KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:14 2014 Check: 00 .. Name: ENSP00000308895/1-591 Len: 607 Check: 7153 Weight: 1.00 Name: ENSBTAP00000040932/1-504 Len: 607 Check: 7284 Weight: 1.00 Name: ENSTTRP00000003441/1-545 Len: 607 Check: 843 Weight: 1.00 Name: bmy_19415T0/1-502 Len: 607 Check: 3028 Weight: 1.00 Name: BACU018787/1-479 Len: 607 Check: 9380 Weight: 1.00 // 1 50 ENSP00000308895/1-591 MVPSSPAVEK QVPVEPGPDP ELRSWRHLVC YLCFYGFMAQ IRPGESFITP ENSBTAP00000040932/1-504 MALSVPEVEK QMPAEPQPGH EQQSWWCLVF FLCFYGFMAQ MRPGESFITP ENSTTRP00000003441/1-545 MALSGPEVEK QVPAEPRPGR KLQSWWSLVF CLCFYGFMAQ MRPGESFITP bmy_19415T0/1-502 MALCGPEVEK QVPAEPRPGR KLQSWWSLVF CLCFYGFMSQ MRPGESFITP BACU018787/1-479 MALSGPEVEK QVPAEPRPGC KLQSWWSLAF CLCFYGFMSQ MRPGESFITP 51 100 ENSP00000308895/1-591 YLLGPDKNFT RE-------- ----QVTNEI TPVLSYSYLA VLVPVFLLTD ENSBTAP00000040932/1-504 YLLGPDKNFT QT-------- ----QVTNEI TPVLSYSYLA VLVPIFLLTD ENSTTRP00000003441/1-545 YLLGPDKNFT QKQ------- ----XXXXXX XXXSSYSYLA VLVPIFLLTD bmy_19415T0/1-502 YLLGPDKNFT QQ-------- ----QVTNEI TPVLSYSYLA VLVPVFLLTD BACU018787/1-479 YLLGPDKNFT QKQARAWGHT PAVLQVPNEI TPVLSYSYLA VLVPVFLLTD 101 150 ENSP00000308895/1-591 YLRYTPVLLL QGLSFVSVWL LLLLGHSVAH MQLMELFYSV TMAARIAYSS ENSBTAP00000040932/1-504 YLCYKPVLLL QGLSYVSVWL LLLFGSTVLH MQFMEFFFSI TMAARIAYSS ENSTTRP00000003441/1-545 YLRYKPVLVL QGLSYVSVWL LLLFGSSVLH MQFMEFFFSI TMAARIAYSS bmy_19415T0/1-502 YLRYKPVLLL QGLSYVSVWL LLLFGSSVLH MQFMEVFFSV TMAARIAYSS BACU018787/1-479 YLRYKPVLLL QGLSYVSVWL LLLFGSSVLH MQFMEFFFSI TMAARIAYSS 151 200 ENSP00000308895/1-591 YIFSLVRPAR YQRVAGYSRA AVLLGVFTSS VLGQLLVTVG RVSFSTLNYI ENSBTAP00000040932/1-504 YIFSLVPPAR YQRMASYSRA SVLLGVFTSS VLGQLLVTVG RVAFSTLNYI ENSTTRP00000003441/1-545 YIFSLVPPAC YQRMAGYSRA SVLLGVFTSS VLGQLLVTMG RVPFSTLNYI bmy_19415T0/1-502 YIFSLVPPAC YQRMAGYSRA SVLLGVFTSS VLGQLLVTVG RIPFSTLNYI BACU018787/1-479 YIFSLVPPAC YQRMAGYSRA SVLLGVFTSS VLGQLLVTVG RIPFSTLNYI 201 250 ENSP00000308895/1-591 SLAFLTFSVV LALFLKRPKR SLFFNRDDRG RCETSASELE RMNPG----P ENSBTAP00000040932/1-504 SLAFLTFSLV LALFLKRPRR SLFFNHGVPE PAGAAPSELD QMKPGQAKAA ENSTTRP00000003441/1-545 SLAFLTFSLV LTFFLKRPER SLFFNRGARE --GASPSELD RMNLGQGQPT bmy_19415T0/1-502 SLAFLAFSLV LTLFLKRPKR SLFFNRAAPA CAGASPSELD RMNLGQVQPT BACU018787/1-479 SLAFLAFSLV LT-------- ---------- ---------- -------RPT 251 300 ENSP00000308895/1-591 GGKLGHALRV ACGDSVLARM LRELGDSLRR PQLRLWSLWW VFNSAGYYLV ENSBTAP00000040932/1-504 EKKPGW-LP- ---NSTFVRM PGELGRAVRL PQLRLWSLWW VFNSAGYYLI ENSTTRP00000003441/1-545 GGKLGR-LPA SWRDSVLAHM LRELRRTARL PQLRLWSLWW VFNSAGYYLI bmy_19415T0/1-502 GGKPGR-LPA