KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:23 2014 Check: 00 .. Name: ENSP00000217026/1-700 Len: 1590 Check: 217 Weight: 1.00 Name: ENSBTAP00000041103/1-695 Len: 1590 Check: 2606 Weight: 1.00 Name: bmy_18456T0/1-629 Len: 1590 Check: 2754 Weight: 1.00 Name: BACU015484/1-1582 Len: 1590 Check: 7873 Weight: 1.00 Name: ENSTTRP00000012802/1-692 Len: 1590 Check: 57 Weight: 1.00 // 1 50 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 MDSSLAGTPS LQPPRANGNI NLGPSANPNA RPTDFDFLKV IGKGNYGKVL ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 LAKHKSDGMF YAVKVLQKKS ILKKKEQSHI MAERSVLLKN MCHPFLVGLH ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 YSFQTPEKLY FVLDYVNGGE LFFHLQRERR FLEPRARFYA AEVASAIGYL ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000217026/1-700 ---------- ----MSRRTR C--------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ----MSRRTR G--------- ---------- ---------- bmy_18456T0/1-629 ---------- ----MSDFGM S--------- ---------- ---------- BACU015484/1-1582 HSLNIIYRIQ GHVVLTDFGL CKEGVEPEET TSTFCGTPEY LAPEVLRKEP ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 YDRAVDWWSL GAVLYEMLHG LPPFYSQDVS QMYENILSQP LRIPGGLTVA ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 ACDLLQALLH KDQRQRLGSK TDFLEIKNHV FFSPINWDDL YHKRLTPPFN ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 PNVVTMEKEL RSTILFNAYK KEVFTTSNGY KSMQKRLRSN WKIQSLKDEI ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- -------LTE VTNGVGRVLF ---------- BACU015484/1-1582 TSEKLTGVKL WITAGPREKF TAAEFEVLKK YLDGGGDILV MLGEGGESRF ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 DTNINFLLEE YGIMVNNDAV VRNVYYKYFH PKEALVSNGV LNREISRAAG ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 KAVPGIIEEE SSGNNAQALT FVYPFGATLS VMKPAVAVLS TGSVCFPLNR ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 PILAFYHSKS QGGKLAVLGS CHMFSDQYLD KEENSKIMDV VFQWLTTGDI ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 HLNQIDAEDP EISDYMMLPD TATLSERLRV CLQEGDENPR DFTTLFDLSV ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 YQLDTTSLPK VIKAHEQLNV KHEPXXXXXX XXXXXXXXPL QLIQPQFETL ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 LPALQPAVFP PSFRELSPPP LELFDLDETF SSEKARLAQI TNKCTEEDLE ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 FYIRKCGDIL GVTNKLPKDQ QDAKHILEHI FFQVVEFKKL NQIPKSPSFE ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000217026/1-700 ---------- ---------- ---------- ------EDLD ELHYQDTDSD ENSBTAP00000041103/1-695 ---------- ---------- ---------- ------EELD ELHYQDTDSD bmy_18456T0/1-629 ---------- ---------- ---------- ------EELD ELHYQDTDSD BACU015484/1-1582 EPSVTPLVDT HSPCLYLHPD RSNFLFTHCL SYQLVSEELD ELHYQDTDSD ENSTTRP00000012802/1-692 ---------- ---------- ---------- ------EELD ELHYQDTDSD 801 850 ENSP00000217026/1-700 VPEQRDSKCK VKWTHEE--- ---------- ---------- --------DE ENSBTAP00000041103/1-695 VPEQRDSKCK VKWTQEE--- ---------- ---------- --------DE bmy_18456T0/1-629 VPEQRDSKCK VKWTHEE--- ---------- ---------- --------DE