KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:21 2014 Check: 00 .. Name: bmy_17823T0/1-361 Len: 723 Check: 2252 Weight: 1.00 Name: ENSP00000446917/1-670 Len: 723 Check: 1095 Weight: 1.00 Name: ENSBTAP00000041069/1-662 Len: 723 Check: 5883 Weight: 1.00 Name: BACU000905/1-643 Len: 723 Check: 9762 Weight: 1.00 Name: ENSTTRP00000016079/1-660 Len: 723 Check: 9155 Weight: 1.00 // 1 50 bmy_17823T0/1-361 ---------- ---------- ----MFAEPQ P--------- ---------- ENSP00000446917/1-670 MPAVDKLLLE EALQDSPQTR SLLSVFEEDA GTLTDYTNQL LQAMQRVYGA ENSBTAP00000041069/1-662 MPAVDKLLLE EALQDSPQTR SLLSVFEEDA GTLTDYTNQL LQAMQRVYGA BACU000905/1-643 MPAVDKLLEE EALQDSPQTR SLLSVFEEDA GTLTDYTNQL LQAMQRVYGA ENSTTRP00000016079/1-660 MPAVDKLLLE EALQDSPQTR SLLSVFEEDA GTLTDYTNQL LQAMQRVYGA 51 100 bmy_17823T0/1-361 ----CIIT-- ---------- ---------- ---------- ---------- ENSP00000446917/1-670 QNEMCLATQQ LSKQLLAYEK QNFALGKGDE EVISTLHYFS KVVDELNLLH ENSBTAP00000041069/1-662 QNEMCLATQQ LSKQLLAYEK QNFALGKGDE EVISTLHYFS KVVDELNVLH BACU000905/1-643 QNEMCLATQQ LSKQLLAYEE QNFALGKGDE EVISTLHCFS KVVDEVNVLH ENSTTRP00000016079/1-660 QNEMCLATQQ LSKQLLAYEK QNFALGKGDE EVISTLHYFS KVVDELNVLH 101 150 bmy_17823T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000446917/1-670 TELAKQLADT MVLPIIQFRE KDLTEVSTLK DLFGLASNDV CLFLEHDLSM ENSBTAP00000041069/1-662 TELAKQLADT MVLPIIQFRE KDLTEVSTLK DLFGLASS-- ----EHDLSM BACU000905/1-643 TELAKQLADT MVLPIIRFRE KDLTEVSTLK DLFGLASS-- ----EHDLSM ENSTTRP00000016079/1-660 TELAKQLADT MVLPIIQFRE KDLTEVSTLK DLFGLASN-- ----EHDLSM 151 200 bmy_17823T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000446917/1-670 AKYSRLPKKK ENEKVKTEVG KEVAAARRKQ HLSSLQYYCA LNALQYRKQM ENSBTAP00000041069/1-662 AKYSRLPKKK ENEKVKAEIV KEVAAARRKQ HLSSLQYYCA LNALQYRKRV BACU000905/1-643 AKYSRLPKKK ENEKVKTEIV KEVAAARRKQ HLSSLQYYCA LNALQYRKRV ENSTTRP00000016079/1-660 AKYSRLPKKK ENEKVKTEIV KEVAAARRKQ HLSSLQYYCA LNALQYRKRV 201 250 bmy_17823T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000446917/1-670 AMMEPMIGFA HGQINFFKKG AEMFSKRMDS FLSSVADMVQ SIQVELEAEA ENSBTAP00000041069/1-662 AMMEPMLGFA HGQINFFKKG AEMFSQSMDG FLSSVADMVQ SIQVELEVEA BACU000905/1-643 AMMEPMLGFA HGQINFFKKG AEMFSQSMDS FLSSVADMVQ SIQVELEAEA ENSTTRP00000016079/1-660 AMMEPMLGFA HGQINFFKKG AEMFSQSMDS FLASVADMVQ SIQVELEAEA 251 300 bmy_17823T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000446917/1-670 EKMRVSQQEL LSVDESVYTP DSDVAAPQIN RNLIQKAGYL NLRNKTGLVT ENSBTAP00000041069/1-662 EKMRASQQEL LSLDEAVYTP DFDVAAPQVN RNLIQKAGYL NLRNKTGLVS BACU000905/1-643 EEMRASQQEL LSLEEAVYTP DLDMAAPQIN RNLIQKAGYL NLRNKTGLVT ENSTTRP00000016079/1-660 EKMQASQQEL LSLEEAVYTP DFDVAAPQIN RNLIQKAGYL NLRNKTGLVT 301 350 bmy_17823T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000446917/1-670 TTWERLYFFT QGGNLMCQPR GAVAGGLIQD LDNCSVMAVD CEDRRYCFQI ENSBTAP00000041069/1-662 TTWERLYFFT QGGNLMCQPR GAVAGGLIQD LDNCSVMAVD CEDRRYCFQI BACU000905/1-643 TTWERLYFFT QGGNLMCQPR GAVAGGLIQD LDNCSVMAVD CEDRRYCFQI ENSTTRP00000016079/1-660 TTWERLYFFT QGGNLMCQPR