KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:18 2014 Check: 00 .. Name: ENSP00000397908/1-975 Len: 985 Check: 9367 Weight: 1.00 Name: ENSBTAP00000040997/1-935 Len: 985 Check: 5762 Weight: 1.00 Name: ENSTTRP00000012499/1-929 Len: 985 Check: 2511 Weight: 1.00 Name: bmy_07130T0/1-925 Len: 985 Check: 1875 Weight: 1.00 Name: BACU016767/1-930 Len: 985 Check: 2486 Weight: 1.00 // 1 50 ENSP00000397908/1-975 MGEQDGIRSS SWETSQGKSS PDSAWSWIPI MRDPGWIRNV WSSNI-NVQT ENSBTAP00000040997/1-935 ---------- ---------- ---------- ---------- --------QT ENSTTRP00000012499/1-929 ---------- ---------- ---------- ---------- -------AQT bmy_07130T0/1-925 ---------- --MKVEGNDE GEKGLTKVVI LRVVFIETVL HSLTFAKAQT BACU016767/1-930 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000397908/1-975 MNYVGQLAGQ VFVTVKELYK GLNPATLSGC IDIIVIRQPN GNLQCSPFHV ENSBTAP00000040997/1-935 MNYVGQLAGQ VFVTVKELYK GLNPATLSGC IDIIVVRQPN GSLQCSPFHV ENSTTRP00000012499/1-929 MNYVGQLAGQ VFVTVKELYK GLNPATLSGC IDIIVVRQPT GHLQCSPFHV bmy_07130T0/1-925 MNYVGQLAGQ VFVTVKELYK GLNPATLSGC IDIIVVRQPN GSLQCSPFHV BACU016767/1-930 MNYVGQLAGQ VFVTVKELYK GLNPATLSGC IDIIVVRQPN GSLQCSPFHV 101 150 ENSP00000397908/1-975 RFGKMGVLRS REKVVDIEIN GESVDLHMKL GDNGEAFFVQ ETDNDQEVIP ENSBTAP00000040997/1-935 RFGKMGVLRS REKVVDIEIN GESVDLHMKL GDNGEAFFVQ ETDNDQEVIP ENSTTRP00000012499/1-929 RFGKMG-LRS REKVVDIEIN GEAVDLHMKL GDNGEAFFVQ ETDNDQEVIP bmy_07130T0/1-925 RFGKMGVLRS REKVVDIEIN GEAVDLHMKL GDNGEAFFVQ ETDNDQEVIP BACU016767/1-930 RFGKMGVLRS REKVVDIEIN GEAVDLHMKL GDNGEAFFVQ ETDNDQEVIP 151 200 ENSP00000397908/1-975 MHLATSPILS EGASRMECQL KRGSVDRMRG LDPSTPAQVI APSETPSSSS ENSBTAP00000040997/1-935 MHLATSPILS EGASRMESQL KRNSTDRIRG LDTNTSAQVS PPSETPSSGS ENSTTRP00000012499/1-929 VHLATSPILS EGASRMESQL RRSSVDWMRS LDPNTSVQVL PPSETPSSGS bmy_07130T0/1-925 MHLATSPILS EGASRMESQL KRNSVDWIRS LDPNTSAQVL PPSETPSSGS BACU016767/1-930 MHLATSPILS EGASRMESQL KRNSVDWIRS LDPNTSAQVL PPSETPSSGS 201 250 ENSP00000397908/1-975 VVKKRRKRRR KSQLDSLKRD DNMNTSEDED MFPIEMSSDE AMELLESSRT