KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:56 2014 Check: 00 .. Name: ENSP00000225737/1-662 Len: 708 Check: 5289 Weight: 1.00 Name: ENSTTRP00000001592/1-650 Len: 708 Check: 1323 Weight: 1.00 Name: ENSBTAP00000041402/1-655 Len: 708 Check: 6139 Weight: 1.00 Name: BACU005243/1-637 Len: 708 Check: 8962 Weight: 1.00 Name: bmy_19854T0/1-515 Len: 708 Check: 8984 Weight: 1.00 // 1 50 ENSP00000225737/1-662 MRGAGPSPRQ SPRTLRPDPG PAMSFFRRKV KGKEQEKTSD VKSIKASISV ENSTTRP00000001592/1-650 MRGAGPYPRQ SPRALRPDPG PAMSFFRRKV KGKEQEKTSD VKSGKASISV ENSBTAP00000041402/1-655 MRGAGPSPRQ SPRALRPDPG PAMSFFRRKV KSKEQEKTPD VKSVKASISV BACU005243/1-637 ---------- ---------- --MTHWSPPV KGREQEKTSD VKSVKASVSV bmy_19854T0/1-515 MRGAGSSPRQ SPRALRPDPG PAMSFFRRKV KGKEQEKTSD VKSVKASVSV 51 100 ENSP00000225737/1-662 HSPQKSTKNH ALLEAAGPSH VAINAISANM DSFSSSRTAT LKKQPSHMEA ENSTTRP00000001592/1-650 HSPQKSTKNH ALLEAAGPSH VAINAISANM DSFSSSRTAT LKKQPSHMEA ENSBTAP00000041402/1-655 HSPQKSTKNH ALLEAAGPSH VAINAISANM DSFSSSRTAT LKKQPSHMEA BACU005243/1-637 HSPQKSTKNH ALLEAAGPSH VAINAISANM DSFSSSRTAT LKKQPSHMET bmy_19854T0/1-515 HSPQKSTKNH ALLEAAGPSH VAINAISANM DSFSSSRTAT LKKQPSHMEA 101 150 ENSP00000225737/1-662 AHFGDLGRSC LDYQTQETKS SLSKTLEQVL HDTIVLPYFI QFMELRRMEH ENSTTRP00000001592/1-650 AHFGDLGRSC LDYQTQETKS SLSKTLEQVL HDTVVLPYFI QFMELRRMEH ENSBTAP00000041402/1-655 AHFGDLGRSC LDYQTQEAKS SLSKTLEQVL HDTMVLPYFI QFMELRRMEH BACU005243/1-637 AHFGDLGRSC LDYQTPETKS SLSKTLEQVL HDTVVLPYFI QFMELRRMEH bmy_19854T0/1-515 AHFGDLG--- ---------- ---------- ---------- ---------- 151 200 ENSP00000225737/1-662 LVKFWLEAES FHSTTWSRIR AHSLNTVKQS SLAEPVSPSK KHETTASFLT ENSTTRP00000001592/1-650 LVKFWLEAES FHSTTWSRIR AHSLNTVKQS SLAEPVSPSK KHETTAAFVT ENSBTAP00000041402/1-655 LVKFWLEAES FHSTTWSRIR AHSLNTVKQS SLAEPVSPSK KPETTAAFVT BACU005243/1-637 LVKFWLEAES FHSTTWSRIR AHSLNTVKQS SLAEPVSPSK KHETTAAFVT bmy_19854T0/1-515 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000225737/1-662 DSLDKRLEDS GSAQLFMTHS EGIDLNNRTN STQNHLLLSQ ECDSAHSLRL ENSTTRP00000001592/1-650 DSLDKRVEDS SLAQL----- EGIDLNNRTS NTQNHLLLSQ ECDSAHSLHL ENSBTAP00000041402/1-655 ESLNRRLEDS GSAHL----- EGIDLNNRTS NSQNH-LLSQ ESDSAHLLHL BACU005243/1-637 DSLDKRLEDS SSAQL----- EGIDL-NRTS NTQNHLLLSQ ECDSAHSLRL bmy_19854T0/1-515 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000225737/1-662 EMARAGTHQV SMETQESSST LTVASRNSPA SPLKELSGKL MKSIEQDAVN ENSTTRP00000001592/1-650 EMARTGAHRG SVETQESSR- LIVASRNSPS SPLKELSGKL MKSIEQDAVN ENSBTAP00000041402/1-655 ETARTGTHWG SLETQESSR- LMVASRSSPS SPLKELSGKL MKSIEQDAVN BACU005243/1-637 EMARTGAHRG SVETQESSR- FIVA---SPS SPLKELSGKL MKSIEQDAVN bmy_19854T0/1-515 ---------- ---------- ---------- ---------- ---IEQDAVN 301 350 ENSP00000225737/1-662 TFTKYISPDA AKPIPITEAM RNDIIARICG EDGQVDPNCF VLAQSIVFSA ENSTTRP00000001592/1-650 TFTKYISPDA AKPIPITEAM RNDIVAKICG EDGQVDPNCF VSAQSIVFSA ENSBTAP00000041402/1-655 TFTKYISPDA AKPIPITEAM RNDIIAKICG EDGQVDPNCF VSAQSIVFSA BACU005243/1-637 TFTKYISPDA AKPIPITEAM RNDIVAKICG