KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:27 2014 Check: 00 .. Name: ENSP00000386126/1-1446 Len: 1500 Check: 6753 Weight: 1.00 Name: ENSBTAP00000041148/1-1333 Len: 1500 Check: 5362 Weight: 1.00 Name: ENSTTRP00000016556/1-1365 Len: 1500 Check: 7915 Weight: 1.00 Name: bmy_20666T0/1-1311 Len: 1500 Check: 4478 Weight: 1.00 Name: BACU004400/1-1382 Len: 1500 Check: 1329 Weight: 1.00 // 1 50 ENSP00000386126/1-1446 -MLRTSGLAL LALVSAVGPS QASGFTEKGL SLLGYQLCSH RVTHTVQKVE ENSBTAP00000041148/1-1333 AMLRTLGMAL LALLIIVNPS QASGFTEKGL SLLGFRLCNY SVTQSVQSVK ENSTTRP00000016556/1-1365 -MLRSLVPAL LALVTAVGPS QASGFTEKGL SLLSYQLCNY SVSQHVQSVE bmy_20666T0/1-1311 -MLRTLVRAL LVLVTTVGPS QASGFTEKGL SLLSYQLCNY SVSQNVQSME BACU004400/1-1382 -MLRTLVRAL LVLVTAVGPS QASGFTEKGL SLLSYQLCNY SMSQNVQSVE 51 100 ENSP00000386126/1-1446 AVQTSYTSYV SCGGWIPWRR CPKMVYRTQY LVVEVPESRN VTDCCEGYEQ ENSBTAP00000041148/1-1333 AVQMSRLTRV PCGGWIPLWR CPKTVYQTRY LEVEVPEPRN VTDCCEGYEQ ENSTTRP00000016556/1-1365 AVHTSRLTYV PCGWWVPWRR CPKTVYRTQY LVVEVPKRRN VTDCCEGYEQ bmy_20666T0/1-1311 AAHTSRLTYV PCGWWVPWRR CPKTVYRTQY VVVEVPKRRN VTDCCEGYEQ BACU004400/1-1382 AVHTSRLTYV PCGWWVPWRR CPKTVSRTQY VVVEVPKWRN VTDCCEGYEQ 101 150 ENSP00000386126/1-1446 LGLYCVLPLN QSGQFTSRPG ACPAEGPEPS TSPCSLDIDC PGLEKCCPWS ENSBTAP00000041148/1-1333 LGLYCVLPLN RSQEFASRPG SCPVVGLETS ALLCTLDAEC PGLQKCCPSS ENSTTRP00000016556/1-1365 LGLYCVLPLN RSEEFASRPG ICPAVRPEAS TSPCTLDTDC PGLQKCCLSS bmy_20666T0/1-1311 LGLYCVLPLN RSEEFASRPG ICPVVRPEAS TLPCTLDADC PGLQKCCPSS BACU004400/1-1382 LGLYCVPPLN RSEEFASRPG ICPVVRPEAS TSPCTLDADC PGLQKCCPSS 151 200 ENSP00000386126/1-1446 GGRYCMAPAP Q--------- ---------- -APERDPVGS WYNVTILVKM ENSBTAP00000041148/1-1333 GGHRCSAPAA P--------- ---------- -APESNREAC WYNVTVVVKM ENSTTRP00000016556/1-1365 GGPRCSAPAP R--------- ---------- -APEGKLASF WYNVTVLVKM bmy_20666T0/1-1311 GGPRCSAPAP RGPSCGPSRS WACGSSLCPR AAPERKLASF WYNVTVLVKM BACU004400/1-1382 GGPRCSAPAP R--------- ---------- -APERKLASF WYNVTVLVKM 201 250 ENSP00000386126/1-1446 DFKELQQVDP RLLNHMRLLH SLVTSALQPM