BACU015484/1-1582 VPEQRDSKCK VKWTHEEESL INICFPLDFE SHELGQLQCC PLPCLVCLDE ENSTTRP00000012802/1-692 VPEQRDSKCK VKWTHEE--- ---------- ---------- --------DE 851 900 ENSP00000217026/1-700 QLRALVRQFG QQDWKFLASH FPNRTDQQCQ YRWLRVLNPD LVKGPWTKEE ENSBTAP00000041103/1-695 QLRALVKQFG QQDWKFLASH FPNRTDQQCQ YRWLRVLNPD LVKGPWTKEE bmy_18456T0/1-629 QLRALVRQFG QQDWKFLASH FPNRTDQQCQ YRWLRVLNPD LVKGPWTKEE BACU015484/1-1582 QLRALVRQFG QQDWKFLASH FPNRTDQQCQ YRWLRVLNPD LVKGPWTKEE ENSTTRP00000012802/1-692 QLRALVRQFG QQDWKFLASH FPNRTDQQCQ YRWLRVLNPD LVKGPWTKEE 901 950 ENSP00000217026/1-700 DQKVIELVKK YGTKQWTLIA KHLKGRLGKQ CRERWHNHLN PEVKKSCWTE ENSBTAP00000041103/1-695 DQKVIELVKK YGTKQWTLIA KHLKGRLGKQ CRERWHNHLN PEVKKSCWTE bmy_18456T0/1-629 DQKVIELVKK YGTKQWTLIA KHLKGRLGKQ CRERWHNHLN PEVKKSCWTE BACU015484/1-1582 DQKVIELVKK YGTKQWTLIA KHLKGRLGKQ CRERWHNHLN PEVKKSCWTE ENSTTRP00000012802/1-692 DQKVIELVKK YGTKQWTLIA KHLKGRLGKQ CRERWHNHLN PEVKKSCWTE 951 1000 ENSP00000217026/1-700 EEDRIICEAH KVLGNRWAEI AKMLPGRTDN AVKNHWNSTI KRKVDTGGFL ENSBTAP00000041103/1-695 EEDRIICEAH KVLGNRWAEI AKMLPGRTDN AVKNHWNSTI KRKVDTGGFL bmy_18456T0/1-629 EEDRIICEAH KVLGNRWAEI AKMLPG---- ---------- -RKVDTGGFL BACU015484/1-1582 EEDRIICEAH KVLGNRWAEI AKMLPGRTDN AVKNHWNSTI KRKVDTGGFL ENSTTRP00000012802/1-692 EEDRIICEAH KVLGNRWAEI AKMLPGRTDN AVKNHWNSTI KRKVDTGGFL 1001 1050 ENSP00000217026/1-700 SESKDCKPPV YLLLELEDKD GLQSAQPTEG QGSLLTNWPS VPPTIKEEEN ENSBTAP00000041103/1-695 SESRDSKPSM YLLLELEDKD GRQSAPSSEG QGSVVTSWPP AFPALKEEES bmy_18456T0/1-629 SESRDSKPPM YLLLELEDKD GHQSAPASEG Q--------- ------EEES BACU015484/1-1582 SESRDSKPPM YLLLELEDKD GHQSAPASEG QGGLVTSWPP AFPALKEEES ENSTTRP00000012802/1-692 SESRDSKPPM YLLLELEDKD GCQSAPASEG QGSLVTGWPP AFPALKEEES 1051 1100 ENSP00000217026/1-700 SEEELAAATT SKEQEPIGTD LDAVRTPEPL EEFPKREDQE GSPPETSLPY ENSBTAP00000041103/1-695 SEEEVTAAAP AQEQEPVPAE PDGVRTPEPL EDFPKREDQE GSSPETSLPY bmy_18456T0/1-629 SEEEATGAAP SQEQEPVPAE LDGVRTPEPL EDFPKREDQE GSSPETSLPY BACU015484/1-1582 SEEEATGAAP SQEQEPVPAE LDGVRTPEPL EDFPKREDQE GSSPETSLPY ENSTTRP00000012802/1-692 SEEEATAAAP SQEQEPVPTE LDGVQTPEPL EDFPKREDQE GSSPETSLPY 1101 1150 ENSP00000217026/1-700 KWVVEAANLL IPAVGSSLSE ALDLIESDPD AWCDLSKFDL PEEPSAEDSI ENSBTAP00000041103/1-695 KWVVEAANLL IPAVESGLSE ALDLIESDPD AWCDLSKFDL PEEPSAEGSL bmy_18456T0/1-629 KWVVEAANLL IPAVGSSLSE ALDLIESDPD AWCDLSKFDL PEEPSAEGSI BACU015484/1-1582 KWVVEAANLL IPAVGSSLSE ALDLIESDPD AWCDLSKFDL PEEPSAEGSV ENSTTRP00000012802/1-692 KWVVEAANLL IPAVGSSLSE ALDLIESDPD AWCDLSKFDL PEEPSAEGSI 1151 1200 ENSP00000217026/1-700 NNSLVQLQAS ----HQQQVL PPRQPSALVP SVTEYRLDGH TISDLSRSSR ENSBTAP00000041103/1-695 VGSPGQPQAW -----QQQPA PPRPAAAAAP SVTEYRLDGH TISDLSRSSR bmy_18456T0/1-629 GGSPVQPHPS --QQQQQQAP PTRQPAAAVP SVTEYRLDGH TISDLSRSSR BACU015484/1-1582 GGSPVQPHPS QQQQQQQQAP PTRQPAAAVP SVTEYRLDGH TISDLSRSSR ENSTTRP00000012802/1-692 GGSPVQPHPS --QQQQQQAP PPRQPAAAVP SVTEYRLDGH TISDLSRSSR 1201 1250 ENSP00000217026/1-700 GELIPISPST EVGGSGIGTP PSVLKRQRKR