KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:31 2014 Check: 00 .. Name: ENSTTRP00000016311/1-1171 Len: 1320 Check: 2090 Weight: 1.00 Name: ENSP00000400908/1-1173 Len: 1320 Check: 2597 Weight: 1.00 Name: ENSBTAP00000041206/1-1198 Len: 1320 Check: 2203 Weight: 1.00 Name: bmy_08318T0/1-1159 Len: 1320 Check: 5474 Weight: 1.00 Name: BACU000930/1-1154 Len: 1320 Check: 7602 Weight: 1.00 // 1 50 ENSTTRP00000016311/1-1171 MPEPTKKEEN EVLAPAPAPP REEPNKEKQA GTSPAKDEEE ASPPGALPPG ENSP00000400908/1-1173 MPEPTKKEEN EV--PAPAPP PEEPSKEKEA GTTPAK---- ---------- ENSBTAP00000041206/1-1198 MPEPTKKEEN EVLAPAPAPP PEEPNKEKEA GTAPVKEPNK EKEAGTAPAK bmy_08318T0/1-1159 MGDIVFPVEN EVLAPAPAPP RE-------- ---------- ---------- BACU000930/1-1154 MPEPTKKEEN EVLAPAPAPP REEPNKEKEA RTSPAK---- ---------- 51 100 ENSTTRP00000016311/1-1171 SGSRALERKD S--------- ---------- ---------- -EWSVGESPS ENSP00000400908/1-1173 ---------- ---------- ---------- ---------- -DWTLVETPP ENSBTAP00000041206/1-1198 EPNKEKEAGT APAKEPNKEK EAGTSPGKDE EDASPPGGLP PEWSIGESPA bmy_08318T0/1-1159 ---------- ---------- ---------- ---------- ---------- BACU000930/1-1154 ---------- ---------- ---------- ---------- -EWSVGESPA 101 150 ENSTTRP00000016311/1-1171 GEDQDKQTAN NQLSTLFVEK PQGGTVKVGG SITFIAKVKA EDLLRKPTIK ENSP00000400908/1-1173 GEEQAKQNAN SQLSILFIEK PQGGTVKVGE DITFIAKVKA EDLLRKPTIK ENSBTAP00000041206/1-1198 GEEQDKQNAN SQLSILFVEK PQGGTVKVGE NITFIAKVKA EDLLRKPTVK bmy_08318T0/1-1159 ---------- ---------- --------GE SITFIAKVKA EDLLRKPTIK BACU000930/1-1154 GEEQDKQNAN NQLSTLFVEK PQGGTVKVGE NITFIAKVQA EDLLRKPTIK 151 200 ENSTTRP00000016311/1-1171 WFKGKWMDLA SKAGKHLQLK ETFERHSRVY TFEMQIIQAK ENYAGNYRCE ENSP00000400908/1-1173 WFKGKWMDLA SKAGKHLQLK ETFERHSRVY TFEMQIIKAK DNFAGNYRCE ENSBTAP00000041206/1-1198 WFKGKWMDLA SKAGKHLQLK ETFERHSRVY TFEMQIIKAK ENYAGNYRCE bmy_08318T0/1-1159 WFKGKWMDLA SKAGKHLQLK ETFERHSRVY TFEMQIIQAK ENYAGNYRCE BACU000930/1-1154 WFKGKWMDLA SKAGKHLQLK ETFERHSRVY TFEMQIIQAK ENYAGNYRCE 201 250 ENSTTRP00000016311/1-1171 VTYKDKFDSC SFDLEVHEST GTTPNIDIRS AFEI-GEGQE DAGELDFSGL ENSP00000400908/1-1173 VTYKDKFDSC SFDLEVHEST GTTPNIDIRS AFKRSGEGQE DAGELDFSGL ENSBTAP00000041206/1-1198 VTYKDKFDSC SFDLEVLEST