KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:24 2014 Check: 00 .. Name: ENSBTAP00000041120/1-581 Len: 613 Check: 5468 Weight: 1.00 Name: ENSP00000345359/1-605 Len: 613 Check: 4016 Weight: 1.00 Name: ENSTTRP00000016216/1-520 Len: 613 Check: 8837 Weight: 1.00 Name: bmy_17086T0/1-459 Len: 613 Check: 478 Weight: 1.00 Name: BACU007931/1-582 Len: 613 Check: 3990 Weight: 1.00 // 1 50 ENSBTAP00000041120/1-581 --------MG RLLRAAGSP- -LPSLLLLLA GGASLGVRAA GSEEPGSEGL ENSP00000345359/1-605 --------MG RLLRAARLPP LLSPLLLLLV GGAFLGACVA GSDEPGPEGL ENSTTRP00000016216/1-520 ---------- ---------- ---------- --TSLVTCAA GSEEPGPEGL bmy_17086T0/1-459 ---------- ---------- ---------- ---------- ---------- BACU007931/1-582 MCREAMVVVG AQLRPGG--- ---PGRLLRA EGASLVTCAA GSEEPGPEGL 51 100 ENSBTAP00000041120/1-581 PSTSLLDLLL PTGLEPLDSE EPSEAVGLGA GLGAPGSGFP SEESEESRIL ENSP00000345359/1-605 TSTSLLDLLL PTGLEPLDSE EPSETMGLGA GLGAPGSGFP SEENEESRIL ENSTTRP00000016216/1-520 TSTSLLDLLL PTGLEPLDSE EPSEAMGLGT GLGAPGSGFA SEESEESRIL bmy_17086T0/1-459 ---------- ---------- ---------- ---------- ---------- BACU007931/1-582 TSTSLLDLLL PTGLEPLDSE EPSEAMGLGA GLGAPGSGFA SEESEESRIL 101 150 ENSBTAP00000041120/1-581 QPPQYFWEEE DALNESSLGL GPTADYAFPD LTEKADPTDN TGQSQETPSL ENSP00000345359/1-605 QPPQYFWEEE EELNDSSLDL GPTADYVFPD LTEKAGSIED TSQAQELPNL ENSTTRP00000016216/1-520 QPPQYFWEEE EVLNDSSLDL GPTADYGFPD LTEKAGPVED TGQSQEGASL bmy_17086T0/1-459 ---------- ---------- -----YGFPD LTEKAGPIED TGQSQEGASL BACU007931/1-582 QPPQYFWEEE EVLNDSSLDL GPTADYGFPD LTEKAGPIED TGQSREGASL 151 200 ENSBTAP00000041120/1-581 ASPLPGVDLV GPPWHMAP-- ---------- ---------- GEEEEQLLPV ENSP00000345359/1-605 PSPLPKMNLV EPPWHMPPRE EEEEEEEEEE REKEEVEKQE EEEEEELLPV ENSTTRP00000016216/1-520 PSPLPKMSLV EPPWRVVP-- ---------- --------AE EEEAEQLLPV bmy_17086T0/1-459 PSPLPKMSLV EPPWHVVP-- ---------- --------GE EEEEEQLLPV BACU007931/1-582 PSPLPKMSLV EPPWHVVP-- ---------- --------GE EEEEEQLLPV 201 250 ENSBTAP00000041120/1-581 TGPQEGARRQ ALGFLPVGSS RALEPPEHRP EESGDQAASG GEAGSSMEPS ENSP00000345359/1-605 NGSQEEAKPQ VRDFSLTSSS QTPGATKSRH EDSGDQASSG VEVESSMGPS ENSTTRP00000016216/1-520 TRSQEEPRSQ VHGFPPTGSS QTPGAPEHRH EESGDQASSG VEVGSSMEPS bmy_17086T0/1-459 TRSQEESQSQ VHGFPPTGSS QTPGAPEHRH EESGDQASSG VEVGSNMEPS BACU007931/1-582 TRSQEEPQSQ VHGFPPTGSS QTPGAPEHRH EESGDQASSG VEVGSSVEPS 251 300 ENSBTAP00000041120/1-581 LSLPGVSLSP VTLRGQDMAG RGPGPTVLPA AGRSSVSEAP PEPSVEAAAA ENSP00000345359/1-605 LLLPSVTPTT VTPGDQDSTS QEAEATVLPA AGLGVEFEAP QEASEEATAG ENSTTRP00000016216/1-520 LSPPTVAPSP VTLGGQDVAD WGAGGTALPA AGHGLELEAP REPSEEATAE bmy_17086T0/1-459 LSPPTVTPSP VTPGGQDVAD WGPGGTALPA