SWRDSALAHM LRELGHTARL PQLRLWSLWW VFNSAGYYLV BACU018787/1-479 GGKRGQ-LPA SWRDSALAHM LRELGHTARL PQLRLWSLWW VFNSAGYYLI 301 350 ENSP00000308895/1-591 VYYVHILWNE VDPTTNSARV YNGAADAAST LLGAITSFAA GFVKIRWARW ENSBTAP00000040932/1-504 VYYVHILWNV VHPTTDTTRV YNGAADAAST LLGALTSFAA GFVKIRWALW ENSTTRP00000003441/1-545 VYYVHILWNV VNPTTDTTRV YNGGADAAST LL-----FAA GFVKIRWALW bmy_19415T0/1-502 VYYVHILWNV VNPTADTTRV YNGGADAAST LLGAITSFAA GFVKLRWALW BACU018787/1-479 VYYVHILWNV VNPTTDTTRV YNGGADATST LLGAITSFAA GFVKIRWALW 351 400 ENSP00000308895/1-591 SKLLIAGVTA TQAGLVFLLA HTRHPSSIWL CYAAFVLFRG SYQFLVPIAT ENSBTAP00000040932/1-504 ARLVIAVVTV LQAGLVFLMY KT---DDIWL CYAAFVLFRG SYQFLVPIAT ENSTTRP00000003441/1-545 AELIIAVVTV LQAGLVFLMY RT---SSIWL CYSAFVLFRG SYQFLVPIAT bmy_19415T0/1-502 AKLIIAVVTG LQAGLVFLMY TT---SNVWL CCSAFVLFRG SYQFLVPXAT BACU018787/1-479 AKLIIAVVTV LQAGLIFLMY KT---SNIWL CYSAFVLFRG SHQLLVPIAT 401 450 ENSP00000308895/1-591 FQIASSLSKE LCALVFGVNT FFATIVKTII TFIVSDVRGL GLPVRKQFQL ENSBTAP00000040932/1-504 FQIAASLSQE LRALVFGINT FLATVLKTVI TLIVSDKRGL GLPVHSQFLV ENSTTRP00000003441/1-545 FQIASSLSQE LRALVFGVNT FLATVLKTII TLVVSDKRGL GLPVRSQFLV bmy_19415T0/1-502 FQIASSLSQE LRALVFGVNT FLATVLKTII TLVVSDKRGL GLPVRSQFLI BACU018787/1-479 FQIASSLSQE LRALVFGVNT FLATVLKTII TLVVSDKRGL GLPVRSQFLI 451 500 ENSP00000308895/1-591 YSVYFLILSI IYFLGAMLDG LRHCQRGHHP RQPPAQGLRS AAEEKAAQAL ENSBTAP00000040932/1-504 YFVYFLVLFA AYFLAAVLVG LRHFQQSRHQ PLPAAQELMS PMQEKATQD- ENSTTRP00000003441/1-545 YFVYFLVLFV AYVLAALLTG LRHFRQGHRQ PPPPAQELMS PMREPAAQD- bmy_19415T0/1-502 YFVYFLVLFV AYVLAALLSG LRHFRQGRHQ PLPPAQELMS PVQEQATQD- BACU018787/1-479 YFVYFLVLFV AYVLAALLSG LRHFRQGRPQ PLPPAQELMS PVQEQGVQD- 501 550 ENSP00000308895/1-591 SVQDKGLGGL QPAQSPPLSP EDSLGAVGPA SLEQRQSDPY LAQAPAPQAA ENSBTAP00000040932/1-504 -------GAQ LPA------L EDGVFAVG-- --ELSPQ--- ---------- ENSTTRP00000003441/1-545 -------G-- -P-------P EDGVRAVG-- --EQRQSGQG LTPPPGRWAA bmy_19415T0/1-502 -------G-- -PA------P EDGVWAVG-- --EQ------ ---------- BACU018787/1-479 -------G-- -PA------P EDGVWATG-- --EQ------ ---------- 551 600 ENSP00000308895/1-591 EFLSPVTTPS PCTLCSAQAS GPEAADETCP QLAVHPPGVS KLGLQCLPSD ENSBTAP00000040932/1-504 ----S----- -----EAKA- ---------- ---------- ---------- ENSTTRP00000003441/1-545 RFLTP----- -----DAAGL GLSELTRSQA ACLGVGPGFR HRPIQIVGW- bmy_19415T0/1-502 ----P----- -----EAKT- ---------- ---------- ---------- BACU018787/1-479 ----P----- -----EAKA- ---------- ---------- ---------- 601 650 ENSP00000308895/1-591 GVQNVNQ ENSBTAP00000040932/1-504 ------- ENSTTRP00000003441/1-545 ------- bmy_19415T0/1-502 ------- BACU018787/1-479 -------