KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:57 2014 Check: 00 .. Name: ENSP00000244289/1-1076 Len: 1084 Check: 5216 Weight: 1.00 Name: ENSBTAP00000041426/1-756 Len: 1084 Check: 2155 Weight: 1.00 Name: ENSTTRP00000013198/1-1042 Len: 1084 Check: 5191 Weight: 1.00 Name: bmy_17400T0/1-756 Len: 1084 Check: 9443 Weight: 1.00 Name: BACU018308/1-1050 Len: 1084 Check: 6045 Weight: 1.00 // 1 50 ENSP00000244289/1-1076 -MEPGSKSVS RSDWQPEPHQ RPITPLEPGP EKTPIAQPES KTLQGSNTQQ ENSBTAP00000041426/1-756 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013198/1-1042 TMEPDSKLVS RPDWEPEPHQ TPITQSESGP EKTPTAQPAS KAQQGPDTQQ bmy_17400T0/1-756 ---------- ---------- ---------- ---------- ---------- BACU018308/1-1050 TMEPGSKLVS RPDWEPEPHQ TPISQSESGP EKTPTAQPAS KAQQGPDTQQ 51 100 ENSP00000244289/1-1076 KPASNQRPLT QQETPAQHDA ESQKEPRAQQ KSASQEEFLA PQKPAPQQSP ENSBTAP00000041426/1-756 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013198/1-1042 KRTAQQRPL- -----AQHGA ESQQEPRAQQ KSALQQECLA PQEPAPQQSP bmy_17400T0/1-756 ---------- ---------- ---------- ---------- ---------- BACU018308/1-1050 KHAAQQRPL- -----AQHEA ESQQEPRAQQ KSALQ-EFLA PQEPAPQQSP 101 150 ENSP00000244289/1-1076 YIQRVLLTQQ EAASQQGPGL GKESITQQEP ALRQRHVAQP GPGPGEPPPA ENSBTAP00000041426/1-756 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013198/1-1042 PIQRVPFRKQ EAASQHRPGP GKDSRTQQEP ELREGAGAQV GPG--KMPPA bmy_17400T0/1-756 ---------- ---------- ---------- ---------- ---------- BACU018308/1-1050 PIQRVPFRKQ EAASQHRPGP GEDSRTQQEP ELREGAGAQV GPGPQNGPPA 151 200 ENSP00000244289/1-1076 QQEAESTPAA QAKPGAKREP SAPTESTSQE TPEQSDKQTT PVQGAKSKQG ENSBTAP00000041426/1-756 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013198/1-1042 QTELRS---- ---------- -----QERRR QSDPTAQHAA PAQGAKSQEG bmy_17400T0/1-756 ---------- ---------- ---------- ---------- ---------- BACU018308/1-1050 QTELMS---- ---------- -----QERRR QSDPTAQHAA PAQGAKSQEG 201 250 ENSP00000244289/1-1076 SLTELGFLTK LQELSIQRSA LEWKALSEWV TDSESESDVG SSSDTDSPAT ENSBTAP00000041426/1-756 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013198/1-1042 SLAEWQFLSK PNEPSMQQPA SEHKTFLERV VDSGADSDLG FTLETNSPAQ bmy_17400T0/1-756 ---------- ---------- ---------- ---------- ---------- BACU018308/1-1050 