KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:17 2014 Check: 00 .. Name: ENSBTAP00000040996/1-356 Len: 357 Check: 2829 Weight: 1.00 Name: ENSP00000354201/1-354 Len: 357 Check: 8933 Weight: 1.00 Name: bmy_09796T0/1-266 Len: 357 Check: 5269 Weight: 1.00 Name: BACU006403/1-292 Len: 357 Check: 3711 Weight: 1.00 Name: ENSTTRP00000005667/1-248 Len: 357 Check: 2809 Weight: 1.00 // 1 50 ENSBTAP00000040996/1-356 MAESPTEEAA TATAGAGAAG PGASGVTGVV GVSGSGGGFG PPFLPDVWAA ENSP00000354201/1-354 MAESPTEEA- -ATAGAGAAG PGASSVAGVV GVSGSGGGFG PPFLPDVWAA bmy_09796T0/1-266 MAESPTEEA- -ATAGAGAAG PGASGVAGVV GVSG-GGGFG PPFLPDVWAA BACU006403/1-292 MAESPTEEA- -ATAGAGAAG PGASGVAGVV GVSG-GGGFG PPFLPDVD-- ENSTTRP00000005667/1-248 ---------- ---------- ---------- ---------- -------D-- 51 100 ENSBTAP00000040996/1-356 AAAAGGAGGP GSGLAPLPGL PPSAAAHGAA LLSHWDPTLS SDWDGERTAP ENSP00000354201/1-354 AAAAGGAGGP GSGLAPLPGL PPSAAAHGAA LLSHWDPTLS SDWDGERTAP bmy_09796T0/1-266 AAAAGGAGGP GSGLAPLPG- ---------- ---------- ---------- BACU006403/1-292 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005667/1-248 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000040996/1-356 QCLLRIKRDI MSIYKEPPPG MFVVPDTVDM TKIHALITGP FDTPYEGGFF ENSP00000354201/1-354 QCLLRIKRDI MSIYKEPPPG MFVVPDTVDM TKIHALITGP FDTPYEGGFF bmy_09796T0/1-266 ---------- ---------- ---------- ---------- ---------- BACU006403/1-292 ---------I MSIYKEPPPG MFVVPDTVDM TKIHALITGP FDTPYEGGFF ENSTTRP00000005667/1-248 ---------I MSIYKEPPPG MFVVPDTVDM TKIHALITGP FDTPYEGGFF 151 200 ENSBTAP00000040996/1-356 LFVFRCPPDY PIHPPRVKLM TTGNNTVRFN PNFYRNGKVC -LSILGTWTG ENSP00000354201/1-354 LFVFRCPPDY PIHPPRVKLM TTGNNTVRFN PNFYRNGKVC -LSILGTWTG bmy_09796T0/1-266 -----LPPSA AAH--GAALL SHWDPTLSSD WDGERTAPQC LLRIKRTWTG BACU006403/1-292 LFVFRCPPDY PIHPPRVKLM TTGNNTVRFN PNFYRNGKVC -LSILGTWTG ENSTTRP00000005667/1-248 LFVFRCPPDY PIHPPRVKLM TTGNNTVRFN PNFYRNGKVC -LSILGTWTG 201 250 ENSBTAP00000040996/1-356 PAWSPAQSIS SVLISIQSLM TENPYHNEPG FEQERHPGDS KNYNECIRHE ENSP00000354201/1-354 PAWSPAQSIS SVLISIQSLM TENPYHNEPG FEQERHPGDS KNYNECIRHE bmy_09796T0/1-266 PAWSPAQSIS SVLISIQSLM TENPYHNEPG FEQERHPGDS KNYNECIRHE BACU006403/1-292 PAWSPAQSIS SVLISIQSLM TENPYHNEPG FEQERHPGDS KNYNECIRHE ENSTTRP00000005667/1-248 PAWSPAQSIS SVLISIQSLM TENPYHNEPG FEQERHPGDS KNYNECIRHE 251 300 ENSBTAP00000040996/1-356 TIRVAVCDMM EGKCPCPEPL RGVMEKSFLE YYDFYEVACK DRLHLQGQTM ENSP00000354201/1-354 TIRVAVCDMM EGKCPCPEPL RGVMEKSFLE YYDFYEVACK DRLHLQGQTM bmy_09796T0/1-266 TIRVAVCDMM EGKCPCPEPL RGVMEKSFLE YYDFYEVACK DRLHLQGQTM BACU006403/1-292 TIRVAVCDMM EGKCPCPEPL RGVMEKSFLE YYDFYEVACK DRLHLQGQTM ENSTTRP00000005667/1-248 TIRVAVCDMM EGKCPCPEPL RGVMEKSFLE YYDFYEVACK DRLHLQGQTM 301 350 ENSBTAP00000040996/1-356 QDPFGEKRGH FDYQSLLMRL GLIRQKVLER LHNENTEMDS DSSSSGTETD ENSP00000354201/1-354 QDPFGEKRGH FDYQSLLMRL GLIRQKVLER LHNENAEMDS DSSSSGTETD bmy_09796T0/1-266 QDPFGEKRGH FDYQSLLMRL GLIRQKVLER LHNENAEMDS DSSSSGTETD BACU006403/1-292 QDPFGEKRGH FDYQSLLMRL GLIRQKVLER LHNENAEMDS DSSSSGTETD ENSTTRP00000005667/1-248 QDPFGEKRGH FDYQSLLMRL GLIRQKVLER LHNENAEMDS DSSSSGTETD 351 400 ENSBTAP00000040996/1-356 LHGSLRV ENSP00000354201/1-354 LHGSLRV bmy_09796T0/1-266 LHGSLRV BACU006403/1-292 LHGSLRV ENSTTRP00000005667/1-248 LHGSLRV