KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:14 2014 Check: 00 .. Name: ENSTTRP00000008312/1-628 Len: 925 Check: 1438 Weight: 1.00 Name: ENSP00000331363/1-627 Len: 925 Check: 4834 Weight: 1.00 Name: ENSBTAP00000040923/1-630 Len: 925 Check: 5928 Weight: 1.00 Name: bmy_06441T0/1-902 Len: 925 Check: 7397 Weight: 1.00 Name: BACU002167/1-759 Len: 925 Check: 2111 Weight: 1.00 // 1 50 ENSTTRP00000008312/1-628 ---MEPPPGT ATGQEEQELR ERAFFSWAEF SRFFDAWCQQ RLALFFVKSS ENSP00000331363/1-627 MERPEPPPGT AAGQEEQELR ERAFFSWAEF SRFFDAWCQQ RLALFFVKSS ENSBTAP00000040923/1-630 RPRMEPPPGT AAGQEEQELR ERAFFSWAEF SRFFDAWCQQ RLALFFVKSS bmy_06441T0/1-902 ---MEPPPGT ATGQEEQELR ERAFFSWAEF SRFFDAWCQQ RLALFFVKSS BACU002167/1-759 ---MEPPPGT ATGQEEQELR ERAFFSWAEF SRFFDAWCQQ RLALFFVKSS 51 100 ENSTTRP00000008312/1-628 MHLARCRWAS APPLYTLIDV LKYSYVRLVC KDVRAPSRPA VGSPQPGCPA ENSP00000331363/1-627 MHLARCRWAS APPLYTLIDV LKYSYVRLVC KDVRAPSRPA VGPPQPGCPA ENSBTAP00000040923/1-630 MHLARCRWAS APPLYTLIDV LKYSYVRLVC KDVRAPSRPA VGPPQPGCPA bmy_06441T0/1-902 MHLARCRWAS APPLYTLIDV LK-------- ---------- --SPQPGCPA BACU002167/1-759 MHLARCRWAS APPLYTLIDV LKYSYVRLVC KDVRAPSRPA VGSPQPGCPA 101 150 ENSTTRP00000008312/1-628 FIIVKLSPLR DRLVVTECQL THSHPACPLE FAYYFRPGHL LANACLPVRT ENSP00000331363/1-627 FIIVKLSPLR DRLVVTECQL THSHPACPLE FAYYFRPGHL LANACLPVRT ENSBTAP00000040923/1-630 FIIVKLSPLR DRLVVTECQL THSHPACPLE FAYYFRPGHL LANACLPVRT bmy_06441T0/1-902 FIIVKLSPLR DRLVVTECQL THSHPACPLE FAYYFRPGHL LANACLPVRT BACU002167/1-759 FIIVKLSPLR DRLVVTECQL THSHPACPLE FAYYFRPGHL LANACLPVRT 151 200 ENSTTRP00000008312/1-628 TNKISKQFVA PADVRRLLSY CKGRDHGVLD ALHVLEGLFR TDPEAKXXXX ENSP00000331363/1-627 TNKISKQFVA PADVRRLLSY CKGRDHGVLD ALHVLEGLFR TDPEAKVKLV ENSBTAP00000040923/1-630 TNKISKQFVA PADVRRLLSY CKGRDHGVLD ALHVLEGLFR TDPEAKVKLV bmy_06441T0/1-902 TNKISKQFVA PADVRRLLSY CKGRDHGVLD ALHVLEGLFR TDPEAKVKLV BACU002167/1-759 TNKISKQFVA PADVHRLLSY CKGRDHGVLD ALHVLEGLFR TDPEAKVKLV 201 250 ENSTTRP00000008312/1-628 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000331363/1-627 FVEDQAVVET VFFLTSRTRA LLRRFPRMLL VDRLPGLQGA LDLLAVLCVD ENSBTAP00000040923/1-630 FVEDQAVVET VFFLTSRTRA LLRRFPRMLL VDRLPGLQGA LDLLAVLCVD bmy_06441T0/1-902 FVEDQAVVET VFFLTSRTRA MLRRFPRMLL VDRLPGLQGA LDLLAVLCVD BACU002167/1-759 FVEDQAVVET VFFLTSRTRA MLRRFPRMLL VDRLPGLQGA LDLLAVLCVD 251 300 ENSTTRP00000008312/1-628 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000331363/1-627 GSGRARQAAC CVARPGTPSL LRFALASLLQ SAPDVKGRVR CLTAGPEVAA ENSBTAP00000040923/1-630 GAGRARQAAC