SLAEWQFLSK PNEPSIQQLA SEHKTFLEWV ADSGPESDLG FILETNLPAK 251 300 ENSP00000244289/1-1076 MGGMVAQGVK LGFKGKSGYK VMSGYSGTS- PHEKTSARNH RHYQDTASRL ENSBTAP00000041426/1-756 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013198/1-1042 RGGTVAQGMK PVFKGKPGYE VMSGFGGTSL PSKKTSSQNP RRYRNPASRL bmy_17400T0/1-756 ---------- ---------- ---------- ---------- ---------- BACU018308/1-1050 RGGTVAQGMK LVSKGKPGYE VMSGFGGTSL PSKKTSSQNP RHYRNPASRL 301 350 ENSP00000244289/1-1076 IHNMDLRTMT QSLVTLAEDN IAFFSSQGPG ETAQRLSGVF AGVREQALGL ENSBTAP00000041426/1-756 ---MDLRTMT QSLVTLAEDN MAFFSSQGPG ETARRLTGVF AGIREQALGL ENSTTRP00000013198/1-1042 SHRMDLHTVT QSLVTLAEDN MAFFSSQGPG ETARRLSGVF AGVREQALGL bmy_17400T0/1-756 ---MDLRTMT QSLVTLAEDN MAFFSSQGPG ETARRLSGVF AGVREQALGL BACU018308/1-1050 SHSMDLRTMT QSLVTLAEDN MAFFSSQGPG ETARRLSGVF AGVREQALGL 351 400 ENSP00000244289/1-1076 EPALGRLLGV AHLFDLDPET PANGYRSLVH TARCCLAHLL HKSRYVASNR ENSBTAP00000041426/1-756 EPALGRLLSV AHLFDLDTET PANGYRSLVH TARCCLAHLL HKSRYVASNR ENSTTRP00000013198/1-1042 EPTLGRLLSV AHLFDLDAET PANGYRSLVH TARCCLVHLL HKSRYVASNR bmy_17400T0/1-756 EPTLGRLLSV AHLFDLDAET PANGYRSLVH TARCCLGHLL HKSRYVASNR BACU018308/1-1050 EPTLGRLLSV AHLFDLDAET PANGYRSLVH TARCCLGHLL HKSRYVASNR 401 450 ENSP00000244289/1-1076 RSIFFRTSHN LAELEAYLAA LTQLRALVYY AQRLLVTNRP GVLFFEGDEG ENSBTAP00000041426/1-756 RSIFFRTSHN LAELEAYLAA LTQLRALAYY AQRLLTTNQP GRLFFEGDER ENSTTRP00000013198/1-1042 RSIFFRTSHN LAELEAYLTA LTQLRALAYY AQHLLATNQP GKLFFEGDER bmy_17400T0/1-756 RSIFFRTSHN LAELEAYLAA LTQLRALAYY AQHLLATNQP GRLFFEGDER BACU018308/1-1050 RSIFFRTSHN LAELEAYLAA LTQLRALAYY AQHLLATNQP GRLFFEGDER 451 500 ENSP00000244289/1-1076 LTADFLREYV TLHKGCFYGR CLGFQFTPAI RPFLQTISIG LVSFGEHYKR ENSBTAP00000041426/1-756 VIADFLREYV TLHKGCFYGR CLGFQFTPAI RPFLQTISIG LVSFGEHYKR ENSTTRP00000013198/1-1042 VIADFLHEYI TLHKGCFYGR CLGFQFTPAI RPFLQTISIG LVSFGEHYKR bmy_17400T0/1-756 LVADFLHEYV TLHKGCFYGR CLGFQFTPAI RPFLQTISIG LVSFGEHYKR BACU018308/1-1050 LIADFLHEYV TLHKGCFYGR CLGFQFTPAI RPFLQTISIG LVSFGEHYKR 501 550 ENSP00000244289/1-1076 NETGLSVAAS SLFTSGRFAI DPELRGAEFE RITQNLDVHF WKAFWNITEM ENSBTAP00000041426/1-756 NETGISVTAS SLFTGGRFAI DPELRGAEFE RIIQNLDVHF WKAFWNITEI ENSTTRP00000013198/1-1042 NETGLSVTAS