KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:24 2014 Check: 00 .. Name: ENSTTRP00000009146/1-531 Len: 679 Check: 7403 Weight: 1.00 Name: ENSP00000326604/1-490 Len: 679 Check: 34 Weight: 1.00 Name: ENSBTAP00000041131/1-489 Len: 679 Check: 3519 Weight: 1.00 Name: bmy_12872T0/1-370 Len: 679 Check: 9786 Weight: 1.00 Name: BACU000745/1-473 Len: 679 Check: 3389 Weight: 1.00 // 1 50 ENSTTRP00000009146/1-531 MEGQDEVSXX XXXXXXXXXX XXICFLLFAV LYIVSYFIIT RYKRKSDEQE ENSP00000326604/1-490 MEGQDEVSAR EQHFHSQVRE STICFLLFAI LYVVSYFIIT RYKRKSDEQE ENSBTAP00000041131/1-489 MEGQDEVSAR EQHFHSQVRE STICFLIFAI LYIVSYFIIT RYKRKSDEQE bmy_12872T0/1-370 MGKSDKMALE GGLKQFQV-- ---------- ---------- ---------- BACU000745/1-473 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009146/1-531 DEDAIVNRIS LFLSTFTLAV SAGAVLLLPF SIISNEILLS FPQNYYIQWL ENSP00000326604/1-490 DEDAIVNRIS LFLSTFTLAV SAGAVLLLPF SIISNEILLS FPQNYYIQWL ENSBTAP00000041131/1-489 DEDAIVNRIS LFLSTFTLAV SAGAVLLLPF SIISNEILLS FPQNYYIQWL bmy_12872T0/1-370 ---------- ---------- ---------- ---------- ---------- BACU000745/1-473 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009146/1-531 NGSLIHGLWN LASLFSNLCL FVLMPFAFFF LESE----GF AGLKR----G ENSP00000326604/1-490 NGSLIHGLWN LASLFSNLCL FVLMPFAFFF LESE----GF AGLKK----G ENSBTAP00000041131/1-489 NGSLIHGLWN LASLFSNLCL FVLMPFAFFF LESE----GF AGLKK----G bmy_12872T0/1-370 ---------- -ALLFSSYII TLKTPVTCF- -ESSDVPMGW SEARRIRAPG BACU000745/1-473 ---------- ---------- ---MPFAFFF LESE----GF AGLKK----G 151 200 ENSTTRP00000009146/1-531 IRARILETLV MLILLALLIL GIVWVALALI DNDAASMESL YDLWDFYLPY ENSP00000326604/1-490 IRARILETLV MLLLLALLIL GIVWVASALI DNDAASMESL YDLWEFYLPY ENSBTAP00000041131/1-489 IRARILETLV MLILLALLIL GIVWVASALI DNDAASMESL YDLWEFYLPY bmy_12872T0/1-370 IRARILETLV MLILLALLIL GIVWVASALI DNDAA----- ---------- BACU000745/1-473 IRARILETLV MLILLALLIL GIVWVASALI DNDAASMESL YDLWEFYLPY 201 250 ENSTTRP00000009146/1-531 LYSCISLMGC LLLLLCTPVG LSRMFTVMGQ LLVKPT---- -------ILE ENSP00000326604/1-490 LYSCISLMGC LLLLLCTPVG LSRMFTVMGQ LLVKPT---- -------ILE ENSBTAP00000041131/1-489 LYSCISLMGC LLLLLCTPVG LSRMFTVMGQ LLVKPT---- -------ILE bmy_12872T0/1-370 ---------- ----MCTPVG LSRMFTVMGQ LLVKPTVNVD EKPVLDWILE BACU000745/1-473 LYSCISLMGC LLLLLCTPVG LSRMFTVMGQ LLVKPT---- -------ILE 251 300 ENSTTRP00000009146/1-531 DLDEQIYIIT LEEEAIQRRL N--------- ---------- ---XXXXXXX ENSP00000326604/1-490 DLDEQIYIIT LEEEALQRRL N--------- ---------- ---------- ENSBTAP00000041131/1-489 DLDEQIYIIT LEEEALQRRL S--------- ---------- ---------- bmy_12872T0/1-370 DLDEQIYIIT LEEEALQRRL NDVKKEEVKF GDSIKDNHME EYLGKPIVET BACU000745/1-473 DLDEQIYIIT LEEEALQRRL N--------- ---------- ---------- 301 350 ENSTTRP00000009146/1-531 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLSSSV EHNITELEQE ENSP00000326604/1-490 ---------- ---------- ---------- ----GLSSSV