ASTVHHLHSA PGNASTTVSR ENSBTAP00000041148/1-1333 DFKELQQVDP RLLDHMRLLH SMVTSALQPL DTTVHHLHSA RGDTSTTVSW ENSTTRP00000016556/1-1365 DFTELQQADP RLLDHMRLLH SMVTSALQPL DTAVHHLHSA GGDTSITVSR bmy_20666T0/1-1311 DFKELQQVDP RLLDHMRLLH SMVTSALQPL DATVHHLHSA GGDTSITVSR BACU004400/1-1382 DFTELQQVDP RLLDHMRLLH SMVTSALQPL DATVHHLHSA GGDTSITVSQ 251 300 ENSP00000386126/1-1446 LLLGLPRPLP VADVSTLLGD IAKRVYEVIS VQVQDVNECF YEELNACSGR ENSBTAP00000041148/1-1333 LLLGLPRPMP VARVSAVLDG MVKRIYEVID VQVQDVNECS YGELNTCSGR ENSTTRP00000016556/1-1365 LLLDLPQPEP VARISAALDG VVKRIYEVID IRVQDVDECS YDELNACAGR bmy_20666T0/1-1311 LLLGLPQPEP VARISAVLDG VVKRVYEVIG IRVQDVDECS YDELNACPGR BACU004400/1-1382 LLLGLPQPEP VARISAALDG VVKRVYEVIG IRVQDVDECS YDELNACPGR 301 350 ENSP00000386126/1-1446 ELCANLEGSY WCVCHQEAPA TSPRKLNLEW EDCPPVSDYV VLNVTSDSFQ ENSBTAP00000041148/1-1333 ELCLNVEGSH QCV------- -HSCSLGRTT ADYPPIRDLM ILNVTSSSFQ ENSTTRP00000016556/1-1365 GRCLNMEGSH QCLGHPESPT SSPQKLDGRC EDCPPIRDLV VLNVTSSSFQ bmy_20666T0/1-1311 GRCLNMEGSY QCLSHPESPT SSPQKLDGTC EE-------- ---------- BACU004400/1-1382 GRCLNMEGSY QCLGHPESPN SSPQKLDGTC EDCPPVRDLV ILNVTSSSFQ 351 400 ENSP00000386126/1-1446 VSWRLNSTQN HTFHVRVYRG MELLRSARTQ SQALAVAGLE AGVLYRVKTS ENSBTAP00000041148/1-1333 VSWSLNSTQN HTFWVKVYQG EELFRSASTP GTSLEVARAG AGVRYGVKTS ENSTTRP00000016556/1-1365 VSWSLNSTQN CTFQVQVYQA EELLRNASTQ GTSLEVAGLE AGVLYAVRTS bmy_20666T0/1-1311 ---------- ---------- ---------- ---------- ---------- BACU004400/1-1382 VSWSLHSTQN CTFQVQVYQG EEMLRKASTR GTSLEVAGLE AGVLYGVRTS 401 450 ENSP00000386126/1-1446 YQGCGADVS- -TTLTIKTNA QVFEVTIKIV NHNLTEKLLN RSSVEYQDFS ENSBTAP00000041148/1-1333 YQACGATSLP WSLPGPKKDA RVFEVVVRIL NHSVTEELLD RGSPECQDFS ENSTTRP00000016556/1-1365 YQGCWANVT- -TTVTVKTDA RVFEVTVRIL NRNVTEGLLD RGSPEFQNFS bmy_20666T0/1-1311 ---------- ---------A RVFEVKVRIL NRNVTEGLLD RGSPEFQNFS BACU004400/1-1382 YQTCWANVT- -TMVTVRTEA RVFEVKIRIL NRNVTEGLLD RGSPEFQNFS 451 500 ENSP00000386126/1-1446 RQLLHEVESS FPPVVSDLYR SGKLRMQIVS LQAGSVVVRL KLTVQDPGFP ENSBTAP00000041148/1-1333 QQLMHEVAAS LPPAISDLYR