SLFTGGRFAI DPELRGAEFE RIVQNLDVHF WKTFWNITEI bmy_17400T0/1-756 NETGLSVTAS SLFTGGRFAI DPELRGAEFE RIVQNLDVHF WKAFWNITEI BACU018308/1-1050 NETGLSVTAS SLFTGGRFAI DPELRGAEFE RIVQNLDVHF WKAFWNITEI 551 600 ENSP00000244289/1-1076 EVLSSLANMA SATVRVSRLL SLPPEAFEMP LTADPTLTVT ISPPLAHTGP ENSBTAP00000041426/1-756 QVLSSLANMA STTVRVSRLL SLPPVAFEMP LTSDPELTVT ISPPLAHTGP ENSTTRP00000013198/1-1042 QVLSSLANMT SATVRVSRLL SLPPITFEMP LTADPKVMVT ISPPLAHTGP bmy_17400T0/1-756 QVLSSLANMA SATVRVSRLL SLPPTAFEMP LTADPKVMVT ISPPLAHTGP BACU018308/1-1050 QVLSSLANMA SATVRVSRLL SLPPTAFEMP LTADPKVTVT ISPPLAHTGP 601 650 ENSP00000244289/1-1076 GPVLVRLISY DLREGQDSEE LSSLIKSNGQ RSLELWPRPQ QAPRSRSLIV ENSBTAP00000041426/1-756 GPVLVRLISY DLREGQDSKE LSSFVRSEGP RSLELRLRPQ QAPRSRALVV ENSTTRP00000013198/1-1042 GPVLVRLISY DLREGQDSEE LSSLGRSEGP RSLELRSRPQ QAPRSRCLVV bmy_17400T0/1-756 GPVLVRLISY DLREGQDSEE LSSLVRSEGP RSLELRSRPQ QAPRSRCLVV BACU018308/1-1050 GPVLVRLISY DLREGQDSEE LSRLVRSEGP RSLELRSRPQ QAPRSRCLVV 651 700 ENSP00000244289/1-1076 HFHGGGFVAQ TSRSHEPYLK SWAQELGAPI ISIDYSLAPE APFPRALEEC ENSBTAP00000041426/1-756 HIHGGGFVAQ TSKSHEPYLK SWAQELGAPI LSIDYSLAPE APFPRALEEC ENSTTRP00000013198/1-1042 HIHGGGFVAQ TSKSHEPYLK SWAQELGAPI LSIDYSLAPE APFPRALEEC bmy_17400T0/1-756 HIHGGGFVAQ TSKSHEPYLK SWAQELGAPI LSIDYSLAPE APFPRALEEC BACU018308/1-1050 HIHGGGFVAQ TSKSHEPYLK SWAQELGAPI LSIDYSLAPE APFPRALEEC 701 750 ENSP00000244289/1-1076 FFAYCWAIKH CALLGSTGER ICLAGDSAGG NLCFTVALRA AAYGVRVPDG ENSBTAP00000041426/1-756 FYAYCWAVKH CALLGSTGER ICLAGDSAGG NLCFTVSLRA AAYGVRVPDG ENSTTRP00000013198/1-1042 FYAYCWAVKH CALLGSTGER ICLAGDSAGG NLCFTVSLRA AAYGVRVPDG bmy_17400T0/1-756 FYAYCWAXKH CALLGSTGER ICLAGDSAGG NLCFTVSLRA AAYGVRLPDG BACU018308/1-1050 FYAYCWAVKH CALLGSTGER ICLAGDSAGG NLCFTVSLRA AAYGVRLPDG 751 800 ENSP00000244289/1-1076 IMAAYPATML QPAASPSRLL SLMDPLLPLS VLSKCVSAYA GAKTEDHSNS ENSBTAP00000041426/1-756 IMAAYPATML QSTASPSRLL SLMDPLLPLS VLSKCVSAYA GAETEDHPDS ENSTTRP00000013198/1-1042 IMAAYPATML QATASPSRLL SLMDPLLPLS MLSKCVNAYA GGETEDHCDS bmy_17400T0/1-756 IMAAYPATML QATASPSRLL SLMDPLLPLS ILSKCVSAYA GGETEDHSDS BACU018308/1-1050 IMAAYPATML QATASPSRLL SLMDPLLPLS ILSKCVSAYA GGETEDHSDS 801 850 ENSP00000244289/1-1076 DQKALGMMGL VRRDTALL-- ---LRDFRLG