GTTPNIDIRS AFKRSGEGQD DAGELDFSGL bmy_08318T0/1-1159 VSYKDKFDSC SFDLEVHEST GTTPSLDIRS AFKRSGEGQE DAGELDFSGL BACU000930/1-1154 VTYKDKFDSC SFDLEVHEST GTTPSIDIRS AFKRSGEGQE DAGELDFSGL 251 300 ENSTTRP00000016311/1-1171 LKRREVKQQE EEPEIDVWEL LKNAKPSEYE KIAFQYGITD LRGMLKRLKR ENSP00000400908/1-1173 LKRREVKQQE EEPQVDVWEL LKNAKPSEYE KIAFQYGITD LRGMLKRLKR ENSBTAP00000041206/1-1198 LKRREVKPQE EQPEVDVWEL LKNAKPSEYE KIAFQYGITD LRGMLRRLKR bmy_08318T0/1-1159 LKRREVKQQE EEPEVDVWEL LKNAKPSEYE KIAFQYGITD LRGMLRRLKR BACU000930/1-1154 LKRREVKQQE EVPEVDVWEL LKNAKPSEYE KIAFQYGITD LRGMLKRLKR 301 350 ENSTTRP00000016311/1-1171 MRRVEKKSAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000400908/1-1173 MRREEKKSAA FAKILDPAYQ VDKGGRVRFV VELADPKLEV KWYKNGQEIR ENSBTAP00000041206/1-1198 MRRVEKKSAA FARILDPAYQ VDKGGRVRFV VELADPKLEV KWYKNGQEIR bmy_08318T0/1-1159 MRRVEKKSAA FAKILDPAYQ VDKGGRVRFA VELADPKLEV KWYKNGQEIR BACU000930/1-1154 MRRVEKKSAA FAKILDPAYQ VDKGGRVRFA VELADPKLEV KWYKNGQEIR 351 400 ENSTTRP00000016311/1-1171 XXXXYIFEHK GCERIMFINN CVLTDDSEYY VTAGDEKCST ELFVREPPVI ENSP00000400908/1-1173 PSTKYIFEHK GCQRILFINN CQMTDDSEYY VTAGDEKCST ELFVREPPIM ENSBTAP00000041206/1-1198 PSTKYIFEHK GCERIMFINN CVLTDDSEYY VTAGDEKCST ELFVREPPVM bmy_08318T0/1-1159 PSTKYIFEHK GCERIMFINN CVLTDDSEYY VTAGDDKCST ELFVRGKVKF BACU000930/1-1154 PSTKYIFEHK GCERIMFINN CVLTDDSEYY VTAGEDKCST ELFVREPPVL 401 450 ENSTTRP00000016311/1-1171 VTKQLEDTKA YCGDRVELEC EVSEDDAHVK WFKNGEEIVP GPRSRHYIKV ENSP00000400908/1-1173 VTKQLEDTTA YCGERVELEC EVSEDDANVK WFKNGEEIIP GPKSRYRIRV ENSBTAP00000041206/1-1198 VTKQLEDTKA YCGERVELEC EVSEDDANVK WFKNGEEIIP GPKSRYHIRV bmy_08318T0/1-1159 LTVAIK---- ---------- --SQQLSFSQ GFKNGEEIIP GPRSRHYIKV BACU000930/1-1154 VTKQLEDTRA YCGDRVELEC EVSEDDAHVK WFKNGEEIIP GPRSRYYIKV 451 500 ENSTTRP00000016311/1-1171 EGKKHILVIE EATKADTAEY SVMTTGGQSS AKLTVDLKPL KILTPLTDQT ENSP00000400908/1-1173 EGKKHILIIE GATKADAAEY SVMTTGGQSS AKLSVDLKPL KILTPLTDQT ENSBTAP00000041206/1-1198 EGKKHILIID GATKADSAEY SVMTTGGQSS AKLSVDLKPL KILTPLTDQT bmy_08318T0/1-1159 DGKKHILVIE EATKADTAEY SVMATGGQSS AKLTIDLKPL KILTPLTDQT BACU000930/1-1154 DGKKHILVID EATKADTAEY SVMTTGGQSS AKLSIDLKPL KILTPLTDQT 501 550 ENSTTRP00000016311/1-1171 