KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:30 2014 Check: 00 .. Name: ENSBTAP00000041195/1-502 Len: 616 Check: 8522 Weight: 1.00 Name: ENSP00000385527/1-497 Len: 616 Check: 7162 Weight: 1.00 Name: BACU010233/1-571 Len: 616 Check: 2454 Weight: 1.00 Name: bmy_05490T0/1-403 Len: 616 Check: 7719 Weight: 1.00 Name: ENSTTRP00000012737/1-497 Len: 616 Check: 3714 Weight: 1.00 // 1 50 ENSBTAP00000041195/1-502 ---------- ---------- --------MA VYREAIPGPA LETPSTSLEA ENSP00000385527/1-497 ---------- ---------- ---------- --MAAPPAPA AKGSPQP-EP BACU010233/1-571 MSELSCRMQK STARARPVLN AFILSVASIP YADSVLPLRH LGAKDCGLQE bmy_05490T0/1-403 ---------- ---------- ---------- --LLCLPQ-- ---------- ENSTTRP00000012737/1-497 ---------- ---------- ---------- --MAVSPDPA VETPPHPPEA 51 100 ENSBTAP00000041195/1-502 HTSAQGS--- ---------- ---------- ---------- ---------- ENSP00000385527/1-497 HAPEPGPGSA KRGRE----- ---------- ---------- ---------- BACU010233/1-571 KARLRGPLGT LTSQGNVEIQ DDLGQIRTER LLEKPSRHRD LRMLLEVKGL bmy_05490T0/1-403 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012737/1-497 HTLEPGSVSA NQGERG---- ---------- ---------- ---------- 101 150 ENSBTAP00000041195/1-502 ----DSGAGR LSFYRKLCYG IGGVPNQVAS SAIAFYLQLF LLDVAQIPAA ENSP00000385527/1-497 ----DSRAGR LSFCTKVCYG IGGVPNQIAS SATAFYLQLF LLDIAQIPAA BACU010233/1-571 EGVVDSGAGR LSFCTKVCYG IGGVPNQVAS SAIAFYLQLF LLDVAQIPAA bmy_05490T0/1-403 ----DSEAGR LSFCTKVCYG IGGVPNQVAS SAIAFYLQLF LLDVAQIPAA ENSTTRP00000012737/1-497 ----DSGAGR LSFCTKVCYG IGGVPNQVAS SAIAFYLQLF LLDVAQIPAA 151 200 ENSBTAP00000041195/1-502 QVSLVLFGGK VSGAAADPLA GFLINRSRRT GSGRLMPWVL GCMPFIALAY ENSP00000385527/1-497 QVSLVLFGGK VSGAAADPVA GFFINRSQRT GSGRLMPWVL GCTPFIALAY BACU010233/1-571 QVSLVLFGGK VSGAAADPLA GFFINRSRRT GSGRLMPWVL GCTPFIAVAS bmy_05490T0/1-403 QVSLVLFGGK VSGAAADPLA GFFINRSRRT GSGRLMPWVL GCTPFIALAS ENSTTRP00000012737/1-497 QVSLVLFGGK VSGAAADPLA GFFINRSRRT GSGRLMPWVL GCTPFIALAS 201 250 ENSBTAP00000041195/1-502 FFLWFLPPFT TLRGLWYTTL YCLFQALAT- ---------- ---------- ENSP00000385527/1-497 FFLWFLPPFT SLRGLWYTTF YCLFQALAT- ---------- ---------- BACU010233/1-571 FFLWFLPPFT SLRGLWYTAL YCLFQALAT- ---------- ---------- bmy_05490T0/1-403 FFLWFLPPFT SLRGLWYTAL YCLFQALATV SRWPPSSAWT PGTPVLAGGP ENSTTRP00000012737/1-497 FFLWFLPPFT SLRGLWYTAL YSLFQALAT- ---------- ---------- 251 300 ENSBTAP00000041195/1-502 ---------- --------FF QVPYTALTML LTPNPKERDS ATAYRMTLEM ENSP00000385527/1-497 ---------- --------FF QVPYTALTML LTPCPRERDS ATAYRMTVEM BACU010233/1-571 ---------- ---------- -VPYTALTML LTPSPRERDS ATVYRMTLEM bmy_05490T0/1-403 SEVCVCWGRH PKLCPVPQFF QVPYTALTML LTPSPRERDS