ASSWLNSFLE LSGRKSQKMS ENSBTAP00000041426/1-756 DQKALGVMGL VQRDTALL-- ---LRDLRLG ASSWLNSFLE LGGQKSHLKS ENSTTRP00000013198/1-1042 DQKALGMVGL VQRDTALL-- ---FRDLRLG ASSWLNSFLE LSGQKSHPNL bmy_17400T0/1-756 GQKALGMMGL VQRDTALL-- ---FRDLRLG ASSWLNSFLE LSGHKSHPNS BACU018308/1-1050 GQKALGMMGL EQLDTALLPP PGRFRDLRLG ASSWLNSFLE LSGHKSHPNS 851 900 ENSP00000244289/1-1076 EPIAEPMRRS VSEAALAQPQ GPLGTDSLKN LTLRDLSLRG NSETSSDTPE ENSBTAP00000041426/1-756 VSKTEPMRRS VSEAALTRPE GPLGTDSLKS LKLHDLGLRN SSDT-TDTPE ENSTTRP00000013198/1-1042 VPIAEPMRCS VSETALAQPE SPKGTDSLKG LTLHDLSLRG SSET-PDTPE bmy_17400T0/1-756 VPIAEPMRCS VSETALAQPE GPLGTDSLKG LTLHDLSLRG SSET-PDTPE BACU018308/1-1050 VPIAEPMRCS VSETALAQPE GPLGTDSLKG LTLHDLSLRG SSET-PDTPE 901 950 ENSP00000244289/1-1076 MSLSAETLSP STPSDVNFLL PPEDAGEEAE AKNELSPMDR GLGVRAAFPE ENSBTAP00000041426/1-756 LSLSAETLGP SAPSTINFLL GSEDGSEMSE APEELNNKDR VRGVGAAFPE ENSTTRP00000013198/1-1042 LSLSVEARGH STPSAINFLL RPEDASEESE AGDELSTKDR ---VYAAFPE bmy_17400T0/1-756 LSLSAEARGH STPSAINFLL RPEVASEESE AEAELSTKDR VQGVCAAFPE BACU018308/1-1050 LSLSAEAHGH STPSAINFLL RPEVASEESE AGAELSTKDR VQGVCAAFPE 951 1000 ENSP00000244289/1-1076 GFHPRRSSQG ATQMPLYSSP IVKNPFMSPL LAPDSMLKSL PPVHIVACAL ENSBTAP00000041426/1-756 GFHPRRCSQG AMWMPLYSAP IVKNPFMSPL LAPNSMLQTL PPVHIVACAL ENSTTRP00000013198/1-1042 GFHPRRSSHD VKRVTLYSSP ILKNPFMSPL LAPDSMLQTL PPVHIVACAL bmy_17400T0/1-756 GFHPRRSSHG AKRMTIYSSP IVKNPFMSPL LAPDSMLQTL PPVHIVACAL BACU018308/1-1050 GFHPRRSSHS AKRMTPYSSP IVKNPFMSPL LAPDSMLQTL PPVHIVACAL 1001 1050 ENSP00000244289/1-1076 DPMLDDSVML ARRLRNLGQP VTLRVVEDLP HGFLTLAALC RETRQAAELC ENSBTAP00000041426/1-756 DPMLDDSVMF ARRLRGLGQP VTLRVVEDLP HGFLSLAALC RETRQAAALC ENSTTRP00000013198/1-1042 DPILDDSVMF ARRLRSLSQP VTLRVVEDLP HGFLSLAALC QETRQAAALC bmy_17400T0/1-756 DPMLDDSVMF ARRLRSLGQP VTLRVVEDLP HGFLSLAALC HETRQAAALC BACU018308/1-1050 DPMLDDSVMF ARRLRSLGQP VTLRVVEDLP HGFLSLAALC HETRQATALC 1051 1100 ENSP00000244289/1-1076 VERIRLVLT- PPAGAGPSGE TGAAGVDGGC GGRH ENSBTAP00000041426/1-756 VERIRLILNL P--------- ----G--PPV ---- ENSTTRP00000013198/1-1042 VERIRLVLNA GPAGLSRGTE ATSGE--GGC ---- bmy_17400T0/1-756 VERIRLVLN- PP-------- ----G--PPV ---- BACU018308/1-1050 VEHIRLVLN- GPAGLSRGTE PGHAG--RGG ----