KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:18 2014 Check: 00 .. Name: ENSP00000388895/1-192 Len: 235 Check: 154 Weight: 1.00 Name: ENSTTRP00000015248/1-92 Len: 235 Check: 6649 Weight: 1.00 Name: ENSBTAP00000041004/1-230 Len: 235 Check: 5705 Weight: 1.00 Name: bmy_04899T0/1-191 Len: 235 Check: 3768 Weight: 1.00 Name: BACU010969/1-154 Len: 235 Check: 4679 Weight: 1.00 // 1 50 ENSP00000388895/1-192 MKKVKKKRSE ARRHRDSTSQ HASSNSTSQQ PSPESTPQQP SPESTPQQPS ENSTTRP00000015248/1-92 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041004/1-230 MKKGKRKKSE TRR-RGSTSR HASSESTPQQ QSSESSSQQP VSGSSPRPPS bmy_04899T0/1-191 MKKGKRQKSE ARR-RGSTSQ RASSESSPQQ QSSESSSQQP ISRSSPQPPS BACU010969/1-154 MKKGKRQKSE ARR-RGSTSQ RASSESSPQQ QSSESSSQQP ISRSSPQPPS 51 100 ENSP00000388895/1-192 PESTPQ---- ---------- ---------- ---------- -HSSLETTSR ENSTTRP00000015248/1-92 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041004/1-230 PKPTSQLPSS GSAPLTPNPA PAPPPPSPGP TPQQPSSGCT SQPSSNSTPS bmy_04899T0/1-191 PRPTLQ---- ---------- ----LSSPGP TPQPTSSGVT SQPSSESTAP BACU010969/1-154 PRPTLQ---- ---------- ----PSSRGP TPQPTSSGVT SQPSSESTAP 101 150 ENSP00000388895/1-192 QPAFQALPAP EIRRS--SCC LLSPDANVKA APQSRK-AGP LIRAGPHS-C ENSTTRP00000015248/1-92 ---------- ---------- ---------- ---------S VTRAGPRTCC ENSBTAP00000041004/1-230 QPARRALPAP EVSHSHSAQD VVSPDPNSKA SSRSRKAAGP LIRVGPRAFC bmy_04899T0/1-191 QPVPQALPAP ELSRS--ARG VVSPDTDTKA SPRSRKTAGP VTRAGPRAFC BACU010969/1-154 QPVPQALPAP ELRRS--ARG VVSPDTDTKA SPRSRKTED- ---------- 151 200 ENSP00000388895/1-192 SCATCPCSSA CWRRLGLCHS RIFDVLLPRD WQMAPGRGLP NLLTFYRKSS ENSTTRP00000015248/1-92 SCSACPGSSA CWHRLGLCHS RIFDVLLPRA WPTMPGRGFP NLLTFYRRPA ENSBTAP00000041004/1-230 SCSICPGSSA CWRRLGLCHS RIFDVLLPRA WPTMSGRGFP NLLTFYRRPS bmy_04899T0/1-191 SCSACPGSSA CWCRLGLCHS RIFDVLLPRA WPTMPGRGFP NFLTFYR--- BACU010969/1-154 ---------- ---------- --LQVNIP-- ---------- --LIVIR--- 201 250 ENSP00000388895/1-192 RKPSSHRNAC PPSPRNCGCG SGGSRSCLLH H---- ENSTTRP00000015248/1-92 SKHSTHRNLR APSPWDCCCG SGSPRSCLLH H---- ENSBTAP00000041004/1-230 RKHSTHRNSR APSPRNCCCG SGSPRSCLLH P---- bmy_04899T0/1-191 ---------- SWSTWGA--- --GPSGHALY ----- BACU010969/1-154 ---------- VLRALGTVAV ALGALGAAYY ITESL