CVARPGTPSL LRFALASLLQ SAPDVKGRVR CLTAGPEVAA bmy_06441T0/1-902 GAGRARQAAC CVARPGTPSL LRFALASLLQ SAPDVKGRVR CLTAGPEVAA BACU002167/1-759 GAGRARQAAC CVARPGTPSL L--------- ---------- ---------- 301 350 ENSTTRP00000008312/1-628 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000331363/1-627 QLPAVRQLLP CARVQICRAQ GLETLFSKAQ ELGGAGREDP GLWSRLCRLA ENSBTAP00000040923/1-630 QLPAVRQLLP GARVQICRAQ GLETLFSKAQ ELGGAGREDP GLWPRLCRLA bmy_06441T0/1-902 QLPAVRQLLP GARVQICRAQ GLETLFSKAQ ELGGAGREDP GLWPRLCRLA BACU002167/1-759 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000008312/1-628 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXPRRDMWVR FRAFEAARDL ENSP00000331363/1-627 GASSPAAYDE ALAELHAHGP AAFVDYFERN WEPRRDMWVR FRAFEAARDL ENSBTAP00000040923/1-630 GASSPAAYAE ALAELRAHGP AAFVDYFERN WAPRRDMWVR FRAFEAARDL bmy_06441T0/1-902 GALSPAAYAE ALAELRAHGP AAFVDYFERN WAPRRDMWVR FRAFEAARDL BACU002167/1-759 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000008312/1-628 DACALVRGHR RRLLRRLSPS RSVAQCLRDL VAMQWADAAG EAAPDVSDDG ENSP00000331363/1-627 DACALVRGHR RRLLRRLSPS RGVAQCLRDL VAMQWADAAG EAVPEGPDGG ENSBTAP00000040923/1-630 DACALVRGHR RRLLRRLSPS RSVAQCLRDL VAMQWADAAG EAAPDISDDA bmy_06441T0/1-902 DACALVRGHR RRLLRRLSPS RSVAQCLRDL VAMQWADAAG EAAPDVSDDG BACU002167/1-759 ---------- ---------- ---------- ----WADAAG EAAPDVSDDG 451 500 ENSTTRP00000008312/1-628 GAWLEGELGR GAQVENERMK GVETGNWGGA RKEGSFRREA QLEKEWARGL ENSP00000331363/1-627 GPWLEDEPGR GAQGENERVR GLETGDWGGA PKEGSIWRGA QMEKEWARAL ENSBTAP00000040923/1-630 GPWPEGEPGR GAQVENQRLK GLETRDWGGA WKEGSFWREA QVEKEWARGL bmy_06441T0/1-902 GPWLEGELGR GAQVENERVK ALETGNWGGA RKEGSFRREA QLEKEWARGL BACU002167/1-759 GPWLEGELGR GAQLENERMK GLETGNWGGA RKEGSFRREA QLEKEWARGL 501 550 ENSTTRP00000008312/1-628 ETRDREGAQV EGEKGRGLQI RDWRGVHLEN QKVRGLEGSV WRGSQLENEH ENSP00000331363/1-627 ETRDWGGAQF EGEKGRALQI RDWRGGRLEN QKPRGLEGGV LRGSKLEKGH ENSBTAP00000040923/1-630 ETRDRGGAQV ESEKGRGLQI RDWRGVQLEN Q-VRELEGSV WRGSQLEKER bmy_06441T0/1-902 ETRDREGAQV ESEKGRGLQI RDWRGVHLEN QKVRGLEGSV WRGSQLENEH BACU002167/1-759 ETRDREGAQV ESEKGRGLQI RDWRGVHLEN QKVRGLEGSV WRGSQLENEH 551 600 ENSTTRP00000008312/1-628 LRGPAIRDWR GGPLEGEKDW GLEGYIWRGA QVEDQRLRGL EEYTWRLAQL ENSP00000331363/1-627 LRGPEIRDWR GPQLEGEKDW GLEGYVWRGS QLEDQALRGL EGYTWRVAQL ENSBTAP00000040923/1-630 LRAPEIRDWR GGPLEGEKDW GLEGYIWRGA QVEDQRLRGL EGYTWRLAQL bmy_06441T0/1-902 LRGPAIRDWR GGPLEGEKDW GLEDYIWRGA QVEGQRLRGL EEYTWRLAQL BACU002167/1-759 LRGPAIRDWR GGPLEGEKDW GLEDYIWRGA QVEGQRLRGL EEYTWRLAQL 601 650 