KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:44 2014 Check: 00 .. Name: ENSTTRP00000001976/1-964 Len: 979 Check: 4705 Weight: 1.00 Name: ENSBTAP00000041323/1-960 Len: 979 Check: 5416 Weight: 1.00 Name: ENSP00000382004/1-968 Len: 979 Check: 7820 Weight: 1.00 Name: bmy_17552T0/1-931 Len: 979 Check: 5242 Weight: 1.00 Name: BACU017250/1-969 Len: 979 Check: 3931 Weight: 1.00 // 1 50 ENSTTRP00000001976/1-964 MDDSEVESTA SILASVKEQE AQFEKLTRAL EEERRHVSAQ LERVRVSPQD ENSBTAP00000041323/1-960 MDDSEVESPA SILASVKEQE AQFEKLTRAL EEERRHVSAQ LERVRVSPQD ENSP00000382004/1-968 MDDSEVESTA SILASVKEQE AQFEKLTRAL EEERRHVSAQ LERVRVSPQD bmy_17552T0/1-931 MDDSEVESTA SILASVKEQE AQFEKLTRAL EEERRHVSAQ LERVRVSPQD BACU017250/1-969 MDDSEVESTA SILASVKEQE AQFEKLTRAL EEERRHVSAQ LERVRVSPQD 51 100 ENSTTRP00000001976/1-964 ANPLMANGTL TRRHQNGRFV GDVDLERQKF SDLKLNGPQD HSHLLYSTIP ENSBTAP00000041323/1-960 ASPLLANGTL TRRHQNGRFV GDADLERQKF SDLSLNGPQD HSHLLYSTVP ENSP00000382004/1-968 ANPLMANGTL TRRHQNGRFV GDADLERQKF SDLKLNGPQD HSHLLYSTIP bmy_17552T0/1-931 ANPLMANGTL TRRHQNGRFA GDVDLERQKF SDLKLNGPQD HSHLLYSTIP BACU017250/1-969 ANPLMANGTL TRRHQNGRFV GDVDLERQKF SDLKLNGPQD HSHLLYSTIP 101 150 ENSTTRP00000001976/1-964 RMQEPGQIVE TYTEEDPEGA MSVVSVETSD DGTTRRTETT VKKVVKTVTT ENSBTAP00000041323/1-960 RMQEPGQIVE TYTEEDPEGA MSVVSVETSD DGTTRRTETT VKKVVKTVTT ENSP00000382004/1-968 RMQEPGQIVE TYTEEDPEGA MSVVSVETSD DGTTRRTETT VKKVVKTVTT bmy_17552T0/1-931 RMQEPGQIVE TYTEEDPEGA MSVVSVETSD DGTTRRTETT VKKVVKTVTT BACU017250/1-969 RMQEPGQIVE TYTEEDPEGA MSVVSVETSD DGTTRRTETT VKKVVKTVTT 151 200 ENSTTRP00000001976/1-964 RTVQPVPMGP DGLPVDASSV SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041323/1-960 RTVQPVPMGP DGLPVDASAV SNSYIQTLGR DFRKNGNGGP GPYVGQAGTA ENSP00000382004/1-968 RTVQPVAMGP DGLPVDASSV SNNYIQTLGR DFRKNGNGGP GPYVGQAGTA bmy_17552T0/1-931 RTVQPVSMGP DGLPADASSV SNSYIQTLGR DFRKNGNGGP GPYVGQAGTA BACU017250/1-969 RTVQPVSMGP DGLPADASSV SNSYIQTLGR DFRKNGNGGP GPYVGQAGTA 201 250 ENSTTRP00000001976/1-964 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041323/1-960 TLPRNFHYPP DGYSRHYEDG YPGSGDNYGS LSRVTRIEER YRPSMEGYRA ENSP00000382004/1-968 TLPRNFHYPP DGYSRHYEDG YPGGSDNYGS LSRVTRIEER YRPSMEGYRA bmy_17552T0/1-931 TLPRNFHYPP DGYSRHYEDG YPSSSDNYGS LSRVTRIEER YRPSMEGYRA BACU017250/1-969 TLPRNFHYPP DGYSRHYEDG YPSSSDNYGS LSRVTRIEER YRPSMEGYRA 251 300 ENSTTRP00000001976/1-964 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041323/1-960 PSRQDVYGPQ PQVRVGGSSV DLHRFHPEPY GLEDDQRSMG YDDVDYGMMS ENSP00000382004/1-968 PSRQDVYGPQ PQVRVGGSSV DLHRFHPEPY GLEDDQRSMG YDDLDYGMMS bmy_17552T0/1-931 PSRQDVYGPQ PQVRVGGSSV DLHRFHPEPY GLEDDQRSMG YDDVDYGMMS BACU017250/1-969 PSRQDVYGPQ PQVRVGGSSV DLHRFHPEPY