ENSBTAP00000040997/1-935 LVKKRRKRRR KSQLDSLKRD ENMNTSEDED MFPIEMSSDE EAEPLDSSRT ENSTTRP00000012499/1-929 LVKKRRKRRR KLQLDSLKRD DNTNTSEDED MFPIEMSSD- --ELQDSSRT bmy_07130T0/1-925 LVKKRRKRRR KSQLDSLKRD DNMNTSEDED MFPIEMSSDE EAELLDS--- BACU016767/1-930 LVKKRRKRRR KSQLDSLKRD DNMNTSEDED MFPIEMSSDE EAELLDSSRT 251 300 ENSP00000397908/1-975 LPNDIPPFQD DIPEENLSLA VIYPQSASYP NSDREWSPTP SSLVDCKRTA ENSBTAP00000040997/1-935 IPDDIPPFQE DVPKESRCPV MTYPQSASYP NSDREWSPSA SSLVDCRRPP ENSTTRP00000012499/1-929 LSNDIPPFQG DIPKENLSPV MTYLQSASYP NSDREWSPSA SSLTDCRGSP bmy_07130T0/1-925 ---------- ---------- ---------- ---------- SSLIDCRRRP BACU016767/1-930 LSNDIPPFQG DIPKENRSPV MTYPQSASYP NSDREWSPST SSLIDCRRRP 301 350 ENSP00000397908/1-975 PHLAVAAEGG LSSSCPPQSS LFHPSESPSG SRPSTPKSDS ELVSKSTERT ENSBTAP00000040997/1-935 PHLAVAAEGG LSSSCPPQSS HFHASESPSV SRPSTPKSDS ELVSKSADRT ENSTTRP00000012499/1-929 PRLAAAAEGG LSSSCPPQSS HFHASESPSV SRPSTPKSDS ELVSKSLDRT bmy_07130T0/1-925 PRLAVAAEGG LSSSCPPQSS HFHASESPSG SRPSTPKSDS ELVSKSVDRT BACU016767/1-930 PRLAVAAEGG LSSSCPPQSS HFHASESPSV SRPSTPKSDS ELVSKSADRT 351 400 ENSP00000397908/1-975 GQKNP-EMLW LWGELPQAAK SSSPHKMKES SPLSSRKICD KSHFQAIHSE ENSBTAP00000040997/1-935 IQKNNLEMLW LWGELPQATK SS-PHKMKES SPLNSRKICD KMHFQAIHSE ENSTTRP00000012499/1-929 MQKDNLEMLW LWGELPQAAK SS-AHKMKES SPLNSREVCD EMHFQAIHSE bmy_07130T0/1-925 MQKNNLEMLW LWGELPQAAK SS-AHKMKES GPLNSRKICD KTHFQAIPSD BACU016767/1-930 MQKNNLEMLW LWGELPQAAK SS-AHKMKES SPLNSRKICD KMHFQAIPSE 401 450 ENSP00000397908/1-975 SSDTFSDQSP TLVGGA---- LLDQNKPQTE MQFVNEEDLE TLGAAAPLLP ENSBTAP00000040997/1-935 SSDAFSDQSP TLVRASPVQP LLEQNKPQTE IQFVNEDDVE ALGAAAPPLP ENSTTRP00000012499/1-929 SSDAFSDQSP TLAGASPVQP LLEQNKPQTE VEFANEEDIE ALGAAAPPLP bmy_07130T0/1-925 SSDAFSEQSP TLAGGSPAQP PWEQSKPQTE MQFVNEEDVE ALGAAAPPLP BACU016767/1-930 SSDALSEPSP TLAGGSPVQP LLEQNKPQTE TQFVNEEDVE ALGAAAPPLP 451 500 ENSP00000397908/1-975 MIEELKPPSA SVVQ-TANKT DSPSRKRDKR SRHLGADGVY LD---DLTDM ENSBTAP00000040997/1-935 MIEEPKAHSA NTAPVAASKT DSPSRKKGEK ANASQCLPVH WGLCPPQSLP