KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:51:45 2014  Check: 00 ..

 Name: ENSP00000437409/1-118     Len:    217  Check:  3067  Weight:  1.00
 Name: ENSBTAP00000041340/1-217  Len:    217  Check:  1074  Weight:  1.00
 Name: bmy_17034T0/1-217         Len:    217  Check:  9304  Weight:  1.00
 Name: ENSTTRP00000003734/1-216  Len:    217  Check:  5763  Weight:  1.00

//


                          1                                                   50
ENSP00000437409/1-118     MESVALYSFQ ATESDELAFN KGDTLKILNM EDDQNWYKAE LRGVEGFIPK 
ENSBTAP00000041340/1-217  MESVALYSFQ ATESDELAFN KGDTLKILNM EDDQNWYKAE LRGAEGFVPK 
bmy_17034T0/1-217         MESVALYSFQ ATESDELAFN KGDTLKILNM EDDQNWYKAE LRGAEGFVPK 
ENSTTRP00000003734/1-216  MESVALYSFQ ATESDELAFN KGDTLKILNM EDDQNWYKAE LRGAEGFVPK 


                          51                                                 100
ENSP00000437409/1-118     NYIRVKPHPW YSGRISRQLA EEILMKRNHL GAFLIRESES SPGEFSVSVN 
ENSBTAP00000041340/1-217  NYIRLKPHPW YSGRISRQLA EEILMKRNHQ GAFLIRESES SPGEFSVSVN 
bmy_17034T0/1-217         NYIRVKPHPW YSGRISRQLA EEILMKRNHP GAFLIRESES SPGEFSVSVN 
ENSTTRP00000003734/1-216  NYIHVKPHPW YSGRISRQLA EEILMKRNHP GAFLIRESES SPGEFSVSVN 


                          101                                                150
ENSP00000437409/1-118     NRAQ------ ---------- ---------- ---------- ---------- 
ENSBTAP00000041340/1-217  YGDQVQHFKV LRDPSGKYYL WEEKFNSLNE LVAFYRTTTI AKKRQVFLQD 
bmy_17034T0/1-217         YGDQVQHFKV LREASGKYYL WEEKFNSLNE LVAFYRTSTI AKKRQVFLRD 
ENSTTRP00000003734/1-216  YGDQVQHFKV LREASGKYYL WEEKFNSLNE LVAFYRTRTI A-KRQVFLRD 


                          151                                                200
ENSP00000437409/1-118     ---------- ---------- ---------- RG-------- --PC-LGPKS 
ENSBTAP00000041340/1-217  EEPLPKPPRA CFAQAQFDFS AQDPSQLSFR RGDIIEVLER LDPSWWRGRL 
bmy_17034T0/1-217         EEPLAKPPRA CFAQAQFDFS AQDPSQLSFR RGDIIEVLER LDPCWWRGRL 
ENSTTRP00000003734/1-216  EEPLFKPPRA CFAQAQFDFS AQDPSQLSFR RGDIIEVLER LDPCWWRGRL 


                          201                                                250
ENSP00000437409/1-118     HSRLG----- ------- 
ENSBTAP00000041340/1-217  SGRIGFFPRS YVQPVHM 
bmy_17034T0/1-217         CGRIGFFPRS YVQPVHL 
ENSTTRP00000003734/1-216  CGRIGFFPRS YVQPVHL