KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:25 2014 Check: 00 .. Name: ENSP00000370653/1-908 Len: 931 Check: 1726 Weight: 1.00 Name: ENSBTAP00000041132/1-914 Len: 931 Check: 483 Weight: 1.00 Name: ENSTTRP00000015081/1-907 Len: 931 Check: 8710 Weight: 1.00 Name: bmy_03836T0/1-919 Len: 931 Check: 1839 Weight: 1.00 Name: BACU010267/1-854 Len: 931 Check: 6217 Weight: 1.00 // 1 50 ENSP00000370653/1-908 MGVNDLWQIL EPVKQHIPLR NLGGKTIAVD LSLWVCEAQT VKKMMGSVMK ENSBTAP00000041132/1-914 MGVNDLWQIL EPVKQHVHLH SLSGKTIAVD LSLWVCEAQT VKKMIGTVMK ENSTTRP00000015081/1-907 MGVNDLWQIL EPVKQHVHLH SLGGKTIAVD LSLWVCEAQT VKKMIGTVMK bmy_03836T0/1-919 MGVNDLWQIL EPVKQHVHLH SLGGKTIAVD LSLWVCEAQT VKKMIGTVMK BACU010267/1-854 MGVNDLWQIL EPVKQHVHLH SLGGKTIAVD LSLWVCEAQT VKKMIGTVMK 51 100 ENSP00000370653/1-908 PHLRNLFFRI SYLTQMDVKL VFVMEGEPPK LKADVISKRN QSRYGSSGKS ENSBTAP00000041132/1-914 PHLRNLFFRI SYLTLMDVKL VFVMEGEPPH LKADVISKRN QVRYGPSGKT ENSTTRP00000015081/1-907 PHLRNLFFRI SYLTLMDVKL VFVMEGEPPK LKADVISKRN QIRYGSSTKT bmy_03836T0/1-919 PHLRNLFFRI SYLTLMDVKL VFVMEGEPPK LKADVISKRN QIRYGGSGKT BACU010267/1-854 PHLRNLFFRI SYLTLMDVKL VFVMEGEPPK LKADVISKRN QIRYGGSGKT 101 150 ENSP00000370653/1-908 WSQKTGRSHF KSVLRECLHM LECLGIPWVQ AAGEAEAMCA YLNAGGHVDG ENSBTAP00000041132/1-914 WSQKTGRSHF KSVLKECLDM LECLGIPWVQ AAGEAEAMCA YLNASGYVDG ENSTTRP00000015081/1-907 QSQKTGRSHF NSVLKECLDM LECLGIPWVQ AAGEAEAMCA YLNASGYVDG bmy_03836T0/1-919 WSQKTGRSHF KSVLKECLDM LECLGIPWVQ AAGEAEAMCA YLNASGYVDG BACU010267/1-854 WSQKTGRSHF KSVLKECLDM LECLGIPWVQ AAGEAEAMCA YLNASGYVDG 151 200 ENSP00000370653/1-908 CLTNDGDTFL YGAQTVYRNF TMNTKDPHVD CYTMSSIKSK LGLDRDALVG ENSBTAP00000041132/1-914 CLTNDGDAFL YGAQTVYRNF TMNTKDPHVD CYTMSSIKSK LGLNRDALVG ENSTTRP00000015081/1-907 CLTNDGDAFL YGAQTVYRNF TMNTKDPHVD CYTMSYIKSK LGLDRNALVG bmy_03836T0/1-919 CLTNDGDAFL YGAQTVYRNF TMNTKDPHVD CYTMSSIQSK LGLDRNALVG BACU010267/1-854 CLTNDGDAFL YGAQTVYRNF TLNTKDPHVD CYTMPSIKSK LGLDRNALVG 201 250 ENSP00000370653/1-908 LAILLGCDYL PKGVPGVGKE QALKLIQILK GQSLLQR--- ---------F ENSBTAP00000041132/1-914 LAILLGCDYL PKGVPGVGKE QALKLIKILK GQSLLQR--- --------RF ENSTTRP00000015081/1-907 LAILLGCDYL PKGVPGVGKE QALKLIKILK GQSLLQX--- ---------X bmy_03836T0/1-919 LAILLGCDYL PKGVPGVGKE QALKLIKILK GQSLLQRLGQ QLHRQRKNKF BACU010267/1-854 LAILLGCDYL PKGVPGVGKE QALKLIKILK GQSLLQR--- ---------F 251 300 ENSP00000370653/1-908 NRWNETSCNS SPQLLVTKKL AHCSVCSHPG SPKDHERNGC RLCKSDKYCE ENSBTAP00000041132/1-914 NQWSEKSCYS NSQPVLVNKL AHCSVCSHPG SSKDHERNGC KLCQTDRYCE ENSTTRP00000015081/1-907 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX SPKDHERNGC KLCKTDRYCE bmy_03836T0/1-919 NQWNEKFCYS NSQPSVVSKL AHCSVCSHPG SPKDHERNGC KLCKTDRYCE BACU010267/1-854 NQWNEKFCYS NSQPSVISKL AHCSVCSHPG SPKDHERNGC KLCKTDRYCE 301 350 ENSP00000370653/1-908 PHDYEYCCPC EWHRTEHDRQ LSEVENNIKK KACCCEGFPF HEVIQEFLLN ENSBTAP00000041132/1-914 PHDYEYRCPC EWHRTEHERQ LNAVENNIKK KACSCEGFPF HEVAQEFLLN ENSTTRP00000015081/1-907 PHDYEYCCPC EWHRTEHERQ LNAVENSIKK KACSCQGFPF HEVIQEFLLN bmy_03836T0/1-919 PHDYEYCCPC EWHRTEHERQ LNAVENSIKK KACSCEGFPF HEVIEEFLLN BACU010267/1-854 PHDYEYCCPC EWHRTEHERQ LNAVENSIKK KACSCEGFPF HEVIQEFLLN 351 400 ENSP00000370653/1-908 KDKLVKVIRY QRPDLLLFQR FTLEKMEWPN HYACEKLLVL LTHYDMIERK ENSBTAP00000041132/1-914 KDKLVKAVRY QRPDLLLFQR FTLEKMEWPN HYACEKLLTL LTHYDMTERK ENSTTRP00000015081/1-907 KDKLVMAIRY QRPDLLLFQR FALEKMEWPN HYACEKLLVL LTHYDMIERK bmy_03836T0/1-919 KDKLVTAIRY QRPDLLLFQR FTLEKMEWPS HYACEKLLTL LTHYDMIERK BACU010267/1-854 KDKLVTAI-- ---------- ---------- ---------- ---------- 401 450 ENSP00000370653/1-908 LGSRNSNQLQ PIRIVKTRIR NGVHCFEIEW EKPEHYAMED KQHGEFALLT ENSBTAP00000041132/1-914 LGRRNSNQLQ PIRIVKNRIR NGVHCFEIEW EKPEHYTIED K-HGELAVQT ENSTTRP00000015081/1-907 LGTRNSNQLQ PLRIVKNRIR NGVHCFEVEW EKPEHYSIED K-PGELVLQT bmy_03836T0/1-919 LGRRNSNQLQ PLRIVKNRIR NGVHCFEIEW EKPEHYSIED K-PGELVLQT BACU010267/1-854 ---------- --RIVKNRIR NGVHCFEIEW EKPEHYSIED K-PGELVLQT 451 500 ENSP00000370653/1-908 IEEESLFEAA YPEIVAVYQK QKLEIKGKKQ K--RIKPKEN NLPEPDEVMS ENSBTAP00000041132/1-914 IEEESLFEAA YPEIVAIYQK QKSENKGTKQ KSMKIKSKGN SLLESDEMMK ENSTTRP00000015081/1-907 IEEESLFEAA YPEIVAVYQK QKSEIKGKKQ KSMKTKSKGN SLPESDDMMT bmy_03836T0/1-919 IEEESLFEAA YPEIVAVYQK QKSEIKGKKQ KSMKTKSKGN NLPESDDMMT BACU010267/1-854 IEEESLFEAA YPEIVAVYQK QKSEIKGKKQ KSMKTKTKEN NLPESDDMMT 501 550 ENSP00000370653/1-908 FQSHMTLKPT CEIFHKQNSK LNSGISPDPT LPQESISASL NSLLLPKNTP ENSBTAP00000041132/1-914 VQSHMTLKPT WEIFPDQNSK LSLEISPCSA SPEESISTSL NVLLLAEDAA ENSTTRP00000015081/1-907 LQSHVTLKPT CEIFSKQNSK LNLEISPDST LPQES-TVPL NTLLLPEDAP bmy_03836T0/1-919 FQSHMTLKPT CEIFSKQNSX LNWEISPDST LPQESISVSL NTLLLPEDAP BACU010267/1-854 FQSHMTLKPT CEIFSKQNSK LNLEISPDST LPQESISVSL NTLLLPEDAP 551 600 ENSP00000370653/1-908 CLNAQEQFMS SLRPLAIQQI KAVSKSLISE SSQPNTSSHN ISVIADLHLS ENSBTAP00000041132/1-914 CLTAQEQLIS SPRSLAMQQI KDISKSLIAE SSQPSTSSHN ISAVADLHLS ENSTTRP00000015081/1-907 CLNTQEQLIS SPRPLAVQQI KAVSKPLIAE SSQPSTSSLN ISAIADLHLS bmy_03836T0/1-919 CLNTQEQLIS SPRPLAVQQI KAVSKSLIAE SSQPSTSSHN ISAIADLHLS BACU010267/1-854 CLNTQEQLIS SPRPLAVQQI KAVSKSLIAE SSQPSTSSHN ISAIADLHLS 601 650 ENSP00000370653/1-908 TIDWEGTSFS NSPAIQRNTF SHDLKSEVES