GLEDDQRSMG YDDVDYGMMS 301 350 ENSTTRP00000001976/1-964 XXXXXXXXXX XXXXXXXXXS YEDMIGEEVP SDQYYWAPLA QHERGSLASL ENSBTAP00000041323/1-960 DYGTGRRTGT PSDPRRRLRS YEDMIGEEVP SDQYYWAPLA QHERGSLASL ENSP00000382004/1-968 DYGTARRTGT PSDPRRRLRS YEDMIGEEVP SDQYYWAPLA QHERGSLASL bmy_17552T0/1-931 DYGTGRRTGT PSDPRRRLRS YEDMIGEEVP SDQYYWAPLA QHERGSLASL BACU017250/1-969 DYGTGRRTGT PSDPRRRLRS YEDMIGEEVP SDQYYWAPLA QHERGSLASL 351 400 ENSTTRP00000001976/1-964 DSLRKGGPPP PNWRQPELPE VIAMLGFRLD AVKSNAAAYL QHLCYRNDKV ENSBTAP00000041323/1-960 DSLRKGGPPP PNWRQPELPE VIAMLGFRLD AVKSNAAAYL QHLCYRNDKV ENSP00000382004/1-968 DSLRKGGPPP PNWRQPELPE VIAMLGFRLD AVKSNAAAYL QHLCYRNDKV bmy_17552T0/1-931 DSLRKGGPPP PNWRQPELPE VIAMLGFRLD AVKSNAAAYL QHLCYRNDKV BACU017250/1-969 DSLRKGGPPP PNWRQPELPE VIAMLGFRLD AVKSNAAAYL QHLCYRNDKV 401 450 ENSTTRP00000001976/1-964 KTDVRKLKGI PVLVGLLDHP KKEVHLGACG ALKNISFGRD QDNKIAIKNC ENSBTAP00000041323/1-960 KTDVRKLKGV PVLVGLLDHP KKEVHLGACG ALKNISFGRD QENKIAIKNC ENSP00000382004/1-968 KTDVRKLKGI PVLVGLLDHP KKEVHLGACG ALKNISFGRD QDNKIAIKNC bmy_17552T0/1-931 KTDVRKLKGI PVLVGLLDHP KKEVHLGACG ALKNISFGRD QDNKIAIKNC BACU017250/1-969 KTDVRKLKGI PALVGLLDHP KKEVHLGACG ALKNLSFGRD QDNKIAIKNC 451 500 ENSTTRP00000001976/1-964 DGVPALVRLL RKARDMDLTE VITGTLWNLS SHDSIKMEIV DHALHALTDE ENSBTAP00000041323/1-960 DGVPALVRLL RKARDMDLTE VITGTLWNLS SHDSIKMEIV DHALHALTDE ENSP00000382004/1-968 DGVPALVRLL RKARDMDLTE VITGTLWNLS SHDSIKMEIV DHALHALTDE bmy_17552T0/1-931 DGVPALVRLL RKARDMDLTE VITGTLWNLS SHDSIKMEIV DHALHALTDE BACU017250/1-969 DGVPALVRLL RKARDMDLTE VITGTLWNLS SHDSIKMEIV DHALHALTDE 501 550 ENSTTRP00000001976/1-964 VIIPHSGWER EPSEDCKPRH IEWESVLTNT AGCLRNVSSE RSEARRKLRE ENSBTAP00000041323/1-960 VIIPHSGWER EPSEDCKPRH VEWESVLTNT AGCLRNVSSE RSEARRKLRE ENSP00000382004/1-968 VIIPHSGWER EPNEDCKPRH IEWESVLTNT AGCLRNVSSE RSEARRKLRE bmy_17552T0/1-931 VIIPHSGWER EPNEDCKPRH IEWESVLTNT AGCLRNVSSE RSEARRKLRE BACU017250/1-969 VIIPHSGWER EPNEDCKPRH IEWESVLTNT AGCLRNVSSE RSEARRKLRE 551 600 ENSTTRP00000001976/1-964 CDGLVDALIF IVQAEIGQKD SDSKLVENCV CLLRNLSYQV HREIPQAERY ENSBTAP00000041323/1-960 CDGLVDALIF IVQAEIGQKD SDSKLVENCV CLLRNLSYQV HREIPQAERY ENSP00000382004/1-968 CDGLVDALIF IVQAEIGQKD SDSKLVENCV CLLRNLSYQV HREIPQAERY bmy_17552T0/1-931 CDGLVDALIF IVQAEIGQKD SDSKLVENCV CLLRNLSYQV HREIPQAERY BACU017250/1-969 CDGLVDALIF IVQAEIGQKD SDSKLVENCV CLLRNLSYQV HREIPQAERY 601 650 ENSTTRP00000001976/1-964 QEAPPNVANS TGPHAASCFG AKKGKDEWFS RGKKPTEDPI NDTVDFPKRT ENSBTAP00000041323/1-960 QEAPPSVANS TGPHAASCFG AKKGK----- -GKKPTEDPT NDTVDFPKRT ENSP00000382004/1-968 QEAAPNVANN TGPHAASCFG AKKGKDEWFS RGKKPIEDPA NDTVDFPKRT bmy_17552T0/1-931 QEAPPNVANX TGPHAASCFG AKKGK----- -GKKPTEDST NDTVDFPKRT