS RGQVSSTGPA 801 850 ENSP00000318429/1-670 SSTGPGSSTS KDSRG-- ENSBTAP00000040922/1-693 SSTGQASSTS KDSQSNY ENSTTRP00000007377/1-375 STTGRVSTTS KDSQSK- bmy_06438T0/1-678 SSTGRVSTTS KDSQSNY BACU002168/1-660 SSTGRVSTTS KDSQSNY