KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:41 2014 Check: 00 .. Name: bmy_20018T0/1-818 Len: 893 Check: 5782 Weight: 1.00 Name: BACU012115/1-725 Len: 893 Check: 5773 Weight: 1.00 Name: ENSP00000354621/1-757 Len: 893 Check: 2823 Weight: 1.00 Name: ENSBTAP00000041274/1-770 Len: 893 Check: 9449 Weight: 1.00 Name: ENSTTRP00000002810/1-738 Len: 893 Check: 9472 Weight: 1.00 // 1 50 bmy_20018T0/1-818 MTLKLALLAG L-GS------ VFSSSVAVPS PLGLPDPFAK IVVDGSGQCH BACU012115/1-725 MTLKLALLAG L-GS------ VFSPSVAVPS PLGLPDPFAK IVVDGSGQCH ENSP00000354621/1-757 MSNPGTRRNG S-SIKIRLTV LCAKNLAKKD FFRLPDPFAK IVVDGSGQCH ENSBTAP00000041274/1-770 -CDPGSFKNT LINSPILFLV LCAKNLAKKD FFRLPDPFAK IVVDGSGQCH ENSTTRP00000002810/1-738 ---------- ---------- LCAKNLAKKD FFRLPDPFAK IVVDGSGQCH 51 100 bmy_20018T0/1-818 STDTVKNTLD PKWNQHYDLY VGKTDSITIS VWNHKKIHKK QGAGFLGCVR BACU012115/1-725 STDTVKNTLD PKWNQHYDLY VGKTDSITIS VWNHKKIHKK QGAGFLGCVR ENSP00000354621/1-757 STDTVKNTLD PKWNQHYDLY VGKTDSITIS VWNHKKIHKK QGAGFLGCVR ENSBTAP00000041274/1-770 STDTVKNTLD PKWNQHYDLY VGKTDSITIS VWNHKKIHKK QGAGFLGCVR ENSTTRP00000002810/1-738 STDTVKNTLD PKWNQHYDLY VGKTDSITIS VWNHKKIHKK QGAGFLGCVR 101 150 bmy_20018T0/1-818 LLSNAISRLK DTGYQRLDLC KLNPSDTDAV RGQIVGTLEE VNIVFCYFDE BACU012115/1-725 LLSNAISRLK DTGYQRLDLC KLNPSDTDAV RGQIV----- ---------- ENSP00000354621/1-757 LLSNAISRLK DTGYQRLDLC KLNPSDTDAV RGQIV----- ---------- ENSBTAP00000041274/1-770 LLSNAISRLK DTGYQRLDLC KLNPSDTDAV RGQIV----- ---------- ENSTTRP00000002810/1-738 LLSNAISRLK DTGYQRLDLC KLNPSDTDAV RGQIV----- ---------- 151 200 bmy_20018T0/1-818 EHRQHSISFC STFPRSVPSV SLQTRDRIGT GGSVVDCRGL LENEG----- BACU012115/1-725 ---------- ---------V SLQTRDRIGT GGSVVDCRGL LENEG----- ENSP00000354621/1-757 ---------- ---------V SLQTRDRIGT GGSVVDCRGL LENEG----- ENSBTAP00000041274/1-770 ---------- ---------V SLQTRDRIGT GGSVVDCRGL LESEGCVPPG ENSTTRP00000002810/1-738 ---------- ---------V SLQTRDRIGT GGSVVDCRGL LENEG----- 201 250 bmy_20018T0/1-818 ---------- ---------- ---------- -------TAY EDSGPGRPLS BACU012115/1-725 ---------- ---------- ---------- -------TAY EDSGPGRPLS ENSP00000354621/1-757 ---------- ---------- ---------- -------TVY EDSGPGRPLS ENSBTAP00000041274/1-770 CWRSRCGRAP RTPFHCVEYL RCREGLGDTT TIQFPCLTVY EDSGPGRPLS ENSTTRP00000002810/1-738 ---------- ---------- ---------- -------TAY EDSGPGRPLS 251 300 bmy_20018T0/1-818 CFMEEPAPYT DGTGAAAGGG GCRSVESPSQ DQRLQAQRLR SPEVRGSLQT BACU012115/1-725 CFMEEPAPYT DGTGAAAGGG