RVALSPVTEN STSLSFLDSC ENSBTAP00000041103/1-695 GELIPISPST DVGGSGMGTP PSVLKRQRKR RVALSPVTEN SASLSFLDSC bmy_18456T0/1-629 GELIPISPST DVGGSGISTP PSVLKRQKKR RVALSPVTEN SASLSFLDSC BACU015484/1-1582 GELIPISPST DVGGSGISTP PSVLKRQKKR RVALSPVTEN SASLSFLDSC ENSTTRP00000012802/1-692 GELIPISPST DVGGSGISTP PSVLKRQKKR RVALSPVTEN SASLSFLDSC 1251 1300 ENSP00000217026/1-700 NSLTPKSTPV KTLPFSPSQF LNFWNKQDTL ELESPSLTST PVCSQKVVVT ENSBTAP00000041103/1-695 NSLTPKSTPV KTLPFSPSQF LNFWNKQDTL ELESPSLTST PVCSQKVVVT bmy_18456T0/1-629 NSLTPKSTP- ---------F LNFWNKQDTL ELESPSLTST PVCSQKVVVT BACU015484/1-1582 NSLTPKSTPV KTLPFSPSQF LNFWNKQDTL ELESPSLTST PVCSQKVVVT ENSTTRP00000012802/1-692 NSLTPKSTPV KTLPFSPSQF LNFWNKQDAL ELEGPSLTST PVCSQKVVVT 1301 1350 ENSP00000217026/1-700 TPLHRDKTPL HQKHAAFVTP DQKY-----S MDNTPHTPTP FKNALEKYGP ENSBTAP00000041103/1-695 TPLHRDKTPL HQKHAAFVTP DQKY-----S MDNTPHTPTP FKNALEKYGP bmy_18456T0/1-629 TPLHRDKTPL HQKHAA---P EVRWRAVWES RAACSRAAGV CLQPRREASS BACU015484/1-1582 TPLHRDKTPL HQKHAAFVTP DQKY-----S RDSTPHTPTP FKNALEKYGP ENSTTRP00000012802/1-692 TPLHRDKTPL HQKHAAFVTP DQKY-----S RDSTPHTPTP FKNALEKYGP 1351 1400 ENSP00000217026/1-700 LKP--LPQTP HLEEDLKEVL RSEAGIELII EDDIRPEKQK RKPG------ ENSBTAP00000041103/1-695 LKP--LPQTP HLEEDLKEVL RSEAGIELII EDEVRPEKQK RKAG------ bmy_18456T0/1-629 SVPGRFPQTP HLEEDLKEVL RSEAGIELII EDEVRPEKQK RKAG------ BACU015484/1-1582 LKP--LPQTP HLEEDLKEVL RSEAGIELII EDEVRPEKQK RKAGVLSWGA ENSTTRP00000012802/1-692 LKP--LPQTP HLEEDLKEVL RSEAGIELII EDEVRPEKQK RKAG------ 1401 1450 ENSP00000217026/1-700 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041103/1-695 ---------- ---------- ---------- ---------- ---------- bmy_18456T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU015484/1-1582 GKMGVCRGGG WVRRKSSPAG HAQGLPCTRA WFCDQGSWGR RHQALVVTRG ENSTTRP00000012802/1-692 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000217026/1-700 ---------- ---LRRSPIK KVRKSLALDI VDEDVKLMMS TLPKSLSLPT ENSBTAP00000041103/1-695 ---------- ---MRRSPIK KVRKSLALDI VDEDVKLMMS TLPKPTSI-- bmy_18456T0/1-629 ---------- ---LRRSPIK KVRKSLALDI VDEDMKLMMS ALPKALPL-- BACU015484/1-1582 NPNACPKHLL LPQLRRSPIK KVRKSLALDI VDEDMKLMMS ALPKALPLPT ENSTTRP00000012802/1-692 ---------- ---LRRSPIK KVRKSLALDI VDEDVKLMMS TLPKALPLPT 1501 1550 ENSP00000217026/1-700 TAPSNSSSLT LSGIKEDNSL LNQGFLQAKP EKAAVAQKPR SHFTTPAPMS ENSBTAP00000041103/1-695 -LAAGSSGLT PSGSREDSSL LNEGFLQAKP EKPA-APKPR GHFATPAPMT bmy_18456T0/1-629 ---------- ---------- ---------- ---------- --------MT BACU015484/1-1582 NIPPGSSGLT PSGSREDSSL LNEGFLQAKP EKPA-AQKPR GHFPTPAPMT ENSTTRP00000012802/1-692 NIPPGSSGLT PSGSREDSSL LNEGFLQAKP EKPA-AQKPR GHFLTPAPMT 1551 1600 ENSP00000217026/1-700 SAWKTVACGG TRDQLFMQEK ARQLLGRLKP SHTSRTLILS ENSBTAP00000041103/1-695 SAWKTVACGG TRDQLFMQEK ARQLLGRLKP SHTSRTLILS bmy_18456T0/1-629 SAWKMVACGG TRDQLFMQEK ARQLLGRLKP SHTSRTLILS BACU015484/1-1582 SAWKMVACGG TRDQLFMQEK ARQLLGRLKP SHTSRTLILS ENSTTRP00000012802/1-692 SAWKVVACGG TRDQLFMQEK ARQL--GLKP SHTSRTLILS