KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:51:44 2014 Check: 00 .. Name: ENSBTAP00000041324/1-240 Len: 301 Check: 5721 Weight: 1.00 Name: ENSTTRP00000003112/1-298 Len: 301 Check: 8147 Weight: 1.00 Name: bmy_08097T0/1-245 Len: 301 Check: 1271 Weight: 1.00 Name: ENSP00000378851/1-245 Len: 301 Check: 2008 Weight: 1.00 // 1 50 ENSBTAP00000041324/1-240 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003112/1-298 ARRFLFRRQE EPRAAGAAAA PTPAAVGRAA LSSSAISPSD PSPLLDLAAG bmy_08097T0/1-245 ---------- ---------- ---------- ---------- ---------- ENSP00000378851/1-245 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000041324/1-240 ------MSDE FSLADALPEN SPAKTSAVSN TKPGQPPQGW PGSNPWNNPS ENSTTRP00000003112/1-298 SDLAGXXXXX XXLADALPEH SPAKTSAVSN TKPGQPPQGW PGSNPWNNPS bmy_08097T0/1-245 ------MSDE FSLADALPEH SPAKTSAVSN TKPGQPPQGW PGSNPWNNPS ENSP00000378851/1-245 ------MSDE FSLADALPEH SPAKTSAVSN TKPGQPPQGW PGSNPWNNPS 101 150 ENSBTAP00000041324/1-240 APPAVPSGLP PSATPSPVPF GPTPTGMYPS VPPTGPPPGP PAPFPPSGPS ENSTTRP00000003112/1-298 APPSVPSGLP PSATPSTVPF GPAPTGMYPS VPPTGPPPGP PAPFPPSGPS bmy_08097T0/1-245 APPSVPSGLP PSATPSTVPF GPAPTGMYPS VPPTGPPPGP PAPFPPSGPS ENSP00000378851/1-245 APSSVPSGLP PSATPSTVPF GPAPTGMYPS VPPTGPPPGP PAPFPPSGPS 151 200 ENSBTAP00000041324/1-240 CPPPGGPY-- ---PGPGPTG PYPTPNMPFP ELPRPYGAPT DPAAAGPLGP ENSTTRP00000003112/1-298 CPPPGGPYPA PTVPGPGPTG PYPTPNMPFP ELPRPYGAPT DPAAAGPLGP bmy_08097T0/1-245 CPPPGGPYPA PTVPGPGPTG PYPTPNMPFP ELPRPYGAPT DPAAAGPLGP ENSP00000378851/1-245 CPPPGGPYPA PTVPGPGPTG PYPTPNMPFP ELPRPYGAPT DPAAAGPLGP 201 250 ENSBTAP00000041324/1-240 WGSMSSGPWA PGMGGQYPTP NMPYPSPGPY PAPPPPQAPG AAPPVPWGTV ENSTTRP00000003112/1-298 WGSMSSGPWA PGMGGQYPTP NMPYPSPGPY PAPPPPQAPG AAPPVPWGTV bmy_08097T0/1-245 WGSMSSGPWA PGMGGQYPTP NMPYPSPGPY PAPPPPQAPG AAPPVPWGTV ENSP00000378851/1-245 WGSMSSGPWA PGMGGQYPTP NMPYPSPGPY PAPPPPQAPG AAPPVPWGTV 251 300 ENSBTAP00000041324/1-240 PPGAWGPPAP YPAPAGSYPT PGLYPTPNNP FQVPSGPSGA PPMPGGPHSY ENSTTRP00000003112/1-298 PPGAWGPPAP YPAPAGSYPT PGLYPSPNNP FQVPSGPSGA PPMPGGPH-- bmy_08097T0/1-245 PPGAWGPPAP YPAPAGSYPT PGLYPSPSNP FQVPSGPSGA PPMPGGPHVS ENSP00000378851/1-245 PPGAWGPPAP YPAPTGSYPT PGLYPTPSNP FQVPSGPSGA PPMPGGPHSY 301 350 ENSBTAP00000041324/1-240 H ENSTTRP00000003112/1-298 - bmy_08097T0/1-245 V ENSP00000378851/1-245 H