VNLGKEICLK CEISENLSGK WTKNGLPIQE TDRLKIVHRG RIHKLVIANA ENSP00000400908/1-1173 VNLGKEICLK CEISENIPGK WTKNGLPVQE SDRLKVVHKG RIHKLVIANA ENSBTAP00000041206/1-1198 VNLGKEICLK CEVSENITGK WTKNGLPVQE TDHLKIVHKG RIHKLVIANA bmy_08318T0/1-1159 VNLGKEICLK CEISENLSGK WTKNGLPIQE SDHLKIVHRG RIHKLVVTNA BACU000930/1-1154 VNLGKEICLK CEISENLSGK WTKNGLPIQE SDRLKIVHRG RIHKLVVTNA 551 600 ENSTTRP00000016311/1-1171 LVEDEGDYVF APDAYSVTLP AKVHVIDPPK IILDGLDADN TVTVIAGNKL ENSP00000400908/1-1173 LTEDEGDYVF APDAYNVTLP AKVHVIDPPK IILDGLDADN TVTVIAGNKL ENSBTAP00000041206/1-1198 LVEDEGDYVF TPDDYSVTLP AKVHVVDPPK INLDGLDADN TVTVIAGNKL bmy_08318T0/1-1159 LVEDEGDYVF APDAYSVTLP AKVHVIDPPK INLDGLDADN TVTVIAGNKL BACU000930/1-1154 LVEDEGDYVF APDAYSLILP AKVHVIDPPK INLDGLDADN TVTVIAGNKL 601 650 ENSTTRP00000016311/1-1171 RLEIPISGEP PPKAIWSRAD KAIMEGGSRI RTENYPDSTT LVIDVAEKDD ENSP00000400908/1-1173 RLEIPISGEP PPKAMWSRGD KAIMEGSGRI RTESYPDSST LVIDIAERDD ENSBTAP00000041206/1-1198 RLEIPISGEP PPKALWSRAD KAIMEGSGRI RSENYPDSTT LVIDIAEKDD bmy_08318T0/1-1159 RLEIPISGEP PPKAIWSRAD KAIMEGSSRI RAEHYPGSTT LVIDVAEKDD BACU000930/1-1154 RLEIPISGEP PPKAIWSRAD KAIMEGSSRI RAEHYPDSTT LVIDVAEKDD 651 700 ENSTTRP00000016311/1-1171 SGLYHINLKN EAGEAHAAIT IKVVDVPDPP VAPNVTHVGD EWCIMNWDPP ENSP00000400908/1-1173 SGVYHINLKN EAGEAHASIK VKVVDFPDPP VAPTVTEVGD DWCIMNWEPP ENSBTAP00000041206/1-1198 SGVYHINLKN EAGEAHASIK IKVVDIPDPP VAPNVTDVGD DWCIMTWDPP bmy_08318T0/1-1159 SGVYHINLKN EAGEAHAAIT IKVVDVPDPP VAPKVAHVGD DWCIMNWEPP BACU000930/1-1154 SGVYHINLKN EAGEAHAAIT IKVVDVPDPP VAPSVTHVGD DWCIMNWEPP 701 750 ENSTTRP00000016311/1-1171 LYDGGSPILG YFIERKKKQS SRWMRLNFDL CKETTFEPKN MIEGVAYEVR ENSP00000400908/1-1173 AYDGGSPILG YFIERKKKQS SRWMRLNFDL CKETTFEPKK MIEGVAYEVR ENSBTAP00000041206/1-1198 LYDGGSPILG YFIERKKKQS SRWMRLNFDL CKETIFEPKK MIEGVAYEVR bmy_08318T0/1-1159 LYDGGSPILG YFIERKKKQS SRWMRLNFDL CKETTFEPKK MIEGVAYEVR BACU000930/1-1154 LYDGGSPVVG YFIERKKKQS SRWMRLNFDL CKETTFEPKK MIEGVAYEVR 751 800 ENSTTRP00000016311/1-1171 IFAVNAVGLS KPSMPSKPFV PLAVTSPPTL LTVDSVTDTT VTMKWRPPDQ ENSP00000400908/1-1173 IFAVNAIGIS KPSMPSRPFV PLAVTSPPTL LTVDSVTDTT VTMRWRPPDH ENSBTAP00000041206/1-1198 IFAVNAVGIS KPSMPSKPFV PLAVTSPPTL LTVDSVTDTT