KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:51:32 2014 Check: 00 ..
Name: ENSP00000295150/1-206 Len: 396 Check: 6055 Weight: 1.00
Name: bmy_05484T0/1-288 Len: 396 Check: 3913 Weight: 1.00
Name: ENSTTRP00000012746/1-204 Len: 396 Check: 6844 Weight: 1.00
Name: ENSBTAP00000041217/1-318 Len: 396 Check: 5954 Weight: 1.00
//
1 50
ENSP00000295150/1-206 ---------- --MAATKTAS YDEHFRPEKL REW------- ----------
bmy_05484T0/1-288 MKEFKEVEKA KLHSRFPGIS NSRHFMTAN- -EWLKLPTNY IESEFCKRSR
ENSTTRP00000012746/1-204 ---------- --MAATKMSN YDKHFGPEQL -KW------- ----------
ENSBTAP00000041217/1-318 ---------- -------MSN CGKHFGPEQL EKW------- ----------
51 100
ENSP00000295150/1-206 ---------- -----PEPES VSLME----- ---------- ---------V
bmy_05484T0/1-288 LKVKVNFNES SFDLKPSAKT PHLLESQEEE KAVVYKRLAY NSVFLKSPKA
ENSTTRP00000012746/1-204 ---------- -----PEPES VALME----- ---------- ---------A
ENSBTAP00000041217/1-318 ---------- -----PELES VTLME----- ---------- ---------A
101 150
ENSP00000295150/1-206 LAREDIDEAV CAILFKENSI V--------- ---------- ----------
bmy_05484T0/1-288 LAREDIDEAV YVILFRENYV AKRLDTYFQH LDVFKERRKE LLHKKWTENV
ENSTTRP00000012746/1-204 LAREDIDEAV YVILFRENYV A--------- ---------- ----------
ENSBTAP00000041217/1-318 LAREDIDEAV YAILFRENCI AKRLDTYFQH LDAFKERKKE LLHKKWTENV
151 200
ENSP00000295150/1-206 ---------- ---------- ---------- ---------- ----------
bmy_05484T0/1-288 AKPLQQRITE KVISYKGLEK TKQENSEYFL KHTNKTEIIF GDFYDPEVYN
ENSTTRP00000012746/1-204 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000041217/1-318 AKPLQQRIME KVISYKALEK TKQENFEYFL KHTNKTEIIF GDFYDPEVYN
201 250
ENSP00000295150/1-206 ---------- --KVTVPPFV DPLFQRQQEV DEERRTGLQC ETGKRHSIKE
bmy_05484T0/1-288 PFYMTKKDSN YGKVTVPPFC DPLFRRQQEL DEERRAVFQY KTGFRNQ---
ENSTTRP00000012746/1-204 ---------- --KVTVPPFC DPLFRRQQEL DEERRAIFQY KMGKRCTLKE
ENSBTAP00000041217/1-318 PFYMTKKDPN YGKVAVPPFC DPLFIRQQEI DEEQRAVFQY TTGKRCTLKE
251 300
ENSP00000295150/1-206 LEEIEKARLH ASSPYFTFTS HCVIPKEWHK ASAR--ARSK TYKYSPEKLI
bmy_05484T0/1-288 ---------- --------TA QTQILGGWGR PAEA--GVTA RGRKSDDS--
ENSTTRP00000012746/1-204 FKELEKARQY ARLPQLTFSL HRVVPREQPT ASARPVGSKT RSKCSPEKLV
ENSBTAP00000041217/1-318 FKELEKARQY ARLPQFTFSL HSMVSKDRPK AFARPVGSKT HSKCSPEKLV
301 350
ENSP00000295150/1-206 YADKK-QKRK EKKTADLSQA AFERQFLSSK LSQKNKVGER KGLVSRGLGR
bmy_05484T0/1-288 ---------- ---------- ---------- ------RGPR -------AAP
ENSTTRP00000012746/1-204 CAEEKYLPDK EKTTSDLSQT VSERQFYSSK LGQE--KAEK KSLVSRDLGQ
ENSBTAP00000041217/1-318 CAEEKFPPYK VKMTSDVNQT VFERRFYSSK ISQESKRHEK KGLA---LGT
351 400
ENSP00000295150/1-206 G------WHA GLCSTHEQHI LVPE------ ---------- ------
bmy_05484T0/1-288 G-------HP RNC------- -AP------- ---------- ------
ENSTTRP00000012746/1-204 G------SDA ELCNIHRQT- -SPE------ ---------- ------
ENSBTAP00000041217/1-318 GQHRPRSWAA GEGQQRRRS- -QPVDRRVMT AEVLGQHLAA LQLGDR