BACU017250/1-969 QEAPPNVANN TGPHAASCFG AKKGK----- -GKKPTEDPT NDTVDFPKRT 651 700 ENSTTRP00000001976/1-964 SPARGYELLF QPEVVRIYIS LLKESKNPAI LEASAGAIQN LCAGRWTYGR ENSBTAP00000041323/1-960 SPARGYELLF QPEVIRIYIS LLKESKNPAI LEASAGAIQN LCAGRWTYGR ENSP00000382004/1-968 SPARGYELLF QPEVVRIYIS LLKESKTPAI LEASAGAIQN LCAGRWTYGR bmy_17552T0/1-931 SPARGYELLF QPEVVRIYIS LLKESKNPAI LEASAGAIQN LCAGRWTYGR BACU017250/1-969 SPARGYELLF QPEVVRIYIS LLKESKNPAI LEASAGAIQN LCAGRWTYGR 701 750 ENSTTRP00000001976/1-964 YIRSALRQEK ALSAIADLLT NEHERVVKAA SGALRNLAVD ARNKELIGKH ENSBTAP00000041323/1-960 YIRSALRQEK ALSAIADLLT NEHERVVKAA SGALRNLAVD ARNKELIGKH ENSP00000382004/1-968 YIRSALRQEK ALSAIADLLT NEHERVVKAA SGALRNLAVD ARNKELIGKH bmy_17552T0/1-931 YIRSALR--- ---------- ---------- ---------- --------KH BACU017250/1-969 YIRSALRQEK ALSAIADLLT NEHERVVKAA SGALRNLAVD ARNKELIGKH 751 800 ENSTTRP00000001976/1-964 AIPNLVKNLP GGQQSSSQNF SEDTVVSVLN TINEVIAENL EAAKKLRETQ ENSBTAP00000041323/1-960 AIPNLVKNLP GGQQSSSQNF SEDTVVSILN TINEVIAENL EAAKKLRETQ ENSP00000382004/1-968 AIPNLVKNLP GGQQNSSWNF SEDTVISILN TINEVIAENL EAAKKLRETQ bmy_17552T0/1-931 AIPNLVKNLP GGQQSSSQNF SEDTVVSVLN TINEVIAENL EAAKKLRETQ BACU017250/1-969 AIPNLVKNLP GGQQSSSQNF SEDTVVSVLN TINEVIAENL EAAKKLRETQ 801 850 ENSTTRP00000001976/1-964 GIEKLVLINK SGNRSEKEVR AAALVLQTIW GYKELRKPLE KEGWKKSDFQ ENSBTAP00000041323/1-960 GIEKLVLINK SGNRSEKEVR AAALVLQTIW GYKELRKPLE KEGWKKSDFQ ENSP00000382004/1-968 GIEKLVLINK SGNRSEKEVR AAALVLQTIW GYKELRKPLE KEGWKKSDFQ bmy_17552T0/1-931 GIEKLVLINK SGNRSEKEVR AAALVLQTIW GYKELRKPLE KEGWKKSDFQ BACU017250/1-969 GIEKLVLINK SGNRSEKEVR AAALVLQTIW GYKELRKPLE KEGWKKSDFQ 851 900 ENSTTRP00000001976/1-964 VNLNNASRSQ SSHSYDDSTL PLIDRNQKSD KKPDREEIQM SSMGSNTKSL ENSBTAP00000041323/1-960 VSLNNASRSQ SSHSYDDSTL PLIDRSQRSD KKPDREEIQM SSMGSNTKSL ENSP00000382004/1-968 VNLNNASRSQ SSHSYDDSTL PLIDRNQKSD KKPDREEIQM SNMGSNTKSL bmy_17552T0/1-931 VNLNNASRSQ SSHSYDDSTL PLIDRNQKSD KKPDREEIQM SSMGSNTKSL BACU017250/1-969 VNLNNASRSQ STHSYDDSTL PLIDRNQKSD KKPDREEIQM SSMGSNTKSL 901 950 ENSTTRP00000001976/1-964 DNNYSTLNER GDHSRTLDRS GDLGEMEPLK G-TPLMQDEG QESLEEEVDV ENSBTAP00000041323/1-960 DNNYSTLNER GDHNRTLDRP GDLGEMEPLK G-APLMQDEG QESLEEELDV ENSP00000382004/1-968 DNNYSTPNER GDHNRTLDRS GDLGDMEPLK GTTPLMQDEG QESLEEELDV bmy_17552T0/1-931 DNNYSTLNER GDHNRTLDRS GDLGEMEPLK G-TPLMQDEG QESLEZEVDV BACU017250/1-969 DNNYSTLNER GDHNRTLDRS GDLGEMEPLK G-TPLMQDEG QESLEEEVDV 951 1000 ENSTTRP00000001976/1-964 LVLDDEGDQM SY-PPM---- --------- ENSBTAP00000041323/1-960 LFLDE-GEPM SC-PAMQKI- --------- ENSP00000382004/1-968 LVLDDEGGQV SY-PSMQKI- --------- bmy_17552T0/1-931 LVLDDEGDQM SYRPHAEDLA PLSPLHLGL BACU017250/1-969 LVLDDEGDQM SYRPHGMSFS HPQDHP---