RGKLRLQVVS LQSGSVVVRL RLTVWDSEFP ENSTTRP00000016556/1-1365 QQLLHEVATS FPPALSDLYR RGKLRMQVVS LRAGSVVVRL RLTVQDPEFP bmy_20666T0/1-1311 QQLLHEVATS FPPALSDLYR RGKLRLQVVS LRAGSVVVRL RLTVQDPEFP BACU004400/1-1382 QQLLHEVATS FPPALSDLYR RGKLRMQVVS LRAGSVVVRL RLTVQDPEFP 501 550 ENSP00000386126/1-1446 MGISTLAPIL QPLLASTVFQ IDRQGTRVQD WDECVDSAEH DCSPAAWCIN ENSBTAP00000041148/1-1333 VGVSTLAPLL PALWASTVFQ VDQQGTRVQD WDECADSLEH DCSPAAQCIN ENSTTRP00000016556/1-1365 VGVATLSPML PPLWASTVLQ VDQSETLVQD WDECADSLQH DCSPAAQCIN bmy_20666T0/1-1311 VGVSTLSPML PPLWANTVFQ VDQWETLVQD WDECADSLEH DCSPAAQCIN BACU004400/1-1382 VGVSTLSPML PPLWANTMFQ VDQWETLVQD WDECADSLEH DCSPAAQCIN 551 600 ENSP00000386126/1-1446 LEGSYTCQCR TTRDATPSRA GRACEGDLVS PMGGGLSAAT GVTVPGLGTG ENSBTAP00000041148/1-1333 LEGSYTCRCR TARDANPSRP GRVCHGDMES PT-DVPSPVS EVTASVPSTE ENSTTRP00000016556/1-1365 LEGSYTCRCR TARDAHPSRP GRACDGDVVS PTGGAPSPVT GETAPGPGTE bmy_20666T0/1-1311 LEGSYTCRCR TARDAHPSRP GRACDGDAVS PTGGAPSPVT GETAPGPSTE BACU004400/1-1382 LEGSYPCQCR TARDAHPSRP GRACDGDALS PTGGAPSPVT GETAPGPRTE 601 650 ENSP00000386126/1-1446 TAALGLENFT LSPSPGYPQG TPAAGQAWTP EPSPRRGGSN VVGYDRNNTG ENSBTAP00000041148/1-1333 TTSFSLETPA LSPGPGHLWS TPAAGQAWTL GLPPRRGVSG LGSHSGNSTG ENSTTRP00000016556/1-1365 TTALGLESPP LSPSPGYPRR TTAAGQAWTP GLPPRTGVSG VLGRGRNSTG bmy_20666T0/1-1311 TTALGLETPA LSPSPGYSWG TTAAGQAWTP GLPPRRGVSS MLGHGRNSTG BACU004400/1-1382 TKALGLETPT LSPSPGYPWG TTAAGQAWTP GLPPRRGGSG MLGHGRNSTG 651 700 ENSP00000386126/1-1446 KGVEQEVPST APGLGMDQGS PSQVNPSQGS PSQGSLRQES TSQASPSQRS ENSBTAP00000041148/1-1333 Q--------- ---------- ---------- ---------- ---------- ENSTTRP00000016556/1-1365 PAVDGE-PSV APGLGTSQW- GQRVA----- ---------- ---------- bmy_20666T0/1-1311 QAVEEE-ASV APGLGTSQWT ASRVA----- ---------- ---------- BACU004400/1-1382 QAVEEE-ASV APGLGTSRWT ASRVA----- ---------- ---------- 701 750 ENSP00000386126/1-1446 TSQGSPSQVN PSQRSTSHAN SSQGSPSQGS PSQESPSQGS TSQASPSHRN ENSBTAP00000041148/1-1333 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016556/1-1365 ---------- ---------- ---------- ---------- ---------- bmy_20666T0/1-1311 ---------- ---------- ---------- ---------- ---------- BACU004400/1-1382 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000386126/1-1446 TIGVIGTTSS PKATGSTHSF PPGATDGPLA LPGQLQGNSI MEPPSWPSPT ENSBTAP00000041148/1-1333 ---------- --VPGPTHSS SLGATDSLPD TPGQSPPNST EELPFWPTPA ENSTTRP00000016556/1-1365 -----G-TFS SRAPGPTHSS PLGAMDSLPA SPGWLRPNPT TEPLFRPAPT bmy_20666T0/1-1311 -----GTTFS SRAPGPTHSS PSGAMDSLSD SLGWLPPNST TEPPFRPAPT BACU004400/1-1382 -----GTTFS SRAPGPTHSS PPGAMDSLPD SPGWLPPNST TEPPFRPAPT 801 850 ENSP00000386126/1-1446 EDPTGHFLWH ATRSTRETL- --LNPTWLRN EDSGPSGSVD LPLTSTLTAL ENSBTAP00000041148/1-1333 PDPRGHIEWH SSLPVRDTPP APLDPTWAQN LDPRPFSSPD QPLAPTPAPL ENSTTRP00000016556/1-1365 QRPIDHVEWH ASLPTRDMPP VPLDPAWPQN SDPGPSGSPD LPSATTPASL bmy_20666T0/1-1311 QGPMDHIDWH ASLPTRDTPP VSLDPAWPQN SDPGPSGSPD LPSATTPASL BACU004400/1-1382 QGPMDHVEWH ASLPTRDTPP VPLDPAWPKN SDPGPSGSPD LPSATTPASL 851 900 ENSP00000386126/1-1446 KTPACVPVSI GRIMVSNVTS TGFHLAWEAD LAMDSTFQLT LTSMWSPAVV ENSBTAP00000041148/1-1333 KTPACAPVPI GRVTVSNVTS TGFHVAWVAD PTLRPTFQLS LVSARSPTMH ENSTTRP00000016556/1-1365 KTPACAPTPI GRVTVSNVTS TGFHMTWVAD LTLRPTFQLT LVSARTPTVH bmy_20666T0/1-1311 KTPACAPMPI RRVIVSNVTS TGFHVAWVAD LTLXPTFQLT LISARTPTVH BACU004400/1-1382 KTPTCAPMPI RRVIVSNVTS TGFHVAWVAD LTLRPTFQLT LISARTPTVH 901 950 ENSP00000386126/1-1446 LETWNTSVTL SGLEPGVLHL VEIMAKACGK EGARAHLKVR T--------- ENSBTAP00000041148/1-1333 LQTQKASLTL SGLEPGVLYL VEIVARACGQ ESAKAQLKVR T--------- ENSTTRP00000016556/1-1365 LESQNASLTL SGLEPGVLYL VEIVAKACGK ESSRAHLKVR T--------- bmy_20666T0/1-1311 LETRNANLTL SGLEPGVLYL VEIVAKACGK ESARARLKVR T--------- BACU004400/1-1382 LETRNASLTL SGLEPGVLYL VEIVAKACGK ESARAHLKVR TDLDLAFRKD 951 1000 ENSP00000386126/1-1446 -----AARKL IGKVRIKNVR YSESFRNASS QEYRDFLELF FRMVRGSLPA ENSBTAP00000041148/1-1333 -----VAQKL SGKVRIVNVR YLESFSNTSS EQFQAFLELF LRTVRNSLPA ENSTTRP00000016556/1-1365 -----AAQKL SGKVRIVNVK YLESFRNASS KEYQAFLELF FR-VRNSLPA bmy_20666T0/1-1311 -----AAQKL SGKVRIANVK