KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:17 2014 Check: 00 .. Name: bmy_00831T0/1-482 Len: 564 Check: 9443 Weight: 1.00 Name: ENSP00000360149/1-507 Len: 564 Check: 7722 Weight: 1.00 Name: ENSBTAP00000040988/1-507 Len: 564 Check: 6908 Weight: 1.00 Name: BACU019314/1-508 Len: 564 Check: 9870 Weight: 1.00 Name: ENSTTRP00000007075/1-509 Len: 564 Check: 3786 Weight: 1.00 // 1 50 bmy_00831T0/1-482 MLNTKKNGDS VRVLNSIVNS VTFSVHIVIR KHWREEAQLT EQVLTESAGK ENSP00000360149/1-507 -------MEK WYLMTVVV-- ---LIGLTVR --WTVSLN-- ---SYSGAGK ENSBTAP00000040988/1-507 -------MEK WYLMTAAV-- ---LLGLTVR --WTVSLN-- ---SYSGAGK BACU019314/1-508 -------MEK CYLMTAVV-- ---LLGLTVR --WTVSLN-- ---SYSGAGK ENSTTRP00000007075/1-509 -------MEK CYLMTAVV-- ---LLGLTVR --WTVSLN-- ---SYSGAGK 51 100 bmy_00831T0/1-482 PPMFGDYEAQ RHWQEITINL PIKQWYFNGS DNNLQYWGLD YPPLTAYHSL ENSP00000360149/1-507 PPMFGDYEAQ RHWQEITFNL PVKQWYFNSS DNNLQYWGLD YPPLTAYHSL ENSBTAP00000040988/1-507 PPMFGDYEAQ RHWQEITFNL PIKQWYFNSS DNNLQYWGLD YPPLTAYHSF BACU019314/1-508 PPMFGDYEAQ RHWQEITINL PIKQWYFNGS DNNLQYWGLD YPPLTAYHSL ENSTTRP00000007075/1-509 PPMFGDYEAQ RHWQEITINL PIKQWYFNGS DNNLQYWGLD YPPLTAYHSL 101 150 bmy_00831T0/1-482 LCAYVAKFIN PDWIALHTSR GYESQAHKLF MRATVLIADL LIYIPAVVLY ENSP00000360149/1-507 LCAYVAKFIN PDWIALHTSR GYESQAHKLF MRTTVLIADL LIYIPAVVLY ENSBTAP00000040988/1-507 LCAYVAKFIN PDWIALHSSR GYESQAHKLF MRATVLIADL LIYIPAVVLY BACU019314/1-508 LCAYVAKFIN PDWIALHTSR GYESQAHKLF MRATVLIADL LIYIPAVVLY ENSTTRP00000007075/1-509 LCAYVAKFIN PDWIALHTSR GYESQAHKLF MRATVLIADL LIYIPAVVLY 151 200 bmy_00831T0/1-482 CCCLKEISAK KKIANALCIL LYPGLILIDY GHFQ------ ---------- ENSP00000360149/1-507 CCCLKEISTK KKIANALCIL LYPGLILIDY GHFQ--YNSV SLGFALWGVL ENSBTAP00000040988/1-507 CCCLKEISTK KKIATALCIL LYPGLILIDY GHFQ--YNSV SLGFALWGIL BACU019314/1-508 CCCLKEISTK KKIANALCIL LYPGLILIDY GHFQNIYNSV SLGFALWGVL ENSTTRP00000007075/1-509 CCCLKEISTK KKIANALCIL LYPGLILIDY GHFQNIYNSV SLGFALWGVL 201 250 bmy_00831T0/1-482 ---------- ---------- ---------- ---------- --------LV ENSP00000360149/1-507 GISCDCDLLG SLAFCLAINY KQMELYHALP FFCFLLGKCF KKGLKGKGFV ENSBTAP00000040988/1-507 GVSYDWDLLG SLAFCLAINY KQMELYHSLP FFCFLLGKCF KKGLKGKGLV BACU019314/1-508 GVSYDWDLLG SLAFCLAINY KQMELYHSLP FFCFLLGKCF KKGLKGKGLV ENSTTRP00000007075/1-509 GVSYDWDLLG SLAFCLAINY KQMELYHSLP FFCFLLGKCF KKGLKGKGFV 251 300 bmy_00831T0/1-482 LLIKLACTVV ASFILCWLPF FTEREQTLQV LRRLFP---- ---DKVANIW ENSP00000360149/1-507 