KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:29 2014 Check: 00 .. Name: ENSP00000251527/1-893 Len: 931 Check: 5512 Weight: 1.00 Name: ENSTTRP00000012268/1-884 Len: 931 Check: 9338 Weight: 1.00 Name: ENSBTAP00000041167/1-875 Len: 931 Check: 4101 Weight: 1.00 Name: bmy_17387T0/1-818 Len: 931 Check: 3003 Weight: 1.00 Name: BACU000756/1-755 Len: 931 Check: 5421 Weight: 1.00 // 1 50 ENSP00000251527/1-893 ---MTPPSRA E---AGVRRS RVPSEGRWRG A---EPPGIS ASTQPASAGR ENSTTRP00000012268/1-884 ---LTSPPRA EARAGGQGGC AVPSKGRWRG AEVRRPG--- ---------T ENSBTAP00000041167/1-875 --RLRRPLRG A--------- --LQRGLRRL G---REP--- ---------R bmy_17387T0/1-818 MMTVASPTRT ---------- -------WLL P---APF--- ---------R BACU000756/1-755 ---------- ---------- -------MRE C---KAT--- ---------P 51 100 ENSP00000251527/1-893 AARHCGAMSG ARGEGPEAGA GGAGGRAAPE NPGGVLSVEL PGLLAQLARS ENSTTRP00000012268/1-884 GALRGGAMSG ARAPGPEAGA AGA------E PPGAALSVDV AGLLVQLARS ENSBTAP00000041167/1-875 GAVRGGAMSG SRAPGPEVGA SGA------E PPGAALSVDV AGLLAQLARS bmy_17387T0/1-818 GLRLEAK--- -----PESGV GPQ------- ---------- ---------- BACU000756/1-755 G--------- ---------- ---------- ---------- ---------- 101 150 ENSP00000251527/1-893 FALLLPVYAL GYLGLSFSWV LLALALLAWC RRSRGLKALR LCRALALLED ENSTTRP00000012268/1-884 FALLLPVYAL GYLGLSFSWV LLALGLLVWC RRSRDLRSRL C-RALALLKD ENSBTAP00000041167/1-875 FALLLPVYAL GYLGLSFSWV LLALGLLVWT AGAAALRPPA CAETLALLED bmy_17387T0/1-818 ---------- ---------- ---------- ---------- --RGIFLVQT BACU000756/1-755 -------YLL G------SW- ---------- ---------- ---------- 151 200 ENSP00000251527/1-893 EERVVRLGVR ACDLPAWVHF PDTERAEWLN KTVKHMWPFI CQFIEKLFRE ENSTTRP00000012268/1-884 EERAVRLWVS ACHLPA-VHF PDTERAEWLN KTVKHMWPFI CQFIEKLFRE ENSBTAP00000041167/1-875 EERAVRLGVR ACDLPAWVHF PDTERAEWLN KTVKHMWPFI CQFIEKLFRE bmy_17387T0/1-818 CLRCIVQLCQ NCSFQD-VHF PDTERAEWLN KTVKHMWPFI CQFIEKLFRE BACU000756/1-755 ---------- -------VHF PDTERAEWLN KTVKHMWPFI CQFIEKLFRE 201 250 ENSP00000251527/1-893 TIEPAVRGAN THLSTFSFTK VDVGQQPLRI NGVKVYTENV DKRQIILDLQ ENSTTRP00000012268/1-884 TIEPAVRGAH THLSTFSFTR VDVGQQPLRI NGVKVYTENV DKRQIILDLQ ENSBTAP00000041167/1-875 TIEPAVRGAH THLSTFSFTR VDLGQQPLRI NGVKVYTENV DKRQIILDLQ bmy_17387T0/1-818 TIEPAVRGAH THLSTFSFTR VDVGQQPLRI NGVKVYTENV DKRQIILDLQ BACU000756/1-755 TIEPAVRGAH THLSTFSFTR VDVGQQPLRI NGVKVYTENV DKRQIILDLQ 251 300 ENSP00000251527/1-893 ISFVGNCEID LEIKRYFCRA GVKSIQIHGT MRVILEPLIG DMPLVGALSI ENSTTRP00000012268/1-884 ISFVGNCEID LEIKRYFCRA GVQSIQIHGT MRVILEPLIG DMPLVGALSI ENSBTAP00000041167/1-875 ISFVGNCEID LEIKRYFCRA GVQSIQIHGT MRVILEPLIG DMPLVGALSI bmy_17387T0/1-818 ISFVGNCEID LEIKRYFCRA GVQSIQIHGT MRVILEPLIG DMPLVGALSI BACU000756/1-755 ISFVGNCEID LEIKRYFCRA GVQSIQIHGT MRVILEPLIG DMPLVGALSI 301 350 ENSP00000251527/1-893 FFLRKPLLEI NWTGLTNLLD VPGLNGLSDT IILDIISNYL VLPNRITVPL ENSTTRP00000012268/1-884 FFLRKPLLEI NWTGLTNLLD IPGLNGLSDT IILDIISNYL VLPNRITVPL ENSBTAP00000041167/1-875 FFLRKPLLEI NWTGLTNLLD IPGLNGLSDT IILDIISNYL VLPNRITVPL bmy_17387T0/1-818 FFLRKPLLEI NWTGLTNLLD IPGLKGLSDT IILDIISNYL VLPNRITVPL BACU000756/1-755 FFLRKPLLEI NWTGLTNLLD IPGLNGLSDT IILDIISNYL VLPNRITVPL 351 400 ENSP00000251527/1-893 VSEVQIAQLR FPVPKGVLRI HFIEAQDLQG KDTYLKGLVK GKSDPYGIIR ENSTTRP00000012268/1-884 VSEVQIAQLR FPIPKGVLRI HFIEAQDLQG KDTYLKGLIK GKSDPYGVIR ENSBTAP00000041167/1-875 VSEVQIAQLR FPVPKGVLRI HFIEAQDLQG KDTYLKGLVK GKSDPYGVIR bmy_17387T0/1-818 VSEVQIAQLR FPIPKGVLRI HFIEAQDLQG KDTYLKGLVK GKSDPYGVIR BACU000756/1-755 VSEVQIAQLR FPIPKGVLRI HFIEAQDLQG KDTYLKGLVK GKSDPYGVIR 401 450 ENSP00000251527/1-893 VGNQIFQSRV IKENLSPKWN EVYEALVYEH PGQELEIELF DEDPDKDDFL ENSTTRP00000012268/1-884 VGNQIFQSKV IKENLSPKWN EVYEALVYEH PGQELEIELF DEDPDKDDFL ENSBTAP00000041167/1-875 VGNQIFQSKV IKENLSPKWN EVYEALVYEH PGQELEIELF DEDPDKDDFL bmy_17387T0/1-818 VGNQIFQSKV IKENLSPKWN EVYEALVYEH PGQELEIELF DEDPDKDDFL BACU000756/1-755 VGNQIFQSKV IKENLSPKWN EVYEALVYEH PGQELEIELF DEDPDKDDFL 451 500 ENSP00000251527/1-893 GSLMIDLIEV EKERLLDEWF TLDEVPKGKL HLRLEWLTLM PNASNLDKVL ENSTTRP00000012268/1-884 GSLMIDLIEV EKERLLDEWF TLDEVLRGKL HLKLEWLTLM PDASNLEKVL ENSBTAP00000041167/1-875 GSLMIDLIEV EKERLLDEWF TLDEVPRGKL HLKLEWLTLM PDASNLEQVL bmy_17387T0/1-818 GSLMIDLIEV EKERLLDEWF TLDEVLRGKL HLKLEWLTLM PDASNLEKVL BACU000756/1-755 GSLMIDLIEV EKERLLDEWF TLDEVLRGKL HLKLEWLTLM PDASNLEKVL 501 550 ENSP00000251527/1-893 TDIKADKDQA NDGLSSALLI LYLDSARNLP ---------- ---------- ENSTTRP00000012268/1-884 TDIRADKDQA NDGLSSSLLV LYLDSARNLP ---------- ---------- ENSBTAP00000041167/1-875 TDIRADKDQA NDGLSSSLLI LYLDSARNLP ---------- ---------- bmy_17387T0/1-818 TDIRADKDQA NDGLSSSLLI LYLDSARNLP SNPLEFNPDV LKKAAIQKAL BACU000756/1-755 TDIRADKDQA NDGLSSSLLI LYLDSARNLP ---------- ---------- 551 600 ENSP00000251527/1-893 -SGKKISSNP NPVVQMSVGH KAQESKIRYK TNEPVWEENF TFFIHNPKRQ ENSTTRP00000012268/1-884 -SGKKINSNP NPLVQMSVGH KAQESKIRYK TNEPVWEENF TFFVHNPKRQ ENSBTAP00000041167/1-875 -SGKKINSNP NPLVQMSVGH KAQESKIRYK TNEPVWEENF TFFIHNPKRQ bmy_17387T0/1-818 KSGKKINSNP NPLVQMSVGH KAQESKIRYK TNEPVWEENF TFFIHNPKRQ BACU000756/1-755 -SGKKIYSNP NPLVQMSVGH KAQESKIRYK TNEPVWEENF TFFIHNPKRQ 601 650 ENSP00000251527/1-893 DLEVEVRDEQ HQCSLGNLKV PLSQLLTSED