YLESFRNASS KEYQAFLELF FRMVRNSLPA BACU004400/1-1382 DDGQISAQKL SGKVKIANVN YSESFRNASS KEYQAFLELF FRMVRNSLPA 1001 1050 ENSP00000386126/1-1446 TMCQHMDAGG VRMEVVSVTN GSIVVEFHLL IIADVDVQEV SAAFLTAFQT ENSBTAP00000041148/1-1333 FMLQHLDTGG VRIEVTGISN GSVVVEFTLL VITDVDVWEV SAAFLAAFRN ENSTTRP00000016556/1-1365 SMLQHLDTGG VQVEVTRISS GSVVVEFNLL VIADVDVREV SATFLAAFQN bmy_20666T0/1-1311 SMLQHLDTGG VQVEVTRIYS GSVVVEFNLL VIADMDVREV SATFLAAFQN BACU004400/1-1382 SMLQHLDTGG VQVEVTRISS GSVVVEFNLL VIADVDVREV SATFLAAFQN 1051 1100 ENSP00000386126/1-1446 VPLLEVIRGD TFIQDYDECE RKEDDCVPGT SCRNTLGSFT CSCEGGAPDF ENSBTAP00000041148/1-1333 TSLLEVVRDD TFIGDYDECA SQEDDCAPGS ACRNTLGSFT CSCEGGAPDL ENSTTRP00000016556/1-1365 ASLLEVVGGD PFIVDYDECD SGEDDCAPGS SCRNSLGSFT CSCEGGTPDL bmy_20666T0/1-1311 APLLEVVGGD PFIVDYDECD SGEDDCAPGS SCRNSLGSFT CSCEGGTPDL BACU004400/1-1382 APLLEVVGGD PFITDYDECD SGEDDCAPGS SCRNSLGSFT CSCEGGTPDL 1101 1150 ENSP00000386126/1-1446 PVEYSERPCE GDSPGNETWA TSPERPLTTA GTKAAFVQGT SPTPQGLPQR ENSBTAP00000041148/1-1333 LVEFSGRPCE GDSPGNTTQP PGPEQPPTPT GAGAASGQDA RPATQGLSPR ENSTTRP00000016556/1-1365 PVEYSGRPCE GDSPGNTPQA TGPEQPPTPA GPGAASVQGA RPAPQDLSPR bmy_20666T0/1-1311 PVEYSGRPCE GDSPGNTSQT PGPEQPPTPA GPGAASVQGA RPAPQGLSPR BACU004400/1-1382 PVEYSGRPCE GDSPGNTSQI PGPEQPPTPA GPGAASVQGA RPAPQGLSPR 1151 1200 ENSP00000386126/1-1446 LNLTGAVRVL CEIEKVVVAI QKRFLQQESI PESSLYLSHP SCNVSHSNGT ENSBTAP00000041148/1-1333 LNLTGAVRVL CEIEKVAIVI QRHFLQQKGI PESSLYLGQP SCNISDRNST ENSTTRP00000016556/1-1365 LNLTGAVRVL CEIEKVAIAI QKRFLQQESI PESSLYLGHP SCNVSDHNST bmy_20666T0/1-1311 LNLTGAVRVL CEIEKVAIAI QKRFLKQESI PESSLYLGHP SCNVSDHNST BACU004400/1-1382 LNLTGAVRVL CEIEKVAIAI QRRFLQQESI PESSLYLGHP SCNVSDHNST 1201 1250 ENSP00000386126/1-1446 HVLLEAGWSE CGTLMQSNMT NTVVRTTLRN DLSQEGIIHH LKILSPIYCA ENSBTAP00000041148/1-1333 HVTLAATWSE CGTTLQSNMT TTVVRTTLRN DVSPEGIIHH MKIESPIHCA ENSTTRP00000016556/1-1365 HVILVAAWGE CGTVMQSNMT NTVVRTTLRN DLSPEGIIHH LKILSPIHCA bmy_20666T0/1-1311 HVILVAAWGE CGTVVQSNMT NTVVRTTLRN DLSPEGIIHH LKILSPIHCA BACU004400/1-1382 