EYNIMELEQE ENSBTAP00000041131/1-489 ---------- ---------- ---------- ----GLPSSV EYNVTELEQE bmy_12872T0/1-370 SGDKPRLRGW RTSTEDVLVS FLLSVMLQYL CILKGLSSSV EYNITELEQE BACU000745/1-473 ---------- ---------- ---------- ----GLSSSV EHNITELEQE 351 400 ENSTTRP00000009146/1-531 LDNVKTLKTK LERRKKASAW ERNLVYPAVM VLLLIETSIS VLLVACNILC ENSP00000326604/1-490 LENVKTLKTK LERRKKASAW ERNLVYPAVM VLLLIETSIS VLLVACNILC ENSBTAP00000041131/1-489 LENVKILKKK LERRKKASAW ERNLVYPAVM VLLLIETSIS VLLVACNILC bmy_12872T0/1-370 LDNVKTLKTK LERRKKASAW ERNLVYPAVM VLLLIETSIS VLLVACNILC BACU000745/1-473 LDNVKTLKTK LERRKKASAW ERNLVYPAVM VLLLIETSIS VLLVACNILC 401 450 ENSTTRP00000009146/1-531 LLVDETAMPK GTRGPGIGNA SLSAFGFVGA ALEIILIFYL MVSSVVGFYS ENSP00000326604/1-490 LLVDETAMPK GTRGPGIGNA SLSTFGFVGA ALEIILIFYL MVSSVVGFYS ENSBTAP00000041131/1-489 LLVDETAMPK GTRGPGIGNA SLSAFGFVGA ALEIILIFYL MVSSVVGFYS bmy_12872T0/1-370 LLVDETAMPK GTRGPGIGNA SLSAFGFVGA ALEIILIFYL MVSSVVGFYS BACU000745/1-473 LLVDETAMPK GTRGPGIGNA SLSAFGFVGA ALEIILIFYL MVSSVVGFYS 451 500 ENSTTRP00000009146/1-531 LRFFGNFIPK KDDTTMTKII GNCVSILVLS SALPVMSRTL GIT------- ENSP00000326604/1-490 LRFFGNFTPK KDDTTMTKII GNCVSILVLS SALPVMSRTL GIT------- ENSBTAP00000041131/1-489 LR-FGNFIPK KDDTTMTKII GNCVSILVLS SALPVMSRTL GIT------- bmy_12872T0/1-370 LRFFGNFIPK KDDTTMTKII GNCVSILVLS SALPVMSRTL G--------- BACU000745/1-473 LRFFGNFIPK KDDTTMTKII GNCVSILVLS SALPVMSRTL GFEIRACCAR 501 550 ENSTTRP00000009146/1-531 ---------- ---------- ---------- ---------- ---------- ENSP00000326604/1-490 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041131/1-489 ---------- ---------- ---------- ---------- ---------- bmy_12872T0/1-370 ---------- ---------- ---------- ---------- ---------- BACU000745/1-473 ASHLHVDWTA TGGSWLPALD SVAWRLRKTL ERSDLTSGHR EVANPGPLDS 551 600 ENSTTRP00000009146/1-531 ---------- ---------- ---------- ---------- --RFDLLGDF ENSP00000326604/1-490 ---------- ---------- ---------- ---------- --RFDLLGDF ENSBTAP00000041131/1-489 ---------- ---------- ---------- ---------- --RFDLLGDF bmy_12872T0/1-370 ---------- ---------- ---------- ---------- ---------- BACU000745/1-473 SSVKRLKADV NAISSVLAER LWLFHGTGQD ERNSAHQTSQ SFRCVMRGTC 601 650 ENSTTRP00000009146/1-531 GRFNWLGNFY IVLSYNLLFA IMTTLCLVRK FTSAVREELF KALGLHK--- ENSP00000326604/1-490 GRFNWLGNFY IVLSYNLLFA IVTTLCLVRK FTSAVREELF KALGLHK--- ENSBTAP00000041131/1-489 GRFNWLGNFY IVLSYNLLFA IVTTLCLVRK FTSAVREELF KALGLHK--- bmy_12872T0/1-370 -------KFK ---------- ---------- ---------- ---------- BACU000745/1-473 SLWTWR-TFP FQVSYSTGHP MCAVCLFICF YVDNLAGCHV SVSHLHQKVP 651 700 ENSTTRP00000009146/1-531 ----LHLSDT SRDPETTKPS ANGHQKAL- ENSP00000326604/1-490 ----LHLPNT SRDSETAKPS VNGHQKAL- ENSBTAP00000041131/1-489 ----LHLSDT PRDSDTAKPS ANGHQKAL- bmy_12872T0/1-370 ---------- ---------- --------- BACU000745/1-473 SRTWCSLPIP IRPARRLEPA REGGSGCGE