KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:46 2014 Check: 00 .. Name: ENSTTRP00000000793/1-895 Len: 1025 Check: 7049 Weight: 1.00 Name: bmy_12898T0/1-905 Len: 1025 Check: 9307 Weight: 1.00 Name: BACU000710/1-258 Len: 1025 Check: 1431 Weight: 1.00 Name: ENSP00000475005/1-923 Len: 1025 Check: 9575 Weight: 1.00 Name: ENSBTAP00000041356/1-852 Len: 1025 Check: 6484 Weight: 1.00 // 1 50 ENSTTRP00000000793/1-895 --------MV RQMGGGWGRG QLGRGSVPLL PVPLPPLSPP PGRGPGGGRV bmy_12898T0/1-905 ---------- ---LGRWG-- DLERGSVPLL PGPLPPLPPP PGRGPGGGRV BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 MVSRMGWGGR RRRLGRWG-- DLGPGSVPLL PMPLPPPPPP SCRGPGGGRI ENSBTAP00000041356/1-852 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000793/1-895 SIFSLAPAPH TKSTPSSAPP SAPGPPYPAV QAPGASQLRY STLPTPATPA bmy_12898T0/1-905 SIFSLAPAPH TKSTPSSAPS SAPGPPYPAV QAPGASQPRS STLPTPATPA BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 SIFSLSPAPH TRSSPSSFSP PTAGPPCSVL QGTGASQSCH SALPIPATPP ENSBTAP00000041356/1-852 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000793/1-895 T-ARPAMMPI SAPHSWGSHP AP-------- APCRCPQDPP GLRRGPLIPE bmy_12898T0/1-905 TQPRPAMTPI SAPPSWGSHS AP-------- PPRRCPQDPP GLRKGPLIPE BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 TQAQPAMTPA SASPSWGSHS TPPLAPATPT PSQQCPQDSP GLRVGPLIPE ENSBTAP00000041356/1-852 ---------- ---------- ---------- ---------- ---------E 151 200 ENSTTRP00000000793/1-895 QDSERLEDCD PEGSQDSALH GEGQQPLLHV PEGLRGSWHH VQNLDSFFTK bmy_12898T0/1-905 QVYERLDDCD PEGSQDSALH GEEQQPLLHV PEGLRGSWHH VQNLDSFFTK BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 QDYERLEDCD PEGSQDSPIH GEEQQPLLHV PEGLRGSWHH IQNLDSFFTK ENSBTAP00000041356/1-852 QDYEQLEDGD PEGSQDSPLH GEEQQPLLHV PEGLRGSWHH IQNLDSFFTK 201 250 ENSTTRP00000000793/1-895 MYSY----HQ RSGFACILLE DVFQLGRFIF IVTFTTFLLR CVDYSVLFAN bmy_12898T0/1-905 ISFCALPGRR GTGGRETGVQ WVGDLG---- -AEESASSGK AHHAAGLILD BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 IYSY----HQ RNGFACILLE DVFQLGQFIF IVTFTTFLLR CVDYNVLFAN ENSBTAP00000041356/1-852 IYSY----HQ RNGFTCILLE DVFQLGQFIF IVTFTTFLLR CVDYSVLFAN 251 300 ENSTTRP00000000793/1-895 QPKNRTRPGS LHSKVTLSDA NLPSSQCAQR IRS---LVFL LILAAAVWLF bmy_12898T0/1-905 ALPHLQLPPE EWLCLYPAGG CLPAG-CAQR IRSSPLLVFL LILAAAFWLF BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 QPSNHTRPGP FHSKVTLSDA ILPSAQCAER IRSSPLLVLL LVLAAGFWLV ENSBTAP00000041356/1-852 QLSNRTRPEP LHSKVTLSDA VLPSSQCAQR ICSSPLLVFL LILAAAFWLF 301 350 ENSTTRP00000000793/1-895 QLLCSVCKLF SYWDIQVFSR EALHIPPEEL SSVPWAEVQS RLLALQRSGG bmy_12898T0/1-905 QLLRSVCKLF SYWDIQVFYR EALXIPPEEL SSVPWAEVQS RLLALQRSGV BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 QLLRSVCNLF SYWDIQVFYR EALHIPPEEL SSVPWAEVQS RLLALQRSGG ENSBTAP00000041356/1-852 QLLRSVCNLF SYWDIQVFYR EALHIPPEEL SSVPWAEVQS RLLALQRSGG 351 400 ENSTTRP00000000793/1-895 LCGQPRPLTE LDAHHRILRY TNYQVALASK GLLPARRAVP RGGRAAFLSC bmy_12898T0/1-905 LCVQPRPLTE LDVHHRILRY TNYQVALANK GLLPARCAVP WGGSAAFLSR BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 LCVQPRPLTE LDIHHRILRY TNYQVALANK GLLPARCPLP WGGSAAFLSR ENSBTAP00000041356/1-852 LCVQPRPLTE LDVHHRILRY TNYQVALANK GLLPARAALP WGGGAAFLSR 401 450 ENSTTRP00000000793/1-895 GLAPN-DLLL SRGPFSFFRG G-ELPDAYKR SDRRAALAAR WRRTVLLLAA bmy_12898T0/1-905 GLALNVDLLL FRGPFSFFRG GWELPDAYKS SDRRAALAAR WRRTVLLLAA BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 GLALNVDLLL FRGPFSLFRG GWELPHAYKR SDQRGALAAR WGRTVLLLAA ENSBTAP00000041356/1-852 GLALNVDLLL FRGPFSLFRG GWELPDSYKR GDRRAALAAR WRRTVLLLAA 451 500 ENSTTRP00000000793/1-895 VNLALSPLVL AWQVLHALYS RAELLRREPG ALATRRWSRL ARQQLRHFNE bmy_12898T0/1-905 VNLALGPLVL AWQLLHAFYS RAEVLRREPG TLGTRRWSRL ARLQLRHFNE BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 LNLALSPLVL AWQVLHVFYS HVELLRREPG ALGARGWSRL ARLQLRHFNE ENSBTAP00000041356/1-852 ANLALSPLVL AWQVLQAFYS HAELLRREPG ALGTRRWSRL ARLQLRHFNE 501 550 ENSTTRP00000000793/1-895 LPHELRARLA RASRPAAAFL RA---PAPVL ALLARQLVFF AGALFAALLV bmy_12898T0/1-905 LPHELRARLA RAYRPAAAFL RAAAPPAPLL ALLARQLVFF AGALFAALLV BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 LPHELRARLA RAYRPAAAFL RTAAPPAPLR TLLARQLVFF AGALFAALLV ENSBTAP00000041356/1-852 LPHELRARLA RAYRPAAAFL RAAAPPAPLL ALLARQLVFF AGAPLAALLV 551 600 ENSTTRP00000000793/1-895 LTVYYKDVLY VEHVLTAMTA LGIVA-VARS FIPGGQGQGR SPQILLPAAL bmy_12898T0/1-905 LTVYDEDVLS VEHVLTAMTA LGIVATVARS FIPGEQGQGR PPQILLPAAL BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 LTVYDEDVLA VEHVLTAMTA LGVTATVARS FIPEEQCQGR APQLLLQTAL ENSBTAP00000041356/1-852 LTVYDEDVLA VEHVLTAMTA LGIAATVARS FIPDEQGQGR SPQLLLQAAL 601 650 ENSTTRP00000000793/1-895 AHTHYLPEET GPAGRTSSYR QMARLLQHRA VSLTEELLSP VLAPLFLRFW bmy_12898T0/1-905 AHMHYLPEET GPAGRTSAYR QMARLLQYRA VSLAEELLSP LLTPLFLLFW BACU000710/1-258 --MHYLPEET GPAGRTCAYR QMARLLQYRA VSLAEELLSP LLTPLFLLFW ENSP00000475005/1-923 AHMHYLPEEP GPGGRDRAYR QMAQLLQYRA VSLLEELLSP LLTPLFLLFW ENSBTAP00000041356/1-852 AHMHYLPEET GPAGRTSSYR QMARLLQYRA VSLVEELLSP VLTPLFLIFW 651 700 ENSTTRP00000000793/1-895 FRPGALEIID FFRHFAVDVA AVGDICSFAL MDVKRHGHPQ GIPEGQTEAS bmy_12898T0/1-905 FRPRALEIID FFRHFTVDVA GVGDICSFAL MDVKRHGHPQ ---------- BACU000710/1-258 FRPRALEIID FFRHFTVDVA GVGDICSFAL MDVKRHGHPQ WLSEGQTEAS ENSP00000475005/1-923 FRPRALEIID FFHHFTVDVA GVGDICSFAL MDVKRHGHPQ WLSAGQTEAS ENSBTAP00000041356/1-852 