KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:52:00 2014  Check: 00 ..

 Name: ENSP00000349313/1-299     Len:    299  Check:  2488  Weight:  1.00
 Name: bmy_13371T0/1-214         Len:    299  Check:  1674  Weight:  1.00
 Name: ENSBTAP00000041475/1-299  Len:    299  Check:  4916  Weight:  1.00
 Name: ENSTTRP00000009503/1-299  Len:    299  Check:  4138  Weight:  1.00

//


                          1                                                   50
ENSP00000349313/1-299     MEELEQGLLM QPWAWLQLAE NSLLAKVFIT KQGYALLVSD LQQVWHEQVD 
bmy_13371T0/1-214         MEELEQGLLM QPWAWLQLAE NSLLAKAYIT KQGYALLVSD LQQVWHEQVD 
ENSBTAP00000041475/1-299  MEELEQGLLM QPWAWLQLAE NSLLAKAYIT RQGYALLVSD LQQVWHEQVD 
ENSTTRP00000009503/1-299  MEELEQGLLM QPWAWLQLAE NSLLAKAYIT KQGYALLVSD LQQVWHEQVD 


                          51                                                 100
ENSP00000349313/1-299     TSVVSQRAKE LNKRLTAPPA AFLCHLDNLL RPLLKDAAHP SEATFSCDCV 
bmy_13371T0/1-214         TSVVSQRAKE LNKRLTAPPA AFLCHLDDLL RPLLKDTACP GKATFSCDRV 
ENSBTAP00000041475/1-299  TSVISQRAKE LNKRLTAPPE AFLRHLDDLL RPLLKDASCP GTATFSCDRV 
ENSTTRP00000009503/1-299  TSVISQRAKE LNKRLTAPPA AFLCHLDDLL CPLLKDTACP GKATFSCDRV 


                          101                                                150
ENSP00000349313/1-299     ADALILRVRS ELSGLPFYWN FHCMLASPSL VSQHLIRPLM GMSLALQCQV 
bmy_13371T0/1-214         AEALILRVRS ELSGLPFYWN FHCILASPSL VSQHLIRPLM GMSLALQCQV 
ENSBTAP00000041475/1-299  AEALILQVRS ELSGLPFYWN FHCILASPSL VSQHLIRPLM GMSLALQCQV 
ENSTTRP00000009503/1-299  AEALILRVRS ELSGLPFYWN FHCILASPSL VSQHLIRPLM GMSLALQCQV 


                          151                                                200
ENSP00000349313/1-299     RELATLLHMK DLEIQDYQES GATLIRDRLK TEPFEENSFL EQFMIEKLPE 
bmy_13371T0/1-214         RDLATLLRMK DLEIQDYQES GATLSRG--- -----ERTFF EEL------- 
ENSBTAP00000041475/1-299  RDLTTLLHMK DLEIQDYQES GATLSRDRLK TEPFEESSFL EQFMVEKLPE 
ENSTTRP00000009503/1-299  RDLATLLHMK DLEIQDYQES GATLSRDRLK TEPFEENSFL GQFMVEKLPE 


                          201                                                250
ENSP00000349313/1-299     ACSIGDGKPF VMNLQDLYMA VTTQEVQVGQ KHQGAGDPHT SNSASLQGID 
bmy_13371T0/1-214         ---------- ---------- --------GQ EWY------R QSKSLSKGGD 
ENSBTAP00000041475/1-299  ACSVGDGRPF IANLQSMYMA VTRQAIQVGQ KHHDTGDPHT SSSAFSQGTD 
ENSTTRP00000009503/1-299  ACSVGDGKRF VTNLQSLYMA VTRQEIQVGQ KLRGTEDPQA SSSASSQGTD 


                          251                                                300
ENSP00000349313/1-299     SQCVNQPEQL VSSAPTLSAP EKESTGTSGP LQRPQLSKVK RKKPRGLFS 
bmy_13371T0/1-214         SFALGRSVED ---------- ---------- ---------- ----RAI-- 
ENSBTAP00000041475/1-299  NQRLNQLEEP VSSTPSLPGP ETEPTVSSGP MQKPQLLKVK RKKLRGLFS 
ENSTTRP00000009503/1-299  SQLLNQPEEP DSSAPPLPVP EKEPTVTSGP TQRPQLLKVK RKKLRGLFS