ENSTTRP00000012499/1-929 TIEESKAPSA SAAP-TASKT DSPSRKKDKR SRHLGADGVY LD---DLTDM bmy_07130T0/1-925 AIEESKALSA SAGP-AASKT DSPSRKKDKR SRHLGADGVY LD---DLTDM BACU016767/1-930 AIEEPKALSA SAAP-AASKT DSPSRKKDKR SRHLGADGVY LD---DLTDM 501 550 ENSP00000397908/1-975 DPEVAALYFP KNGDPSGLAK HASDNGARSA NQSPQSVGSS GVDSGVESTS ENSBTAP00000040997/1-935 HPKVQDSSEG RHGDPSGLTK PTSDNGARSA NQSPQSVGSS GVDSGVESTS ENSTTRP00000012499/1-929 DPEVAALYFP KNGDPSGLTK HASDNGARSA NQSPQSVGSS GADSGMESTS bmy_07130T0/1-925 DPEVAALYFP KNGDPPGLTK HASDNGTRSA NQSPQSVGSS GVDSGVESTS BACU016767/1-930 DPEVAALYFP KNGDPPGLTK HANDNGTRSA NQSPQSVGSS GVDSGVESTS 551 600 ENSP00000397908/1-975 DGLRDLPSIA ISLCGGLSDH REITKDAFLE QAVSYQQFVD NPAIIDDPNL ENSBTAP00000040997/1-935 DGLRDLPSIA ISLCGGLSDN REITKDAFLE QAVSYQQFAD NPALIDDPNL ENSTTRP00000012499/1-929 DSLRDLPSIA ISLCGGLSDN REITKDAFLE QAVSYQQFVD NPALIDDPNL bmy_07130T0/1-925 DSLRDLPSIA ISLCGGLSDN REITKDAFLE QAVSYQQFVD NPALIDDPNL BACU016767/1-930 DSLRDLPSIA ISLCGGLSDN REITKDAFLE QAVSYQQFVD NPALIDDPNL 601 650 ENSP00000397908/1-975 VVKIGSKYYN WTTAAPLLLA MQAFQKPLPK ATVESIMRDK MPKKGGRWWF ENSBTAP00000040997/1-935 VVKIGNKYYN WTTAAPLLLA MQAFQKPLPK ATVESIMRDK MPRKGGRWWF ENSTTRP00000012499/1-929 VVKIGNKYYN WTTAAPLLLA MQAFQKPLPK ATVESIMRDK MPRKGGRWWF bmy_07130T0/1-925 VVKIGNKYYN WTTAAPLLLA MQAFQKPLPK ATVESIMRDK MPRKGGRWWF BACU016767/1-930 VVKIGNKYYN WTTAAPLLLA MQAFQKPLPK ATVESIMRDK MPRKGGRWWF 651 700 ENSP00000397908/1-975 SWRGRNTTIK EESKPEQCLA GKAHSTGEQP PQLSLATRVK HESSSSDEER ENSBTAP00000040997/1-935 SWRGRNTTIK EESKPEQCLA GKSHSTGEQP SQLGMATRIK HESSSSDEEH ENSTTRP00000012499/1-929 SWRGRNSTIK EESKPEQCLA GKSHSTGEQP SQLGMATRIK HESSSSEEEH bmy_07130T0/1-925 SWRGRNSTIK EESKPEQCLA GKSHSTGEQP SQLGMATRIK HESSSSDEEH BACU016767/1-930 SWRGRNSTIK EESKPEQCLA GKSHSTGEQP SQLGMATRIK HESSSSDEEH 701 750 ENSP00000397908/1-975 AAAKPSNAGH LPLLPNVSYK KTLRLTSEQL KSLKLKNGPN DVVFSVTTQY ENSBTAP00000040997/1-935 AAAKPSSTSH LPLLSSVSYK KTLRLTSEQL KSLKLKNGPN DVVFSVTTQY ENSTTRP00000012499/1-929 ASAKLPSTNR PPLLSSVGYK KTLRLTSEQL KSLKLKNGPN