GCRSVESPSQ DQRLQAQRLR SSEVRGSLQT ENSP00000354621/1-757 CFMEEPAPYT DSTGAAAGGG NCRFVESPSQ DQRLQAQRLR NPDVRGSLQT ENSBTAP00000041274/1-770 CFMEEPAPYT DGPGAAAGGG NCRFVESPSQ DQRLQAQRLR NPEVRGSLQT ENSTTRP00000002810/1-738 CFMEEPAPYT DGTGAAAGGG GCRSVESPSQ DQRLQAQRLR SPEVRGSLQT 301 350 bmy_20018T0/1-818 PQNRPHGHQS PELPEGYEQR TTVQGQVYFL HTQTGVSTWH DPRI------ BACU012115/1-725 PQNRPHGHQS PELPEGYEQR TTVQGQVYFL HTQTGVSTWH DPRI------ ENSP00000354621/1-757 PQNRPHGHQS PELPEGYEQR TTVQGQVYFL HTQTGVSTWH DPRIPSPSGT ENSBTAP00000041274/1-770 PQNRPHGHQS PELPEGYEQR TTVQGQVYFL HTQTGVSTWH DPRI------ ENSTTRP00000002810/1-738 PQNRPHGHQS PXXXXXXXQR TTVQGQVYFL HTQTGVSTWH DPRIPSPLGT 351 400 bmy_20018T0/1-818 ---------- ---------- PRDLNSVNCD ELGPLPPGWE VRSTVSGRIY BACU012115/1-725 ---------- ---------- PRDLNSVNCD ELGPLPPGWE VRSTVSGRIY ENSP00000354621/1-757 IPGGDAAFLY EFLLQGHTSE PRDLNSVNCD ELGPLPPGWE VRSTVSGRIY ENSBTAP00000041274/1-770 ---------- ---------- PRDLNSVNCD ELGPLPPGWE VRSTVSGRIY ENSTTRP00000002810/1-738 IPRGDEAFLY QFLLQGHTSE PRDLNSVNCD ELGPLPPGWE VRSTVSGRIY 401 450 bmy_20018T0/1-818 FVDHNNRTTQ FTDPRLHHIM KTLLAGASSR AIVPGGRGPG YDLGSHTPRS BACU012115/1-725 FVDHNNRTTQ FTDPRLHHIM ---------- ---------- ---------- ENSP00000354621/1-757 FVDHNNRTTQ FTDPRLHHIM ---------- ---------- ---------- ENSBTAP00000041274/1-770 FVDHNNRTTQ FTDPRLHHIM ---------- ---------- ---------- ENSTTRP00000002810/1-738 FVDHNNRTTQ FTDPRLHHIM ---------- ---------- ---------- 451 500 bmy_20018T0/1-818 RFASLRVGTL LAATLAAALG ATSMLLFFSS HQCQLKEPSQ PLPLPSEGSV BACU012115/1-725 ---------- ---------- ---------N HQCQLKEPSQ PLPLPSEGSV ENSP00000354621/1-757 ---------- ---------- ---------N HQCQLKEPSQ PLPLPSEGSL ENSBTAP00000041274/1-770 ---------- ---------- ---------T HQCQLKEPSQ PPPPPSEGSV ENSTTRP00000002810/1-738 ---------- ---------- ---------N HQCQLKEPSQ PLPLPSEGSV 501 550 bmy_20018T0/1-818 EDEELPAQRY ERDLVQKLKV LRHELSLQQP QAGHCRIEVS REEIFEESYR BACU012115/1-725 EDEELPAQRD ERDLVQKLKV LRHELSLQQP QAGHCRIEVS REEIFEESYR ENSP00000354621/1-757 EDEELPAQRY ERDLVQKLKV LRHELSLQQP QAGHCRIEVS REEIFEESYR ENSBTAP00000041274/1-770 EDEELPAQRY ERDLVQKLKV LRHELSLQQP QAGHCRIEVS REEIFEESYR ENSTTRP00000002810/1-738 EDEELPAQRY ERDLVQKLKV LRHELSLQQP QAGHCRIEVS REEIFEESYR 551 600 bmy_20018T0/1-818 QIMKMRPKDL KKRLMVKFRG EEGLDYGGVA REWLYLLCHE MLNPYYGLFQ BACU012115/1-725 QIMKMRPKDL KKRLMVKFRG EEGLDYGGVA REWLYLLCHE MLNPYYGLFQ ENSP00000354621/1-757 QIMKMRPKDL KKRLMVKFRG EEGLDYGGVA REWLYLLCHE MLNPYYGLFQ ENSBTAP00000041274/1-770 QIMKMRPKDL KKRLMVKFRG EEGLDYGGVA REWLYLLCHE MLNPYYGLFQ ENSTTRP00000002810/1-738 QIMKMRPKDL KKRLMVKFRG EEGLDYGGVA REWLYLLCHE MLNPYYGLFQ 601 650 bmy_20018T0/1-818 YSTDNIYMLQ INPDSSINPD HLSYFHFVGR IMGLAVFHGH YINGGFTVPF BACU012115/1-725 YSTDNIYMLQ INPDSSINPD HLSYFHFVGR IMGLAVFHGH YINGGFTVPF ENSP00000354621/1-757 YSTDNIYMLQ INPDSSINPD HLSYFHFVGR IMGLAVFHGH YINGGFTVPF ENSBTAP00000041274/1-770 YSTDNIYMLQ INPDSSINPD HLSYFHFVGR IMGLAVFHGH YINGGFTVPF ENSTTRP00000002810/1-738 YSTDNIYMLQ INPDSSINPD HLSYFHFVGR IMGLAVFHGH YINGGFTVPF 651 700 bmy_20018T0/1-818 YKQLLGKPIQ LSDLESVDPE LHKSLVWILE NDITPVLDHT FCVEHNAFGR BACU012115/1-725 YKQLLGKPIQ LSDLESVDPE LHKSLVWILE NDITPVLDHT FCVEHNAFGR ENSP00000354621/1-757 YKQLLGKPIQ LSDLESVDPE LHKSLVWILE NDITPVLDHT FCVEHNAFGR ENSBTAP00000041274/1-770 YKQLLGKPIQ LSDLESVDPE LHKSLVWILE NDITPVLDHT FCVEHNAFGR ENSTTRP00000002810/1-738 YKQLLGKPIQ LSDLESVDPE LHKSLVWILE NDITPVLDHT FCVEHNAFGR 701 750 bmy_20018T0/1-818 ILQHELKPNG RNVPVTEENK REYVRLYVNW RFMRGIEAQF LALQKGFNEL BACU012115/1-725 ILQHELKPNG RNVPVTEENK KEYVRLYVNW RFMRGIEAQF LALQKGFNEL ENSP00000354621/1-757 ILQHELKPNG RNVPVTEENK KEYVRLYVNW RFMRGIEAQF LALQKGFNEL ENSBTAP00000041274/1-770 ILQHELKPNG RNVPVTEENK KEYVRLYVNW RFMRGIEAQF LALQKGFNEL ENSTTRP00000002810/1-738 ILQHELKPNG RNVPVTEENK KEYVRLYVNW RFMRGIEAQF LALQKGFNEL 751 800 bmy_20018T0/1-818 IPQHLLKPFD QKELELIIGG LDKIDLDDWK SNTRLKHCGA DSNVVRWFWQ BACU012115/1-725 IPQHLLKPFD QKELELIIGG LDKIDLDDWK SNTRLKHCGA DSNVVRWFWQ ENSP00000354621/1-757 IPQHLLKPFD QKELELIIGG LDKIDLNDWK SNTRLKHCVA DSNIVRWFWQ ENSBTAP00000041274/1-770 IPQHLLKPFD QKELELIIGG LDKIDLDDWK SNTRLKHCGA DSNVVRWFWQ ENSTTRP00000002810/1-738 IPQHLLKPFD QKELELIIGG LDKIDLDDWK SNTRLKHCGA DSNVVRWFWQ 801 850 bmy_20018T0/1-818 AVETFDEERR ARLLQFVTGS TRVPLQGFKA LQGSTGAAGP RLFTIHLIDA BACU012115/1-725 AVETFDEERR ARLLQFVTGS TRVPLQGFKA LQGSTGAAGP RLFTIHLIDA ENSP00000354621/1-757 AVETFDEERR ARLLQFVTGS TRVPLQGFKA LQGSTGAAGP RLFTIHLIDA ENSBTAP00000041274/1-770 AVETFDEERR ARLLQFVTGS TRVPLQGFKA LQ---GAAGP RLFTIHLIDA ENSTTRP00000002810/1-738 AVETFDEERR ARLLQFVTGS TRVPLQGFKA LQGSTGAAGP RLFTIHLIDA 851 900 bmy_20018T0/1-818 NTDNLPKAHT CFNRIDIPPY ESYEKLYEKL LTAVEETCGF AVE BACU012115/1-725 NTDNLPKAHT CFNRIDIPPY ESYEKLYEKL LTAVEETCGF AVE ENSP00000354621/1-757 NTDNLPKAHT CFNRIDIPPY ESYEKLYEKL LTAVEETCGF AVE ENSBTAP00000041274/1-770 NTDNLPKAHT CFNRIDIPPY ESYEKLYEKL LTAVEETCGF AVE ENSTTRP00000002810/1-738 NTDNLPKAHT CFNRIDIPPY ESYEKLYEKL LTAVEETCGF AVE