MTVSQRFQLS NSGPNSTIKM ENSTTRP00000012268/1-884 ELEVEVKDEQ HQCCLGNLRI PLSQLLACED MTLNQRFQLS NSGPNSSLKM ENSBTAP00000041167/1-875 ELEVEVRDEQ HQCSLGNLRI PLSQLLARED MTLNQRFQLS NSGPNSSLKM bmy_17387T0/1-818 ELXVEVKDEQ HQCCLGNLRI PLSQLLPCED MTLNRRFQLS NSGPNSSLKM BACU000756/1-755 ELEVEVKDEQ HQCCLGNLRI PLSQLLSCED MTLNRRFQLS NSGPNSSLKM 651 700 ENSP00000251527/1-893 KIALR--VLH LEKRERPPDH QHSAQVKRPS VSKEGRKTSI KSHMSGSPGP ENSTTRP00000012268/1-884 KLALR--VLH LEKQERSPDH QHSAQVKRPS VSKEGRKISV RSQMSASPGT ENSBTAP00000041167/1-875 KLALRPEVLH LEKQERPPDH QHSAQVKRPS VSKEGRKVSV RPQMSASPGS bmy_17387T0/1-818 KLALR--VLH LEKQERSPDH QHSAQVKRPS VSKEGRKISV RSHMSASPGT BACU000756/1-755 KLALR--VLH LEKQERSPDH QHAAQVKRPS VSKEGRKISV RSHMSASPGT 701 750 ENSP00000251527/1-893 GGSNTAPSTP VIGGSD-KPG MEEKAQPPEA GPQGLHDLGR SSSSLLA--- ENSTTRP00000012268/1-884 ADSSTAPSTP VMGGCDNKPG VEERAQPAEA SPQGPRDLGR SSSSLQAGST ENSBTAP00000041167/1-875 GDGGTAPSTP VAGG-DERPG VEERGLPVEA GLQGPRDLGR SSSSLQAGPT bmy_17387T0/1-818 GDSSTAPSTP VIGGCDNKPG VEERAQPAEA SPQGPRDLGR SSSSLQASST BACU000756/1-755 GDSCTAPSTP VSGGCDNKPG VEERAQPAEA SPQGPRDLGR SSSSLQAGST 751 800 ENSP00000251527/1-893 -SPGHISVKE PTPSIASDIS LPIATQELRQ RLRQLENGTT LGQSPLGQIQ ENSTTRP00000012268/1-884 GSPSHVSVKE PTPSIASDIS LPVATQELRQ RLRQLENGTT LGQSPLGQIQ ENSBTAP00000041167/1-875 GSPSHVSVKE PTPSIASDIS LPIATQELRQ RLRQLENGTT LGQSPLGQIQ bmy_17387T0/1-818 GSPSHVSVKE PTPSIASDIS LPVATQELRQ RLRQLENGTT LGQSPLGQIQ BACU000756/1-755 GSPSHVSVKE PTPSIASDIS LPVATQELRQ RLRQLENGTT LGQSPLGQIQ 801 850 ENSP00000251527/1-893 LTIRHSSQRN KLIVVVHAC- RNLIAFSEDG SDPYVRMYLL PDKRRSGRRK ENSTTRP00000012268/1-884 LTVRHSSQRN KLVVVVHSC- RNLIAFSEDG SDPYVRLYLL PDKRRSGRRK ENSBTAP00000041167/1-875 LTIRHSSQRN KLVVVVHSCR RNLIAFSEDG SDPYVRLYLL PDKRRSGRRK bmy_17387T0/1-818 LTVRHSSQRN KLVVVVHSC- RNLIAFSEDG SDPYVRLYLL PDKRRSGRRK BACU000756/1-755 LTVRHSSQRN KLVVVVHSC- RNLIAFSEDG SDPYVRLYLL PDKRRSGRRK 851 900 ENSP00000251527/1-893 THVSKKTLNP VFDQSFDFSV SLPEVQRRTL DVAVKNSGGF LSKDKGLLGK ENSTTRP00000012268/1-884 THVSKKTLNP VFDQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041167/1-875 THVSKKTLNP VFDQSFDFSV SLPDVQRRTL DVAVKNSGGF LSKDKGLLGK bmy_17387T0/1-818 THVSKKTLNP VFDQSFDFSV SLPDVQRRTL DVAVKNSGGF LSKDKGLLGK BACU000756/1-755 THVSKKTLNP VFDQSFDFSV SLPDVQRRTL DVAVKNSGGF LSKDKGLLGK 901 950 ENSP00000251527/1-893 VLVALASEEL AKGWTQWYDL TEDGTRPQAM T ENSTTRP00000012268/1-884 VLVGLASEEL AKGWTQWYDL TEDGTRPHVV T ENSBTAP00000041167/1-875 VLVGLASEEL AKGWTQWYDL TEDGTRPHVV T bmy_17387T0/1-818 VLVGLASEEL AKGWTQWYDL TEDGTRPHVV T BACU000756/1-755 VLVGLASEEL AKGWTQWYDL TEDGTRPHVV T