DVVFSVTTQY bmy_07130T0/1-925 TAAKLSSSSH LPLLSSVSYK KTLRLTSEQL KSLKLKNGPN DVVFSVTTQY BACU016767/1-930 TAAELASSSH LPLLSSVSYK KTLRLTSEQL KSLKLKNGPN DVVFSVTTQY 751 800 ENSP00000397908/1-975 QGTCRCEGTI YLWNWDDKVI ISDIDGTITR SDTLGHILPT LGKDWTHQGI ENSBTAP00000040997/1-935 QGTCRCEGTI YLWNWDDKVV ISDIDGTITR SDTLGHILPT LGKDWTHQGI ENSTTRP00000012499/1-929 QGTCRCEGTI YLWNWDDKVI ISDIDGTITR SDTLGHILPT LGKDWTHQGI bmy_07130T0/1-925 QGTCRCEGTI YLWNWDDKVI ISDIDGTITR SDTLGHILPT LGKDWTHQGI BACU016767/1-930 QGTCRCEGTI YLWNWDDKVI ISDIDGTITR SDTLGHILPT LGKDWTHQGI 801 850 ENSP00000397908/1-975 AKLYHKVSQN GYKFLYCSAR AIGMADMTRG YLHWVNERGT VLPQGPLLLS ENSBTAP00000040997/1-935 AKLYHKVSQN GYKFLYCSAR AIGMADMTRG YLHWVNERGT VLPQGPLLLS ENSTTRP00000012499/1-929 AKLYHKVSQN GYKFLYCSAR AIGMADMTRG YLHWVNERGT VLPQGPLLLS bmy_07130T0/1-925 AKLYHKVSQN GYKFLYCSAR AIGMADMTRG YLHWVNERGT VLPQGPLLLS BACU016767/1-930 AKLYHKVSQN GYKFLYCSAR AIGMADMTRG YLHWVNERGT VLPQGPLLLS 851 900 ENSP00000397908/1-975 PSSLFSALHR EVIEKKPEKF KVQCLTDIKN LFFPNTEPFY AAFGNRPADV ENSBTAP00000040997/1-935 PSSLFSALHR EVIEKKPEKF KVQCLTDIKN LFFPNTEPFY AAFGNRPADV ENSTTRP00000012499/1-929 PSSLFSALHR EVIEKKPEKF KVQCLTDIKN LFSPNTEPFY AAFGNRPADV bmy_07130T0/1-925 PSSLFSALHR EVIEKKPEKF KVQCLTDIRN LFFPNTEPFY AAFGNRPADV BACU016767/1-930 PSSLFSALHR EVIEKKPEKF KVQCLTDIRN LFFPNTEPFY AAFGNRPADV 901 950 ENSP00000397908/1-975 YSYKQVGVSL NRIFTVNPKG ELVQEHAKTN ISSYVRLCEV VDHVFPLLKR ENSBTAP00000040997/1-935 YSYKQVGVSL NRIFTVNPKG ELVQEHAKTN ISSYVRLCEV VDHVFPLL-R ENSTTRP00000012499/1-929 YSYKQVGVSL NRIFTVNPKG ELVQEHAKTN VSSYVRLCEV VDHVFPLLKR bmy_07130T0/1-925 YSYKQVGVSL NRIFTVNPKG ELVQEHAKTN ISSYVRLCEV VDHVFPLLKR BACU016767/1-930 YSYKQVGVSL NRIFTVNPKG ELVQEHAKTN ISSYVRLCEV VDHVFPLLKR 951 1000 ENSP00000397908/1-975 SHSSDFPCSD TFSNFTFWRE PLPPFENQDI HSASA ENSBTAP00000040997/1-935 SHSSDFPCSD TFSNFTFWRE PPPPFENQDV HSASA ENSTTRP00000012499/1-929 SHSSDFPCSD TFSNFTFWRE PPPPFENQDV HSASA bmy_07130T0/1-925 SHSSDFPCSD TFSNFTFWRE PPPPFENQDV HSASA BACU016767/1-930 SHSSDFPCSD TFSNFTFWRE PPPPFENQDV HSASA