KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:16 2014 Check: 00 .. Name: ENSTTRP00000009180/1-690 Len: 691 Check: 8260 Weight: 1.00 Name: ENSP00000360112/1-678 Len: 691 Check: 8075 Weight: 1.00 Name: ENSBTAP00000040959/1-653 Len: 691 Check: 657 Weight: 1.00 Name: bmy_19023T0/1-497 Len: 691 Check: 2324 Weight: 1.00 Name: BACU000193/1-277 Len: 691 Check: 4016 Weight: 1.00 // 1 50 ENSTTRP00000009180/1-690 MATAAAGAGG EGGAGLGDAA GPEPESGPRG PDPSAEARND ARGPAPAALH ENSP00000360112/1-678 MAAAAGDGGG EGGAGLGSAA GLGPGPGLRG QGPSAEAHEG APDPMPAALH ENSBTAP00000040959/1-653 KMAAAGDGGG EGGAA----- --APGSGPRG PSPFSEARGD ARGPVPAALH bmy_19023T0/1-497 ---------- ---------- ---------- ---------- ---------- BACU000193/1-277 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009180/1-690 PEEVAARLQR MRRELSNRRK ILVKNLPQDS NCQEVHDLLQ DYELKYCYVD ENSP00000360112/1-678 PEEVAARLQR MQRELSNRRK ILVKNLPQDS NCQEVHDLLK DYDLKYCYVD ENSBTAP00000040959/1-653 PEEVAARLQR MRRELSNRRK ILVKNLPQDS SCQEVHDLLQ DYELKYCYVD bmy_19023T0/1-497 ---------- ---------- ---------- ---------- ---------- BACU000193/1-277 ---------- MRRELSNRRK ILVKNLPQDS NCQEVHDLLQ DYELKYCYVD 101 150 ENSTTRP00000009180/1-690 RNKRTAFVTL LNGEQAQNAI QMFHQYSFRG KDLIVQLQPT DALLCITNLP ENSP00000360112/1-678 RNKRTAFVTL LNGEQAQNAI QMFHQYSFRG KDLIVQLQPT DALLCITNVP ENSBTAP00000040959/1-653 RNKRTAFVTL LNGEQAQNAI QMFHQYSFRG KDLVVQLQPT DALLCITNLP bmy_19023T0/1-497 ---------- ---------- -MFHQYSFRG KDLIVQLQPT DALLCITNLP BACU000193/1-277 RNKRTAFVTL LNGEQAQNAI QMFHQYSFRG KDLIVQLQPT DALLCITNLP 151 200 ENSTTRP00000009180/1-690 TSFTLEEFEE LVRAYGNVER CKMVYSXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000360112/1-678 ISFTSEEFEE LVRAYGNIER CFLVYSEVTG HSKGYGFVEY MKKDFAAKAR ENSBTAP00000040959/1-653 TSFTLEEFEE LVRAYGNVER CFLVYSEVTG HSKGYGFVEY MKKDFAAKAR bmy_19023T0/1-497 ASFTLEEFEE LVRAYGNVER CFLVYSEVTG HSKGYGFVEY MKKDFAAKAR BACU000193/1-277 ASFTLEEFEE LVRAYGNVER CFLVYSEVTG HSKGYGFVEY MKKDFAAKAR 201 250 ENSTTRP00000009180/1-690 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000360112/1-678 LELLGRQLGA SALFAQWMDV NLLASELIHS KCLCIDKLPS DYRDSEELLQ ENSBTAP00000040959/1-653 LELLGKQLGA SVVFAQWMDV NLLAAELIHS KCLCIDKLPS DYRDSEELLQ bmy_19023T0/1-497 LELLGKQLGA SALFAQWMDV NLLATELIHS KCLCIDKLPS DYRDSEELLQ BACU000193/1-277 LELLGKQLGA SALFAQWMDV NLLATELIHS KCLCIDKLPS DYRDSEELLQ 251 300 ENSTTRP00000009180/1-690 XXXXXXXXXX XXLAQDEGSY VGGFAVVEYS TAEHAEEVQQ AADGMTIKGS ENSP00000360112/1-678 IFSSVHKPVF CQLAQDEGSY VGGFAVVEYS TAEQAEEVQQ AADGMTIKGS ENSBTAP00000040959/1-653 FFSSIHKPVF CQLAQDEGSY VGGFAVVEYS TAEHAEEVQQ AADGMTIKGS bmy_19023T0/1-497 FFSSIHKPVF CQLAQDEGSY VGGFAVVEYS TAEHAEEVQQ AADGMTINGS BACU000193/1-277 FFSSIHKPVF CQLAQDEGSY VGGFAVVEYS TAEHAEEVQQ AADGMTINGS 301 350 ENSTTRP00000009180/1-690 KVQVSFCAPG APGRSTLAAL IAAQRVMHSN QKGLLPEPNP VQIMKSLNNP ENSP00000360112/1-678 KVQVSFCAPG APGRSTLAAL IAAQRVMHSN