KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:24 2014 Check: 00 .. Name: bmy_17083T0/1-236 Len: 440 Check: 8827 Weight: 1.00 Name: ENSTTRP00000016212/1-361 Len: 440 Check: 7374 Weight: 1.00 Name: ENSBTAP00000041130/1-337 Len: 440 Check: 4190 Weight: 1.00 Name: ENSP00000347748/1-373 Len: 440 Check: 6877 Weight: 1.00 Name: BACU007934/1-350 Len: 440 Check: 4648 Weight: 1.00 // 1 50 bmy_17083T0/1-236 MKAPRGQVCP GTWTRRVIAG AWPCQHRWRG AEHGNREETS FFPWTYCVRH ENSTTRP00000016212/1-361 MDTPEEE--- -IWA----SG A--------- ---------- ---------- ENSBTAP00000041130/1-337 AGRMD----- -TWD----MG A--------- ---------- ---------- ENSP00000347748/1-373 MDTLEEV--- -TWA----NG S--------- ---------- ---------T BACU007934/1-350 MDTPEEE--- -IWA----SG S--------- ---------- ---------- 51 100 bmy_17083T0/1-236 TFSPVIPPVL GVSSGCQWGR HPRASGWPAR VRYWDLLLLV PNVLFFIFLL ENSTTRP00000016212/1-361 ---PPPAPNI SVPHRCLLLL YEDIG--TSX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041130/1-337 SSPPPLAPNI SVPHRCLLLL YEDIG--TSR VRYWDLLLLI PNVLFFIFLL ENSP00000347748/1-373 ALPPPLAPNI SVPHRCLLLL YEDIG--TSR VRYWDLLLLI PNVLFLIFLL BACU007934/1-350 ---PPPAPNI SVPHRCLLLL YEDIG--TSR VRYWDLLLLV PNVLFFIFLL 101 150 bmy_17083T0/1-236 WKLPFARAKI RVTSSPIFIT FYILVFVVAL VGIARAVVSM TVSTSDAATV ENSTTRP00000016212/1-361 XXXXXXXXXX XXXXXXXXXX XXXXVFVVAL VGIARAVVSM TVSASDAATV ENSBTAP00000041130/1-337 WKLPFARAKI RVTSSPIFIT FYILVFVVAL VGIARAVVSM TVSTSDAATV ENSP00000347748/1-373 WKLPSARAKI RITSSPIFIT FYILVFVVAL VGIARAVVSM TVSTSNAATV BACU007934/1-350 WKLPFARAKI RVTSSPIFIT FYILVFVVAL VGIARAVVSM TVSTSDAATV 151 200 bmy_17083T0/1-236 ADKVGLGLLA GLLGTGRGHP APRLTLCPLC VQILWEITRF FLLAIELSVV ENSTTRP00000016212/1-361 ADK------- ---------- ---------- --ILWEITRF FLLAIELSVV ENSBTAP00000041130/1-337 ADK------- ---------- ---------- --ILWEITRF FLLAIELSVV ENSP00000347748/1-373 ADK------- ---------- ---------- --ILWEITRF FLLAIELSVI BACU007934/1-350 ADK------- ---------- ---------- --ILWEMTRF FLLAIELSVV 201 250 bmy_17083T0/1-236 ILGLAFGASA AAA------- ---------- ---------- ---------- ENSTTRP00000016212/1-361 ILGLAFGHLE SKSSIKRVLA ITTVLALAYS VTQGTLEILY PDAHLSAEDF ENSBTAP00000041130/1-337 ILGLAFGHLE SKSSIKRVLA ITTVLSLAYS VTQGTLEILY PDAHLSAEDF ENSP00000347748/1-373 ILGLAFGHLE SKSSIKRVLA ITTVLSLAYS VTQGTLEILY PDAHLSAEDF BACU007934/1-350 ILGLAFGHLE SKSSIKRVLA ITTVLALAYS VTQGTLEILY PDAHLSAEDF 251 300 bmy_17083T0/1-236 ---------- ---------- ---------R APL----PLP ---------- ENSTTRP00000016212/1-361 NIYGHGGRQF WLVSSCFFFL VYSLVVVLPK TPLKERISLP SRRSFYVYAG ENSBTAP00000041130/1-337 NIYGHGGRQF WLVSSCFFFL VYSLVVVLPR TPLKERISLP SRRSFYVYAG ENSP00000347748/1-373 NIYGHGGRQF WLVSSCFFFL VYSLVVILPK TPLKERISLP SRRSFYVYAG BACU007934/1-350 NIYGHGGRQF WLVSSCFFFL VYSLVVVLPK TPLKERISLP SRRSFYVYAG 301 350 bmy_17083T0/1-236 ---------G WG-------- ---------- ---------- ---------- ENSTTRP00000016212/1-361 ILALLNLLQG LGSALLCADV IEGLCCVDAT TFLYFSFFAP LIYVAFLRGF ENSBTAP00000041130/1-337 ILALLNLVQG LG-------- ---------- ------FFAP LIYVAFLRGF ENSP00000347748/1-373 ILALLNLLQG LGSVLLCFDI IEGLCCVDAT TFLYFSFFAP LIYVAFLRGF BACU007934/1-350 ILALLNLLQG LGSALLCADV IEGLC----- ------FFAP LIYVAFLRGF 351 400 bmy_17083T0/1-236 ---------- ---------- -----PTP-- ---------- ---------- ENSTTRP00000016212/1-361 FGSEPKILFS YKCQVDETEE PDVHLPQPYA VARREGLEAA VAA------- ENSBTAP00000041130/1-337 FGSEPKILFS YKCQVDETEE PDMHLPQPYA VARREGPEAA GAA------- ENSP00000347748/1-373 FGSEPKILFS YKCQVDETEE PDVHLPQPYA VARREGLEAA GAAGASAASY BACU007934/1-350 FGSEPKILFS YKCQVDETEE PDVHLPQPYA VARREGLEAA VAA------- 401 450 bmy_17083T0/1-236 ---------- -PWFPRLAPA D--------- ---------- ENSTTRP00000016212/1-361 -STQFDAAGG VAYLDDVASM PCHTGSVNST DSERWKAINT ENSBTAP00000041130/1-337 -STQFDSA-G VAYLDDVASL PCHSGSINSL DSERWRAINA ENSP00000347748/1-373 SSTQFDSAGG VAYLDDIASM PCHTGSINST DSERWKAINA BACU007934/1-350 -STQFDSAGG MAYLDDVASM PCHTGSINST DSERWKAINA