AGHGLELEAP REPSEEATAG BACU007931/1-582 LSPPTVTPSP VALGGQDVAD WGAGGTGLPA AGHGLELEAP REPSEEATAG 301 350 ENSBTAP00000041120/1-581 AAGLAGWPGA GPSPASFPQT VAPGGAEGPG RDALQPGGSA SLPLAPGGTE ENSP00000345359/1-605 AAGLSGQHEE VPALPSFPQT TAPSGAEHPD EDPLGSRTSA SSPLAPGDME ENSTTRP00000016216/1-520 TAGLAGRPGE GPSPASFSQT EAPGGAEASD EDPTHPGASA SFSLAPGDTE bmy_17086T0/1-459 TAGLAGRPGE GPSPASFPQT EAPSGAEASD EDPTHPGASA SFSLAPGDME BACU007931/1-582 TAGLAGRPGE GPSPASFPQT EAPSGAEASD EDPTHPGASA SFSLAPGDTE 351 400 ENSBTAP00000041120/1-581 LTPSSVTLGR DDLRQEPQEG PARAAPSRRP WDSTQVICKD WSNLAGKNYV ENSP00000345359/1-605 LTPSSATLGQ EDLNQQLLEG QAAEAQSRIP WDSTQVICKD WSNLAGKNYI ENSTTRP00000016216/1-520 LTPSSAAVGR ETLSQLPQEG QTADTPSRTP WDSTLVICKD WSNLAGKNYI bmy_17086T0/1-459 LTPSSAAVGR ETLSQLPQEG QTADAPSRTP WXSTQVICKD WSNLAGKNYI BACU007931/1-582 LTPSSAAVGR ETLSQLPQEG QTADAPSRTP WNSTQVICKD WSNLAGKNYI 401 450 ENSBTAP00000041120/1-581 ILNMTENVEC EVFRRHRGLQ LLALVEGVLP RHGRGRHGAW HISLSKPSEK ENSP00000345359/1-605 ILNMTENIDC EVFRQHRGPQ LLALVEEVLP RHGSGHHGAW HISLSKPSEK ENSTTRP00000016216/1-520 ILNMAENVDC EVFRRHRGLQ LLALVEEALP RHGRSRHGDW HISLSKPSEK bmy_17086T0/1-459 ILTMAENVDC EVFRRHRGLQ LLALVEGVLP RHGSGRHGDW HISLSKPSEK BACU007931/1-582 ILTMAENVDC EVFRRHRGLQ LLALVEGVLP RH-----GDW HISLSKPSEK 451 500 ENSBTAP00000041120/1-581 EQHLLMALVG EQGSLPTGAV SRWELSLRSL VGQIGIQNYS TTSSCQARAS ENSP00000345359/1-605 EQHLLMTLVG EQGVVPTQDV LSMLGDIRRS LEEIGIQNYS TTSSCQARAS ENSTTRP00000016216/1-520 ERHLLMTLVG EQGVVPTQDV LSMLGDIRRS LVEIGIQNYS TTGSCQARAS bmy_17086T0/1-459 EQRLLMALVG EQGVVPTQDV LSMLGDIRRS LLEIGIQNYS TTSSCQARAS BACU007931/1-582 EQRLLMALVG EQGVVPTQDV LSMLGDVRRS LLEIGIQNYS TTSSCQARAS 501 550 ENSBTAP00000041120/1-581 QVRSDYGTLF VVLVVIGALC VVIIVLGLLY NCWQRRLPKL KHVSHGEELR ENSP00000345359/1-605 QVRSDYGTLF VVLVVIGAIC IIIIALGLLY NCWQRRLPKL KHVSHGEELR ENSTTRP00000016216/1-520 QVRSDYGTLF VVLVAIGAIC VVIIVLGLLY NCWQRRLPKL KHVSHGEELR bmy_17086T0/1-459 QVRSDYGTLF VVLVVIGAIC VVIIVLGLLY NCWQRRLPKL KHVSHGEELR BACU007931/1-582 QVRSDYGTLF VVLVVIGAIC VIIIVLGLLY NCWQRRLPKL KHVSHGEELR 551 600 ENSBTAP00000041120/1-581 FVENGCHDNP TLDVASDSQS EMQEKQPSLN GGGAVNGPGG WSALMGGKRD ENSP00000345359/1-605 FVENGCHDNP TLDVASDSQS EMQEKHPSLN GGGALNGPGS WGALMGGKRD ENSTTRP00000016216/1-520 FVENGCHDNP TLDVASDSQS EM-------- ---------- ---------- bmy_17086T0/1-459 FVENGCHDNP TLDVASDSQS EMQEKQPSLN GGGAVNGPGG WSALMGGKRD BACU007931/1-582 FVENGCHDNP TLDVASDSQS EMQEKQPSLN GGGAVNGPGG WSALMGGKRD 601 650 ENSBTAP00000041120/1-581 PEDSDVFEED THL ENSP00000345359/1-605 PEDSDVFEED THL ENSTTRP00000016216/1-520 ---------- --- bmy_17086T0/1-459 PEDS------ --- BACU007931/1-582 PEDSDVFEED THL