LLVKLACIVV ASFVLCWLPF FTEREQTLQV LRRLFPVDRG LFEDKVANIW ENSBTAP00000040988/1-507 LLIKLACTVV ASFILCWLPF FTEREQTLQV LRRLFPVDRG LFEDKVANIW BACU019314/1-508 LLIKLACTVV ASFILCWLPF LTEREQTLQV LRRLFPVDRG LF-EALANIW ENSTTRP00000007075/1-509 LLIKLACTVV ASFILCWLPF FTEREQTLQV LRRLFPVDRG LFEDKVANIW 301 350 bmy_00831T0/1-482 CTFSVFLKIR DILPHHIQIM ISFCFTFLSL LPACIKLTLH PSPKGFKFTL ENSP00000360149/1-507 CSFNVFLKIK DILPRHIQLI MSFCSTFLSL LPACIKLILQ PSSKGFKFTL ENSBTAP00000040988/1-507 CSFSVFFKIR DILPHHIQIM ISFCFTFLSL LPACIKLTLH PSPKGFRFTL BACU019314/1-508 CTFSVFLKIR DILPHHIQIM ISVCFTFLSL LPACIKLTLH PSPKGFKFTL ENSTTRP00000007075/1-509 CTFSVFLKIR DILPHHIQLM ISFCFTFLSL LPACIKLTLH PSPRGFRFTL 351 400 bmy_00831T0/1-482 VSCALSFFLF SFQVHEKSIL LVSLPVCLVL REIPFMSTWF LLVSTFSMLP ENSP00000360149/1-507 VSCALSFFLF SFQVHEKSIL LVSLPVCLVL SEIPFMSTWF LLVSTFSMLP ENSBTAP00000040988/1-507 VSCALSFFLF SFQVHEKSIL LVSLPVCLVL SEIPFMSTWF LLVSTFSMLP BACU019314/1-508 VSCALSFFLF SFQVHEKSIL LVSLPVCLVL REIPFMSTWF LLVSTFSMLP ENSTTRP00000007075/1-509 VSCALSFFLF SFQVHEKSIL LVSLPVCLVL REIPFMSTWF LLVSTFSMLP 401 450 bmy_00831T0/1-482 LLLKDELLMP SVVTVMAFFI ACATSFSIFE KTSEEELQLK SFSIS--EIF ENSP00000360149/1-507 LLLKDELLMP SVVTTMAFFI ACVTSFSIFE KTSEEELQLK SFSISVRKYL ENSBTAP00000040988/1-507 LLLKDELLMP SVVTVMAFFI ACATSFSIFE KTSEEELQLK CFSTSVRKYF BACU019314/1-508 LLLKDELLMP SVVTVMAFFI ACATSFSIFE KTSEEDLQLK SFSISVRKYF ENSTTRP00000007075/1-509 LLLKDELLMP SVVTVIAFFI ACATSFSIFE KTSEEELQLK SFSISVRKYF 451 500 bmy_00831T0/1-482 SMFYISSQNY TTFVSYLSNH YGSSDTDDCH TGSSSETTGL VFCIGVFCIL ENSP00000360149/1-507 PCF------- -TFLSRIIQY ---------- ---------- LFLISVITMV ENSBTAP00000040988/1-507 TCF------- -TFLPRIIQH ---------- ---------- LFLMSVITMI BACU019314/1-508 PCF------- -TFLPRIIQH ---------- ---------- LFLISVITMV ENSTTRP00000007075/1-509 PCF------- -TFLPRIIQH ---------- ---------- LFLISVITMV 501 550 bmy_00831T0/1-482 LKLPVLLGIL QHYNHVGFQK RKKSEEDQLA ISPKKCENVN SATSFCEIFA ENSP00000360149/1-507 L-LTLMTVTL D-------PP QKLPDLFSVL VCFVSCLNFL FFLVYFNIII ENSBTAP00000040988/1-507 L-LTTMTVTL D-------PP QKLPDLFAVL VCFVSCLHFL FFLVYFTIII BACU019314/1-508 L-LTLMIVTL D-------PP QKLPDLFSVL VCFVSCLNFL FFLVYFNIII ENSTTRP00000007075/1-509 L-LTLMTVTL D-------PP QKLPDLFSVL VCFVSCLNFL FFLVYFNIII 551 600 bmy_00831T0/1-482 VYKKK----- ---- ENSP00000360149/1-507 MWDSKSGRNQ KKIS ENSBTAP00000040988/1-507 MWDSKTGRSQ KKIS BACU019314/1-508 MWDSKNGRNQ KKIN ENSTTRP00000007075/1-509 MWDSKNGRNQ KKIN