ENSTTRP00000008312/1-628 EDGRIRLLET PDGRGTLFDY ERGKNGGMKK K--------- ---------- ENSP00000331363/1-627 EDRR----ST TDLRGTQFDY ERGKGESTED R--------- ---------- ENSBTAP00000040923/1-630 EDRKVRVLET ADGRGTQFDC ERVRSHDGSS W--------- ---------- bmy_06441T0/1-902 EDGRIRLLET PDGRGTLFDY ERASSLDGGS WRGAQLHDER VSGLKTRDWK BACU002167/1-759 EDGRIRLLET PDGRGTLFDY ERASSLDGSS WRGAQLHDER VSGLKTRDWK 651 700 ENSTTRP00000008312/1-628 ---------- ---------- ---------- ---------- ---------- ENSP00000331363/1-627 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040923/1-630 ---------- ---------- ---------- ---------- ---------- bmy_06441T0/1-902 GPHLEAEKER GLEVRNWRRF HVEKPLDLVP ENGDLRGPQW GDGRQRGPEA BACU002167/1-759 GPHLEAEKER GQEVRNWRKV HVEKPLELVP ENGYLRGPQW GDGRQRGPEA 701 750 ENSTTRP00000008312/1-628 ---------- ---------- ---------- ---------- ---------- ENSP00000331363/1-627 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040923/1-630 ---------- ---------- ---------- ---------- ---------- bmy_06441T0/1-902 REERAVRLGV KRRRDLEDVV LVQLGDTRVT GLENGDGGGA QAGGPKSRGG BACU002167/1-759 REERAVRLGV KRRRELEDVV LVQLGDTRVT GLENGDEGGD QAGSPKSRGG 751 800 ENSTTRP00000008312/1-628 ---------- ---------- ---------- ---------- ---------- ENSP00000331363/1-627 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040923/1-630 ---------- ---------- ---------- ---------- ---------- bmy_06441T0/1-902 QGMECGDTAG GRLGLGNGGT CSTPVGTVLE GDPEWAVTRR TYLAAGESPQ BACU002167/1-759 QGMECGDTAG GRLGLGNGGT CSTPVGTVLE GDPEWAVTRR TYLAAGESAQ 801 850 ENSTTRP00000008312/1-628 ---------- ---------- ---------- ---------- ---------- ENSP00000331363/1-627 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040923/1-630 ---------- ---------- ---------- ---------- ---------- bmy_06441T0/1-902 EGSGGEGPRA SKRPCCPSEE EEVDWEPLAK FRAACGPELA ELVAEELAFA BACU002167/1-759 EGSGGEGPRA SKRPCCPSEE EEVDWEPLAK FRAACGPELA ELVAEELAFA 851 900 ENSTTRP00000008312/1-628 ---------- ---------- ---------- ---------- ---------- ENSP00000331363/1-627 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040923/1-630 ---------- ---------- ---------- ---------- ---------- bmy_06441T0/1-902 RQHGTRGFHW TGAGFALKDG TSDFFLDGAL TRCSCSIHAA RRLPCRHLFA BACU002167/1-759 RQHGTRGFHW TGDGFALKDG TSDFFLDGAL TRCSCSIHAA RRLPCRHLFA 901 950 ENSTTRP00000008312/1-628 ---------- ---------- ----- ENSP00000331363/1-627 ---------- ---------- ----- ENSBTAP00000040923/1-630 ---------- ---------- ----- bmy_06441T0/1-902 ARLLTGAALF HMDLLRDCWG RAPEP BACU002167/1-759 ARLLTGAALF HMDLLRDCWG RAPEP