HVILVAAWGE CGTVVQSNMT NTVVRTTLRN DLSPEGIIHH LKILSPIHCA 1251 1300 ENSP00000386126/1-1446 FQNDLLTSSG FTLEWGVYTI IEDLHGAGNF VTEMQLFIGD SPIPQNYSVS ENSBTAP00000041148/1-1333 FQNDLLTSSG YTPEWGVYTI IEDLHGAGSF ITEMQLFIGD SPIPQNYSVS ENSTTRP00000016556/1-1365 FQNDLLTSSG YTPEWGVYTV IEDLHGAGSF VTEMQLFIGD SPIPQNYTVS bmy_20666T0/1-1311 FQNDLLTSSG YTPEWGVYTA IEDLHGAGSF VTEMQLFIGD SPIPQNYTVS BACU004400/1-1382 FQNDLLTSSG YTPEWGVYTI IEDLHGAGSF VTEMQLFIGD SPIPQNYTVS 1301 1350 ENSP00000386126/1-1446 ASDDVRIEVG LYRQKSNLKV VLTECWATPS SNARDPITFS FINNSCPVPN ENSBTAP00000041148/1-1333 ASDDVKIEVG LYKQKSNLKV VLTECWATPS SDARDPVMFG FINNSCPIPN ENSTTRP00000016556/1-1365 ASDDVKIEVG LYKQKSNLKV VLTECWATPS SNARDPVMFG FINNSCPIPN bmy_20666T0/1-1311 ASDDIKIEVG LYKQKSNLKV VLTECWATPS SNARDPVMFG FINNSCPIPN BACU004400/1-1382 ASDDVKIEVG LYKQKSNLKV VLTECWATPS SNARDPVMFG FINNSCPIPN 1351 1400 ENSP00000386126/1-1446 TYTNVIENGN SNKAQFKLRI FSFINDSIVY LHCKLRVCME SPGATCKINC ENSBTAP00000041148/1-1333 THTNVIENGN SNKARFKLKI FSFINNSIVY LHCKLRICME SPGATCKINC ENSTTRP00000016556/1-1365 THTNVIENGN SNKAQFKLKI FSFINNSIVY LHCKLRICME SPGTTCKINC bmy_20666T0/1-1311 THTNVIENGN SSKAQFKLKI FSFINNSVVY LHCKLRICME SPGTTCKI-- BACU004400/1-1382 THTNVIENGN SNKAQFKLKI FSFINNSIVY LHCKLRICME SPGTTCKINC 1401 1450 ENSP00000386126/1-1446 NNFRLLQNSE TSATHQMSWG P--------- ----LIRSE- GEPPHAEAGL ENSBTAP00000041148/1-1333 DDFRSLRSSE PSVMHQMSWG P--------- ----LIRSEA GSPLAAGLGL ENSTTRP00000016556/1-1365 DDFRSLRNGE PSATHQMSWG P--------- ----LIRSE- GEPPAAKPGL bmy_20666T0/1-1311 --VRPIPSPP SRGHAGAPLG PGPAALGRPP SCACFIPA-- GEPPAAKPGL BACU004400/1-1382 DDFRSLRNGE PSATHQMSWG P--------- ----LIRSE- GEPPAAKPGL 1451 1500 ENSP00000386126/1-1446 GAGYVVLIVV AIFVLVAGTA TLLIVRYQRM NGRYNFKIQS NNFSYQVFYE ENSBTAP00000041148/1-1333 GAGYLVLIVG TACALVAGAT ALLVRHYQRM IGKYDFKVRT DNFSYQVFHE ENSTTRP00000016556/1-1365 RASYLVLTLV AAFALVAGPA ALLIMRYQRT TGKYNLKTQS DNFRYQVFHE bmy_20666T0/1-1311 GAGYLVLILV AAFALVAGSA ALLIMRYQRM TGKYNFKTQS DNFSYQVFHE BACU004400/1-1382 GAGYLVLILV AAFALVAGPA ALLIMRYQRM TGKYNFKTQS DNFSYQVFHE