ATVYRMTLEM ENSTTRP00000012737/1-497 ---------- --------FF QVPYTALTML LTPSPRERDS ATVYRMTLEM 301 350 ENSBTAP00000041195/1-502 AGTLMGATVH GLIVSGAHGS HRCKEDTLPG EGAVSPNATR LYFIAATVVA ENSP00000385527/1-497 AGTLMGATVH GLIVSGAHRP HRCEATATPG PVTVSPNAAH LYCIAAAVVV BACU010233/1-571 AGTLMGATVH GLIVSGAHGS HRCKETALPG QVAVSPNATR LYCIAATVVA bmy_05490T0/1-403 AGTLMGATVH GLIVSGAHGS HRCKETALPG QVAVSPNATR LYCIAATVVA ENSTTRP00000012737/1-497 AGTLMGATVH GLIVSGAHGS HRCKETALPG QVAVSPNATR LYSIAATVVA 351 400 ENSBTAP00000041195/1-502 LTYPVCSTLL YLGVKERSDP STPASGQGLG FLAGLGLTVR HRPYLNLVIS ENSP00000385527/1-497 VTYPVCISLL CLGVKERPDP SAPASGPGLS FLAGLSLTTR HPPYLKLVIS BACU010233/1-571 VTYPVCSSLL CLGVKERPDA SPRASGQGLS FLAGLRLTVR HPPYLKLVIS bmy_05490T0/1-403 VTYPVCSSLL CLGVKERPDA SARASGQGLG FLAGLRLTVR HPPYLKLVIS ENSTTRP00000012737/1-497 VTYPVCSSLL CLGVKERPDA SARASGQGLS FLAGLRLTVR HPPYLKLVIS 401 450 ENSBTAP00000041195/1-502 FLFISAAVQV EQSYLVLFCT HASQLQDHVQ GMVLTILVSA VLSTPMWEWV ENSP00000385527/1-497 FLFISAAVQV EQSYLVLFCT HASQLHDHVQ GLVLTVLVSA VLSTPLWEWV BACU010233/1-571 FLFISAAVQV EQSYLVLFCT HASRLHDHVQ SLVLTILVSA VLSTPMWEWV bmy_05490T0/1-403 FLFISAAVQV EQSYLVLFCT HASRLHDHVQ SLVLTILVSA VLSTPMWEWV ENSTTRP00000012737/1-497 FLFISAAVQV EQSYLVLFCA HASRLHDHVQ SLVLTILVSA VLSTPMWEWV 451 500 ENSBTAP00000041195/1-502 LQRFGKRMSA LGICAMVPFA ILLAAVPMVP VAYVVAFVSG LSIAVSLLLP ENSP00000385527/1-497 LQRFGKKTSA FGIFAMVPFA ILLAAVPTAP VAYVVAFVSG VSIAVSLLLP BACU010233/1-571 LQRFGKRMSA FGIFGMVPLA ILLAAVPTAP VAYVVAFVSG VSIAVSLLLP bmy_05490T0/1-403 LQRFGKRMSA FGIFGMVPFA ILLAAVPTAP VAYIVAFVSG VSIAVSLLLP ENSTTRP00000012737/1-497 LQRFGKRMSA FGIFGMVPFA ILLAAMPTAP VAYVVAFVSG VSIAVSLLLP 501 550 ENSBTAP00000041195/1-502 WSMLPDVVDD FQLQHQHGPG LETIFYSSYV FFTKLSGAGA LGISTLSLDF ENSP00000385527/1-497 WSMLPDVVDD FQLQHRHGPG LETIFYSSYV FFTKLSGACA LGISTLSLEF BACU010233/1-571 WSMLPDVVDE FQLQHQHGPG LETIFYSSYV FFTKLSGAGA LGISTLSLDF bmy_05490T0/1-403 W--------- ---------- ---------- ---------- ---------- ENSTTRP00000012737/1-497 WSMLPDVVDE FQLQHQHGPG LETIFYSSYV FFTKLSGAGA LGISTLSLDF 551 600 ENSBTAP00000041195/1-502 AGYESGACRQ SEQVVVTLKV LIGAVPTSMI LIGLCILMVG PTPKVPSRAN ENSP00000385527/1-497 SGYKAGVCKQ AEEVVVTLKV LIGAVPTCMI LAGLCILMVG STPKTPSRDA BACU010233/1-571 AGYESGACKQ AEQVVVTLKV LIGAVPTCMI LIGLCILMVS PAPKVPSRTS bmy_05490T0/1-403 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012737/1-497 AGYESGACKQ AEQVVVTLKV LIGAMPTCMI LIGLCILMVG PTPKVPSRNS 601 650 ENSBTAP00000041195/1-502 SRSLGSSRRR TSYTLA ENSP00000385527/1-497 SSRLS---LR R----- BACU010233/1-571 SRSLG---RR TSYSLA bmy_05490T0/1-403 ---------- ------ ENSTTRP00000012737/1-497 SRSLG---R- ------