KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:51:43 2014 Check: 00 .. Name: ENSBTAP00000041322/1-354 Len: 392 Check: 3201 Weight: 1.00 Name: ENSP00000372955/1-354 Len: 392 Check: 2126 Weight: 1.00 Name: bmy_09951T0/1-350 Len: 392 Check: 5424 Weight: 1.00 Name: ENSTTRP00000014468/1-350 Len: 392 Check: 4696 Weight: 1.00 // 1 50 ENSBTAP00000041322/1-354 MCGRTSCHLP REVLARACAY RDRQGHQRLP EWRDPDRYCP SYNKSPRSSS ENSP00000372955/1-354 MCGRTSCHLP RDVLTRACAY QDRRGQQRLP EWRDPDKYCP SYNKSPQSNS bmy_09951T0/1-350 MCGRTSCHLP KEVLARACAY RDRQGQRRLP EWRDPDRYCP SYNKSPQSSS ENSTTRP00000014468/1-350 ---RTSCHLS KEVLARACAY RDRQGQRRLP EWRDPDRYCP SYNKSPQSSS 51 100 ENSBTAP00000041322/1-354 PVLLSRLHLE KDADSSERII APMRWGLVPY WFKEADLSKL QINTSNCRSD ENSP00000372955/1-354 PVLLSRLHFE KDADSSERII APMRWGLVPS WFKESDPSKL QFNTTNCRSD bmy_09951T0/1-350 PVLLSRLHVE KGADSSERII APMRWGLVPX WFKEADPSKL QFNTSNCRSD ENSTTRP00000014468/1-350 PVLLSRLHVE KGADSSERVI APMRWGLVPS WFKEADPSKL QFNTSNCRSD 101 150 ENSBTAP00000041322/1-354 TIMEKRSFKV PLVKGRRCVV LADGFYEWQR RQATSHRQPY FIYFPQVKPE ENSP00000372955/1-354 TVMEKRSFKV PLGKGRRCVV LADGFYEWQR CQGTNQRQPY FIYFPQIKTE bmy_09951T0/1-350 TIMEKRSF-- ---------- ---------- ---------- ---------- ENSTTRP00000014468/1-350 TIMEKRSFKV PLGKGRRCVV LADGFYEWQR CQGTNKTQPY FIYFPQIKTE 151 200 ENSBTAP00000041322/1-354 KSEQVGAVAS PEDWEKVWDN WRPLTMAGIF DCWEPPAGGD CLYSYSIITV ENSP00000372955/1-354 KSGSIGAADS PENWEKVWDN WRLLTMAGIF DCWEPPEGGD VLYSYTIITV bmy_09951T0/1-350 KSESMGAADG PEDWEKIWDN WRPLTMAGLF DCWEPPEGGD CLYSYTIITV ENSTTRP00000014468/1-350 KSESMGAADG PEDWEKVWDN WRPLTMAGLF DCWEPPEGGD CLYSYTIITV 201 250 ENSBTAP00000041322/1-354 DSCKVLNDIH N--------- ---------- ---------- ---------R ENSP00000372955/1-354 DSCKGLSDIH H--------- ---------- ---------- ---------R bmy_09951T0/1-350 DSCKGLNGIH HRQVTLLMPG SKRIQGRVSD QASPRPPLLL PTTVFTARAR ENSTTRP00000014468/1-350 DSCKGLNDIH H--------- ---------- ---------- ---------R 251 300 ENSBTAP00000041322/1-354 MPAILDGEEA VSKWLDFGEV PAQEALKLIR PTENIAFHRV SSVVNSSWNN ENSP00000372955/1-354 MPAILDGEEA VSKWLDFGEV STQEALKLIH PTENITFHAV SSVVNNSRNN bmy_09951T0/1-350 MPAILDGEEA VSMWLDFGEV SAQEALKLIH PTENITFHPV SSVVNNSRNN ENSTTRP00000014468/1-350 MPAILDGEEA VSKWLDFGEV SAQEALKLIH PTENITFHAV SSVVNNSRNN 301 350 ENSBTAP00000041322/1-354 APECVLPLHL LAGKELTVSA SSQKMLQWLA TKSPKKEEPR TPQKAEPDVP ENSP00000372955/1-354 TPECLAPVDL VVKKELRASG SSQRMLQWLA TKSPKKEDSK TPQKEESDVP bmy_09951T0/1-350 TPECLLPLRS LGRKELKASG SSQKMLQWLA TKSPKKQDTK TPQKAESDVP ENSTTRP00000014468/1-350 TPECLLPVDS LVKKEPKASG SSQKMLQWLA TKSPKKEDTK APQKAESDVP 351 400 ENSBTAP00000041322/1-354 QWSSQFLQKS PVTPKRGSAG LLERWLKQGQ EEEPVAKRPH TQ ENSP00000372955/1-354 QWSSQFLQKS PLPTKRGTAG LLEQWLKREK EEEPVAKRPY SQ bmy_09951T0/1-350 QWSSQFLKKS PVSPKRGGAD LLKRWLKQEK EEEPVAKRPH TQ ENSTTRP00000014468/1-350 QWSSQFLKKS PLSHRRG-AD LLERWLKREK EEEPVAKRPH TQ