QKGLLPEPNP VQIMKSLNNP ENSBTAP00000040959/1-653 KVQVSFCAPG APGRSTLAAL IAAQRVRHSN QKGLLPEPNP VQIMKSLNNP bmy_19023T0/1-497 KVQVSFCAPG APGRSTLAAL IAAQRVMHSN QKGLLPEPNP VQIMKSLNNP BACU000193/1-277 KVQVSFCAPG APGRSTLAAL IAAQRVQ--- ---------- ---------- 351 400 ENSTTRP00000009180/1-690 AMLQVLLQPQ LCGRTVKPAV LGTPHSLPHL MNPSISPAFL HLNKAHQSSL ENSP00000360112/1-678 AMLQVLLQPQ LCGRAVKPAV LGTPHSLPHL MNPSISPAFL HLNKAH---- ENSBTAP00000040959/1-653 AMLQILLQPQ LCGRTVKPAV LGTPHSLPHL MNPSISPAFL PLNKAHQSSL bmy_19023T0/1-497 AMLQVLLQPQ LCGRTVKPAV LGTPHSLPHL MNPSISPAFL HLNKAHQSSL BACU000193/1-277 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000009180/1-690 MGNTSNLFLQ NLSHVPLAQQ QLMKFENIHT NNKPGLLGEP PAMVLQAAVG ENSP00000360112/1-678 ---------Q NLSHIPLAQQ QLMKFENIHT NNKPGLLGEP PAVVLQTALG ENSBTAP00000040959/1-653 MGNTSNLFLQ NLSHVPLAQQ QLMKFENIHT NNKPGLLGEP PAMVLQTAVG bmy_19023T0/1-497 MGNTSNLFLQ NLSHVPLAQQ QLMKFENIHT NNKPGLLGEP PAVVLQAAVG BACU000193/1-277 -------FLE HLTAC----- ---------- ---------- ---------- 451 500 ENSTTRP00000009180/1-690 IGSPLPLKTE LG-HLGETHK TSNLIPPQTT ITAGMGMLPF LPNQHIAGQA ENSP00000360112/1-678 IGSVLPLKKE LGHHHGEAHK TSSLIPTQTT ITAGMGMLPF FPNQHIAGQA ENSBTAP00000040959/1-653 IGSPLPLKTE LG-HLGEVHK TPNLIPTQTT ITTGMGMLPF LPNQHIAGQA bmy_19023T0/1-497 IGSPLPLKTE LG-HLGEAHK TSNLIPTQTT ITAGMGMLPF LPNQHIAGQA BACU000193/1-277 ---------- ---HI----- ---------- ---------- ---------- 501 550 ENSTTRP00000009180/1-690 GPGHGNTQEK QPALVGMAEG NFSGSQAYLQ SFPNLTAGGL LTGHHKQQQS ENSP00000360112/1-678 GPGHSNTQEK QPATVGMAEG NFSGSQPYLQ SFPNLAAGSL LVGHHKQQQS ENSBTAP00000040959/1-653 GPGHGSTQEK QPALVGMAEG NFSGSQTYLQ SFPNLTAGGL LTGHQKQQQS bmy_19023T0/1-497 GPGHGNTQEK QPALKEISQG H----RLIFR AFQTLLL--- --------EA BACU000193/1-277 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000009180/1-690 QPKGLEISSG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPA ENSP00000360112/1-678 QPKGTEISSG AASKNQTSLL GEPPKEIRLS KNPYLNLASV LPSVCLSSPA ENSBTAP00000040959/1-653 QPKGLEISSG AASKNQTSLL GEPPKEIRLS KNPYLNLASV LPSVCLSSPA bmy_19023T0/1-497 CSRDIINNNK AASKNQTSLL GEPPKEIRLS KNPYLNLA-- -------TPA BACU000193/1-277 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000009180/1-690 SKITLQKTGI ASNILDAISQ GNESQHTLEK CIAYSQPFGD YAQVSSLRNE ENSP00000360112/1-678 SKTTLHKTGI ASSILDAISQ GSESQHALEK CIAYSPPFGD YAQVSSLRNE ENSBTAP00000040959/1-653 SKTTVQKTGI ASNILDTISQ GNESQHTLEK CIAYSQPFGD YAQVPH---- bmy_19023T0/1-497 SKITLQKTGI ASNILDAISQ GNESQHTLEK CIAYSQPFGD YAQ------- BACU000193/1-277 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000009180/1-690 KRGSSYLVSA PEGGSVEFVD QHSQGTGAYY METYLKKKRV Y ENSP00000360112/1-678 KRGSSYLISA PEGGSVECVD QHSQGTGAYY METYLKKKRV Y ENSBTAP00000040959/1-653 ---------- ---------- ------SQVL MIYRTIASTI Y bmy_19023T0/1-497 ---------- ---------- ---------- ---------- - BACU000193/1-277 ---------- ---------- ---------- ---------- -