ELSAIPDGFE NIPEQLSCES ENSBTAP00000041132/1-914 TIDWEGTSFS KSPAISRNTF THGLKSELE- --TAIPDSFK NNPEQLCCEA ENSTTRP00000015081/1-907 TIDWEGTSFS NSSAIPGNTF AHGVKSELE- --TAIPDSFK NITEQLSCES bmy_03836T0/1-919 TIDWEGTSFS NSPAIPRNTF AHGVKSELE- --TAIPDSFK NITEQLSCES BACU010267/1-854 TIDWEGTSFS NSPAIPRNTF AHGVKSELE- --TAIPDSLK NITEQLSCES 651 700 ENSP00000370653/1-908 ERYTANIKKV LDEDSDGISP EEHLLSGITD LCLQDLPLKE RIFTKLSYPQ ENSBTAP00000041132/1-914 ERHTTSVNKL SCWDLQKTNP EEHLLSGISD LHLQDLPLKE RVLIKS-YPQ ENSTTRP00000015081/1-907 EWCTTNINKQ FDWDLQKTDP EEHLLSGITD LHLQDLPLKE RIHIKSSYPQ bmy_03836T0/1-919 EWCTTNINKL FDWDLQKTDP EEHLLSGITD LHLQDLPLKE RIHIKSSYPQ BACU010267/1-854 EWCTTNINKL FDWDLQKTDP EEHLLSGITD LHLQDLPLKE RIRIKSSYPQ 701 750 ENSP00000370653/1-908 DNLQPDVNLK TLSILSVKES CIANSGSDCT SHLSKDLPGI PLQNESRDSK ENSBTAP00000041132/1-914 NTVEPDVGLK TLSLLTVKEQ CVANSTSHCP PHLSKDL-GI HLQNEPRSCK ENSTTRP00000015081/1-907 NNVQPDDDLK TLSLLTVQEH SIANSSSECL SHLSKDFLGI HLQNESRNCK bmy_03836T0/1-919 NNVQPD-DXK TLSLLTVQEH CIANSSSECL SHLSKDLLGI HLQNESRNCK BACU010267/1-854 NNIQPDDDLK TLSLLTVQEH CIANSSSECL SHLSKDLLGI HLQNESRNCK 751 800 ENSP00000370653/1-908 ILKGDQLLQE DYKVNTSVPY SVSNTVVKTC NVR--PPNTA LDHSRKVDMQ ENSBTAP00000041132/1-914 VLKGDQLFQE NDKSNTSVPL SVNDPGTKTS NVRTGPPNAT LDRSRKAGIQ ENSTTRP00000015081/1-907 VLKGNQLFPE NYKANTSIPY SVNNPIVKTS NVRIGPPNTA LDYSRKVDGQ bmy_03836T0/1-919 VLKGNQLFQE NYKANTSIPY SVNNPIAKTS SVRNGPPNTA LDYSRKGDVQ BACU010267/1-854 VLKGNQLFQE NYKANTSIPY SVNNPIVKTS NVRIGPPNTA LDYSRKVDVQ 801 850 ENSP00000370653/1-908 TTRKILMKKS VCLDRHSSDE QSAPVFGKAK YTTQRMKHSS QKHNSSHFKE ENSBTAP00000041132/1-914 IARKTVRKKS VCLDRLSSDE ESVPKFGKAK STTQKMKQSS QKHSPTQFKK ENSTTRP00000015081/1-907 TTRKTVMKKS VCLDKHSSGE EIIPESGKAK STTQKMKQSS QKHSPAQFKK bmy_03836T0/1-919 TTRKTVMKKS VCLDTHSSGE EIIPESGKAK STTQKMKQSS QKHSPAQFKK BACU010267/1-854 TTRKTVMKKS VCLDTHSSGE EIIPESGKAK STTQKMKQSS QKHSPAQFKK 851 900 ENSP00000370653/1-908 SGHNKLSSPK IHIKETEQCV RSYETAENEE SCFPDSTKSS LSSLQCHKKE ENSBTAP00000041132/1-914 NDPNKLSNPK AYIKEIEQCV QVYKTARNEE ACLPDAAKEP PSFLRNHKDK ENSTTRP00000015081/1-907 NDANKLSNPK AHIKETEQCV LPYKTAGNEE THFQDAAKWS LSFLQCHKEK bmy_03836T0/1-919 XDANKLSNPK AHIKETEQCV QPYKTAGNEE TCFQDAAKGS LSFLQCRKEK BACU010267/1-854 NDANKLSNPK AHIKETEQCV QPYKTAGNEE TCFQDAAKRS LSFLQCREEK 901 950 ENSP00000370653/1-908 NNSGTCLDSP LPLRQRLKLR FQST------ - ENSBTAP00000041132/1-914 DDSGTCLDSP LPLSQRLKLR FQNTCSMYYE T ENSTTRP00000015081/1-907 DVSDTCLDSP LPLSQRLKLR FQNT------ - bmy_03836T0/1-919 DASGTCLDSP LPLSQRLKLR FQNT------ - BACU010267/1-854 DVSGTCLDSP LPLSQRLKLR FQNT------ -