GAVAGGLIQD LDNCSVMAVD CEDRRYCFQI 351 400 bmy_17823T0/1-361 ---------- ---------- -WICAINNIS RQIYLTDNPE AVAIKLNQTA ENSP00000446917/1-670 TTPNGKSGII LQAESRKENE EWICAINNIS RQIYLTDNPE AVAIKLNQTA ENSBTAP00000041069/1-662 TTPNGKAGII LQAESRKENE EWICAINNIS RQIYLTDNPE AVAIKLNQTA BACU000905/1-643 TTPNGRAGII LQAESRKENE ---------- ---------E AVAIKLNQTA ENSTTRP00000016079/1-660 TTPNGKAGII LQAESRKENE EWICAINNIS RQIYLTDNPE AVAIKLNQTA 401 450 bmy_17823T0/1-361 LQAVTPITSF AKKQESPCPS QNMKSSEV-- ENDKIVPKAA VVIPEAEQLI ENSP00000446917/1-670 LQAVTPITSF GKKQESSCPS QNLKNSEMEN ENDKIVPKAT ASLPEAEELI ENSBTAP00000041069/1-662 LQAVTPITSF AKKQESPCPS QNVKSSEM-- ENDKIVPKAT VTIPEAEQLI BACU000905/1-643 LQAVTPITSF AKKQESPCPS QNMKSSEV-- ENDKIVPKAA VIIPEAEQLI ENSTTRP00000016079/1-660 LQAVTPITSF AKKQESPCPS QNMKNSEV-- ENDKIVPKAA V-IPEAEQLI 451 500 bmy_17823T0/1-361 APGTPIQFDI VLPATEFLDQ NRGSRRINPF GETEDETFPE TEDSLLQQMF ENSP00000446917/1-670 APGTPIQFDI VLPATEFLDQ NRGSRRTNPF GETEDESFPE AEDSLLQQMF ENSBTAP00000041069/1-662 APGTPIQFDI VLPATEFLDQ NRGGRRTNPF GETEDATFPE AEDSLLQQMF BACU000905/1-643 APGTPIQFDI VLPATEFLDQ NRGSRRINPF GETEDETFPE TEDSLLQQMF ENSTTRP00000016079/1-660 APGTPIQFDI VLPATEFLDQ NRGSRRINPF GETEDETFPE TEDSLLQQMF 501 550 bmy_17823T0/1-361 IVRFLGSMAV KTDNTTEVIY EAMRQVLAAR AIHNIFRMTE SHLMVTSQAL ENSP00000446917/1-670 IVRFLGSMAV KTDSTTEVIY EAMRQVLAAR AIHNIFRMTE SHLMVTSQSL ENSBTAP00000041069/1-662 IVRFLGSMAV KTDNTTEVIY EAMRQVLAAR AIHNIFRMTE SHLMVTSQTL BACU000905/1-643 IVRFLGSMAV KTDNTTEVIY EAMRQVLAAR AIHNIFRMTE THLMVTSQAL ENSTTRP00000016079/1-660 IVRFLGSMAV KTDNTTEVIY EAMRQVLAAR AIHNIFRMTE SHLMVTSQAL 551 600 bmy_17823T0/1-361 RLSKDATHVS ALFFTFWFYK IHWLEEFELT SVTQFAAHQE NKRLVGFVVR ENSP00000446917/1-670 RLIDPQTQVS R--------- ----ANFELT SVTQFAAHQE NKRLVGFVIR ENSBTAP00000041069/1-662 RLIDPQTQVT R--------- ----ANFELT SVTQFAAHQE NKRLVGFVVR BACU000905/1-643 RLIDPQTQVT R--------- ----ANFELT SVTQFAAHQE NKRLVGFVVR ENSTTRP00000016079/1-660 RLIDPQTQVT R--------- ----ANFELT SVTQFAAHQE NKRLVGFVVR 601 650 bmy_17823T0/1-361 MPESTGGESL STYVFESNSE GEKVLSPLSS LDNNTSYMKN CIHYLELIKM ENSP00000446917/1-670 VPESTGEESL STYIFESNSE GEK------- ---------- ---------- ENSBTAP00000041069/1-662 LPESTGGESL STYVFESNSE GEK------- ---------- ---------- BACU000905/1-643 MPESTGGESL STYVFESNSE GEK------- ---------- ---------- ENSTTRP00000016079/1-660 MPESTGGESL STYVFESNSE GEK------- ---------- ---------- 651 700 bmy_17823T0/1-361 NQPFFQEVSV YHCICYAINL GKEIIEVQKD PEALAQLMLS IPLTNDGKYV ENSP00000446917/1-670 ---------- ---ICYAINL GKEIIEVQKD PEALAQLMLS IPLTNDGKYV ENSBTAP00000041069/1-662 ---------- ---ICYAINL GKEIIEVQKD PEALAQLMLS VPLTNDGKYV BACU000905/1-643 ---------- ---ICYAINL GKEIIEVQKD PEALAQLMLS IPLTNDGKYV ENSTTRP00000016079/1-660 ---------- ---ICYAINL GKEIIEVQKD PEALAQLMLS IPLTNDGKYV 701 750 bmy_17823T0/1-361 LLNDQPDDND GSPSENRGAE SEA ENSP00000446917/1-670 LLNDQPDDDD GNPNEHRGAE SEA ENSBTAP00000041069/1-662 LLNDQPDDND GSPSENRGAE SEA BACU000905/1-643 LLNDQPDDND GSPSENRGAE SEA ENSTTRP00000016079/1-660 LLN-QPDDND GSPSENRGAE SEA