EDGQVDPNCF VSAQSVVFSA bmy_19854T0/1-515 TFTKYISPDA AKPIPITEAM RNDIVAKICG EDGQVDPNCF VSAQSVVFSA 351 400 ENSP00000225737/1-662 ME-------- ---------- --QEHFSEFL RSHHFCKYQI EVLTSGTVYL ENSTTRP00000001592/1-650 ME-------- ---------- --HEHFSEFL RSHHFCKYQI EVLTSGTVYL ENSBTAP00000041402/1-655 ME-------- ---------- --HEHFSEFL RSHHFCKYQI EVLTSGTVYL BACU005243/1-637 ME-------- ---------- --HEHFSEFL RSHHFCKYQI EVLTSGTVYL bmy_19854T0/1-515 MEHEYVDVVF PHCAFLGVRV QSHEHFSEFL RSHHFCKYQI EVLTSGTVYL 401 450 ENSP00000225737/1-662 ADILFCESAL FYFSE----- ---------- ----YMEKED AVNILQFWLA ENSTTRP00000001592/1-650 ADILFCESAL FYFSE----- ---------- ----YMEKED AVNILQFWLA ENSBTAP00000041402/1-655 ADILFCESAL FYFSE----- ---------- ----YMEKED AVNILQFWLA BACU005243/1-637 ADILFCESAL FYFSE----- ---------- ----YMEKED AVNILQFWLA bmy_19854T0/1-515 ADILFCESAL FYFSEFKPAF VQVSMATWSG GNDQYMEKED AVNILQFWLA 451 500 ENSP00000225737/1-662 ADNFQSQLAA KKGQYDGQEA QNDAMILYDK YFSLQATHPL GFDDVVRLEI ENSTTRP00000001592/1-650 ADNFQSQLAA KKGQYDGQEA QNDAMILYDX XXXXXXXXXL -FDDVREI-- ENSBTAP00000041402/1-655 ADNFQSQLAA KKGQYDGQEA QNDAMILYDK YFSLQATHPL GFDDVVRLEI BACU005243/1-637 ADNFQSQLAA KKGQYDGQEA QNDAMILYDK YFSLQATHPL GFDDVVRLEI bmy_19854T0/1-515 ADNFQSQLAA KKGQYDGQEA QNDAMILYDK YFSLQATHPL GFDDVVRLEI 501 550 ENSP00000225737/1-662 ESNICREGGP LPNCFTTPLR QAWTTMEKVF LPGFLSSNLY YKYLNDLIHS ENSTTRP00000001592/1-650 -SNICRE-GS LPNCFITPLR QAW-TMEKVF LPGFLSSNLY YKYLNDLIHS ENSBTAP00000041402/1-655 ESNICREGGP LPNCFTTPLR QAWTTMEKVF LPGFLSSNLY YKYLNDLIHS BACU005243/1-637 ESNICREGGP LPNCFTTPLR QAWTTMEKVF LPGFLSSNLY YKYLNDLIHS bmy_19854T0/1-515 ESNICREGGP LPNCFTTPLR QAWTTMEKVF LPGFLSSNLY YKYLNDLIHS 551 600 ENSP00000225737/1-662 VRGDEFLGGN VSLTAPGSVG PPDESHPGSS DSSASQSSVK KASIKILKNF ENSTTRP00000001592/1-650 VRGDEFLGGG VLLTALGSAG PTEDSHPGSA DSSAVQSSVK KASVKILKNF ENSBTAP00000041402/1-655 VRGDEFLGGS GSLTAPGSMG PPDDSHPGAA DSATSQSSVK KASVKILKNF BACU005243/1-637 VRGDEFLGGG VLLTALGSAG PTEDSHPGAA DSSAVQSSVK KASVKILKNF bmy_19854T0/1-515 VRGDEFLGGG VLLTALGSAG PTEDSHPGAA DSSAVQSSVK KASVKILKNF 601 650 ENSP00000225737/1-662 DEAIIVDAAS LDPESLYQRT YAGKMTFGRV SDLGQFIRES EPEPDVRKSK ENSTTRP00000001592/1-650 DEAIIVDAAS LDPESLYQRT YAGKTTFGRV SDLGQFIRES EPEPDVKKSK ENSBTAP00000041402/1-655 DEAIIVDAAS LDPESLYQRT YAGKMTFGRV SDLGQFIRES EPEPDVKKSK BACU005243/1-637 DEAIIVDAAS LDPESLYQRT YAGKMTFGRV SDLGQFIRES EPEPDIKKSK bmy_19854T0/1-515 DEAIIVDAAS LDPESLYQRT YAGKMTFGRV SDLGQFIRES EPEPDIKKSK 651 700 ENSP00000225737/1-662 GSMFSQAMKK WVQGNTDEAQ EELAWKIAKM IVSDIMQQAQ YDQPLEKSTK ENSTTRP00000001592/1-650 GSMFSQAMKK WVQGNTDEAQ EELAWKIAKM IVSDVMQQAQ CDQPLEKSTK ENSBTAP00000041402/1-655 GSMFSQAMKK WVQGNTDEAQ EELAWKIAKM IVSDVMQQAQ CDQPLEKSTK BACU005243/1-637 GSMFSQAMKK WVQGNTDEAQ EELAWKIAKM IVSDVMQQAQ CDQPLEKSTK bmy_19854T0/1-515 GSMFSQAMKK WVQGNTDEAQ EELAWKIAKM IVSDVMQQAQ CDQPLEKSTK 701 750 ENSP00000225737/1-662 L------- ENSTTRP00000001592/1-650 L------- ENSBTAP00000041402/1-655 I------- BACU005243/1-637 VRMTCVLI bmy_19854T0/1-515 L-------