VTMKWRPPDQ bmy_08318T0/1-1159 IFAVSAVGLS KPSMPSKPFV PLAVTSPPTL LAVDSVTDTT VTMKWRPPDH BACU000930/1-1154 IFAVNAVGLS KPSMPSKPFV PLAVTSPPTL LAVDSVTDTT VTMKWRPPDH 801 850 ENSTTRP00000016311/1-1171 IGAAGLDGYV LEYCFEGT-- ---------- ------DNWI VANTELIEKT ENSP00000400908/1-1173 IGAAGLDGYV LEYCFEGSTS AKQSDENGEA AYDLPAEDWI VANKDLIDKT ENSBTAP00000041206/1-1198 IGAAGLDGYV LEYCFEGSTS AKQSDENGEA AYDLPADDWI AANTELIEKT bmy_08318T0/1-1159 IGAAGLDGYV LEYCFEGSTS AKQSGENGEA AYDLPADSWI VANTELIEKT BACU000930/1-1154 IGAAGLDGYV LEYCFEGT-- ---------- ------DSWI VANTELIEKT 851 900 ENSTTRP00000016311/1-1171 KFTITGLPTD ARIFVRVKAV NAAGASEPKY YSQPILVKEI V--------- ENSP00000400908/1-1173 KFTITGLPTD AKIFVRVKAV NAAGASEPKY YSQPILVKEI I--------- ENSBTAP00000041206/1-1198 KFTITGLPTD SRIYVRVKAV NAAGASEPKY YSQPILVKEI I--------- bmy_08318T0/1-1159 KFTITGLPKD ARIFVRVKAV NAAGASEPKY YSQPILVKEI VGRWQGFQNF BACU000930/1-1154 KFTITGLPTD ARIFVRVKAV NAAGASDPKY YSQPILVKEI I--------- 901 950 ENSTTRP00000016311/1-1171 ---------- ---------- ---------- --EAPKIRIP RHLKQTYIRR ENSP00000400908/1-1173 ---------- ---------- ---------- --EPPKIRIP RHLKQTYIRR ENSBTAP00000041206/1-1198 ---------- ---------- ---------- --EAPKIRIP RHLKQTYIRR bmy_08318T0/1-1159 GSPGEYHDKY AYVMLLPVYD TDCKTTLFYS HSEAPKIRIP RHLKQTYIRR BACU000930/1-1154 ---------- ---------- ---------- --EAPKIRIP RHLKQTYIRR 951 1000 ENSTTRP00000016311/1-1171 VGEAINLVIP FQGKPRPEVT WKKDGAPIDK NQINIRNSET DTIIFIRKAE ENSP00000400908/1-1173 VGEAVNLVIP FQGKPRPELT WKKDGAEIDK NQINIRNSET DTIIFIRKAE ENSBTAP00000041206/1-1198 VGEAINLVIP FQGKPRPELI WTKDGAPIDK NQINIRNSET DTIVFIRKAE bmy_08318T0/1-1159 VGEAINLVIP FQGKPRPELT WKKDGAPIDK NQINIRNSET DTIIFIRKAE BACU000930/1-1154 VGEAINLVIP FQGKPRPELT WKKDGAPIDK NQINIRNSET DTIIFIRKAE 1001 1050 ENSTTRP00000016311/1-1171 RSHSGKYDLQ VKVEKYVETA SIDIQVV--- ---------- ---------- ENSP00000400908/1-1173 RSHSGKYDLQ VKVDKFVETA SIDIQII--- ---------- ---------- ENSBTAP00000041206/1-1198 RSHSGKYDLQ VKVEKFVETA SIDIRVI--- ---------- ---------- bmy_08318T0/1-1159 RSHSGKYDLQ VKVEKFVETA SIDIQVVVTL MENEEFLLNV RKVYLNRVKQ BACU000930/1-1154 RSHSGKYDLQ VKVEKYVETA SIDIQVV--- ---------- ---------- 1051 1100 ENSTTRP00000016311/1-1171 ---------- ---------D RPGPPQVVKI DDVWGENVAL SWTPPKDDGN ENSP00000400908/1-1173 ---------- ---------D RPGPPQIVKI EDVWGENVAL TWTPPKDDGN ENSBTAP00000041206/1-1198 ---------- ---------D RPGPPQLVKI EDVWGENVAL SWTPPRDDGN bmy_08318T0/1-1159 LKXELWLVVQ GLDTYLSKQD RPGPPQLVKI NDVWGENVAL SWLPPKDDGN BACU000930/1-1154 ---------- ---------D RPGPPQVVKI NDVWGENVAL SWLPPKDDGN 1101 1150 ENSTTRP00000016311/1-1171 TAITGYTIQK ADKKSMEWFT VIEHYHRTSA TITELVIGNE YYFRVFAENM ENSP00000400908/1-1173 AAITGYTIQK ADKKSMEWFT VIEHYHRTSA TITELVIGNE YYFRVFSENM ENSBTAP00000041206/1-1198 TAITGYTIQK ADKKSMEWFT VIEHYHRTSA TITELVIGNE YYFRVFAENM bmy_08318T0/1-1159 TAITGYTIQK ADKKSMEWFT VIEHYHRTSA TITELVIGNE YYFRVFAENM BACU000930/1-1154 TAITGYTIQK ADKKSMEWFT VIEHCHRTSA TITELVIGNE YYFRVFAENM 1151 1200 ENSTTRP00000016311/1-1171 CGLSEDATMT KESALIAKDX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000400908/1-1173 CGLSEDATMT KESAVIARDG KIYKNPVYED FDFSEAPMFT QPLVNTYAIA ENSBTAP00000041206/1-1198 CGLSEDATMT KESAVIAKDG KIYKNPVYED FDFTEAPMFT QPLVNTYAVA bmy_08318T0/1-1159 CGLSEDATMT KESAVIAKDG KIYKNPVYED FNFTEAPMFT QPLVNTYAIA BACU000930/1-1154 CGLSEDVTMT KESAVIAKDG KIYKNPVYED FNFTEAPMFT QPLVNTYAIA 1201 1250 ENSTTRP00000016311/1-1171 XXXXXXXXXX XXXXXPKITW LKNKVAIVDD PRYRMFSNQG VCTLEIRKPS ENSP00000400908/1-1173 GYNATLNCSV RGNPKPKITW MKNKVAIVDD PRYRMFSNQG VCTLEIRKPS ENSBTAP00000041206/1-1198 GYNATLNCSV RGNPKPKITW MKNKVVIKDD PRYRMFSNQG VCTLEIRKPS bmy_08318T0/1-1159 GYNATLNCSV RGNPKPKITW MKNKVAIVDD PRYRMFSNQG VCTLEIRKPS BACU000930/1-1154 GYNATLNCSV RGNPKPKITW MKNKVAIVDD PRYRMFSNQG VCTLEIRKPS 1251 1300 ENSTTRP00000016311/1-1171 PYDGGTYSCK AVNDLGAMEI ECKLEVK--- ----VIYQGV NSPGQPIFLA ENSP00000400908/1-1173 PYDGGTYCCK AVNDLGTVEI ECKLEVK--- ----VIYQGV NTPGQPVFLE ENSBTAP00000041206/1-1198 PYDGGTYCCK AVNDLGTVEI ECKLEVK--- ----VVAQ-- ---------- bmy_08318T0/1-1159 PYDGGTYSCK AVNDLGAVEI ECKLEVK--- ----VVAQ-- ---------- BACU000930/1-1154 PYDGGTYSCK AVNDLGAVEI DCKLEVKGGL SFCRLLLQGV PPNVIDSYLR 1301 1350 ENSTTRP00000016311/1-1171 GQQQLHSKDF ---------- ENSP00000400908/1-1173 GQQQVGSPSA DSSCKAYLQT ENSBTAP00000041206/1-1198 ---------- ---------- bmy_08318T0/1-1159 ---------- ---------- BACU000930/1-1154 NLHSSNPEEY ----------