FRPRALEIID FFRHFTVDVA GVGDICSFAL MDVKRHGHPQ WLSEGQTEAS 701 750 ENSTTRP00000000793/1-895 LSERAEDGKT ELSLMRFSLV HPQRCPPSHS SKFLGHLRGR VQQDAAAWG- bmy_12898T0/1-905 ---RAEDGKT ELSLMRFSLL HPQWCPPGHS SKFLGHLRGR VQQDAAAWG- BACU000710/1-258 LSERAEDGKT ELSLMRFSLL HPQWCPPGHS SKFLGHLRGR VQQDAAAWD- ENSP00000475005/1-923 LSQRAEDGKT ELSLMRFSLA HPLWRPPGHS SKFLGHLWGR VQQDAAAWG- ENSBTAP00000041356/1-852 LSQRAEDGKT ELSLMRFSLV HPQWRPPGHS SKFLGHLRGR VQQDAASCSL 751 800 ENSTTRP00000000793/1-895 ---------A SSVRSPPSPG ILSSSSSPL- ---------- --------PE bmy_12898T0/1-905 ---------A SSVRSTPSPG ILSNSASPLT SASPPVLSSD SLFSCAQQEA BACU000710/1-258 ---------A SSVRSPLSPG ILSNSASPL- ---------- --------EA ENSP00000475005/1-923 ---------A TSARGPSTPG VLSNCTSPL- ---------- --------PE ENSBTAP00000041356/1-852 VPSALLPSQT SSLPSVLSPD PLSSRSQP-- ---------- --------EA 801 850 ENSTTRP00000000793/1-895 FPANLSMQPL VPPQDLSPVV PCPAAATASL LASISRMTQD ---------- bmy_12898T0/1-905 FPANLSMQPL VPPQDLSPIV PCPAAATASL LASISRMTQD ---------- BACU000710/1-258 FPANLSMQPL GPPQDLSPIV PCPAAATASL LASISRMTQD ---------- ENSP00000475005/1-923 FLANLFVHPL LPPRDLSPTA PCPAAATASL LASISRIAQD ---------- ENSBTAP00000041356/1-852 FLANLLVQPL RPPQDLSPTA PCPAAATASL LASLSRITQD SRRRGTGVGG 851 900 ENSTTRP00000000793/1-895 -------SSC VSPGGSGGQK LAQLPELVS- --SLHTIYLH QLHRQ-QQQE bmy_12898T0/1-905 -------SSC VSPGGVGGQK LAQLPELASA EMSLHAIYLH QLHWQ-QQQE BACU000710/1-258 -------SSC VSPGGTGGQK LAQLPELASA EMSLHSIYLP QVSRGVPERE ENSP00000475005/1-923 -------PSS VSPGGTGGQK LAQLPELASA EMSLHVIYLH QLHQQQQQQE ENSBTAP00000041356/1-852 DVEGALCSSC VSPGGTGGQK LAQLPELASA EMSLHAIYLH QLHQQQQQQE 901 950 ENSTTRP00000000793/1-895 LWGEASAFSL SRPWASPPQT LSPDEEKPSW SSD--GSSPA SSPRQ----- bmy_12898T0/1-905 LWGEASPSSL SRPWSSPPQT LSPEEEKPSW SSD--GSSPA SSPRQ----- BACU000710/1-258 MRGESS---- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 PWGEAAASIL SRPCSSPSQP PSPDEEKPSW SSD--GSSPA SSPRQ----- ENSBTAP00000041356/1-852 LWGEASASPL SRAWPSPPQT LSPDEEKPCW SSDGEGSRSP QTPRRSLARL 951 1000 ENSTTRP00000000793/1-895 ----QWRTQR TQNLF-PGGF QEPTDTQKEA GQATSTD--- ---------- bmy_12898T0/1-905 ----QWRTQR TWNLF-PGGF QEPTDTQKEP GQATSAD--- ---------- BACU000710/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000475005/1-923 ----QWGTQK ARNLF-PGGF QVTTDTQKEP DRASCTD--- ---------- ENSBTAP00000041356/1-852 LALTEWAPRG SVSSHGAGGM ARAVPASRQE QGSHTGELPA LGWKPSFSRA 1001 1050 ENSTTRP00000000793/1-895 ---------- ---------- ----- bmy_12898T0/1-905 ---------- ---------- ----- BACU000710/1-258 ---------- ---------- ----- ENSP00000475005/1-923 ---------- ---------- ----- ENSBTAP00000041356/1-852 GVREEPVGQD SSIQELPPPH LVHKF