KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:07 2014 Check: 00 .. Name: ENSP00000388631/1-762 Len: 800 Check: 9583 Weight: 1.00 Name: ENSBTAP00000041545/1-791 Len: 800 Check: 1711 Weight: 1.00 Name: bmy_03167T0/1-427 Len: 800 Check: 9902 Weight: 1.00 Name: BACU019759/1-763 Len: 800 Check: 4808 Weight: 1.00 Name: ENSTTRP00000010246/1-760 Len: 800 Check: 1628 Weight: 1.00 // 1 50 ENSP00000388631/1-762 MASLLQDQLT TDQDLLLMQE GMPMRKVRSK SWKKLRYFRL QNDGMTVWHA ENSBTAP00000041545/1-791 MAYLLQGRLP INQDLLLMQK GTMMRKVRSK SWKKLRFFRL QDDGMTVWHA bmy_03167T0/1-427 ---------- ---------- ---------- ---------- ---------- BACU019759/1-763 MASLLQGRLP VNQDLLLMQK GTLMRKVRSK SWKKLRYFRL QDDGMTVWHA ENSTTRP00000010246/1-760 MASLLQGRLP VNQDLLLMQK GTLMRKVRSK SWKKLRYFRL HDDGMTVWHA 51 100 ENSP00000388631/1-762 RQARGSAKPS FSISDVETIR NGHDSELLRS LAEELPLEQG FTIVFHGRRS ENSBTAP00000041545/1-791 RQAGGRAKPS FSISDVDTVR EGHESELLRN LAEEFPLEQG FTIVFHGRRS bmy_03167T0/1-427 ---------- ---------- ---------- ---------- ---------- BACU019759/1-763 RQAGGRAKPS FSISDVDTVR EGHESELLRN LAEEFPLEQG FTIVFHGRRS ENSTTRP00000010246/1-760 RQ-RSRAKPS FSISDVDTVR EGHESELLRN LAEEFPLEQG FTIVFHGRRS 101 150 ENSP00000388631/1-762 NLDLMANSVE EAQIWMRGLQ LLVDLVTSMD HQERLDQ--W LSDWFQRGDK ENSBTAP00000041545/1-791 NLDLVANSVQ EAQTWMQGLQ LLVGFVTNMD QQERLDQ--W LSDWFQRGDK bmy_03167T0/1-427 ---------- ---------- ---------- ---------- ---------- BACU019759/1-763 NLDLVANSVE EAQIWMQGLQ LLVDFVTSMD QQERLDQPGW LSDWFQHGDK ENSTTRP00000010246/1-760 NLDLVANSVE EAQIWMQGLQ LLVDFVTSMD QQERLDR--W LSDWFQHGDK 151 200 ENSP00000388631/1-762 NQDGKMSFQE VQRLLHLMNV EMDQEYAFSL FQAADTSQSG TLEGEEFVQF ENSBTAP00000041545/1-791 NQDGRMSFGE VQRLLHLMNV EMDQEYAFQL FQTADTSQSG TLEGEEFVEF bmy_03167T0/1-427 -----MTFGE VQRLLHLMNV EMDQDHAFQL FQRADASQSG TLEGEEFVEF BACU019759/1-763 NQDGRMTFGE VQRLLHLMNV EMDQDHAFQL FQRADASQSG TLEGEEFVEF ENSTTRP00000010246/1-760 NQDGRMSFGE VQRLLHLMNV EMDQDHAFQL FQRADASQSG TLEGEEFVEF 201 250 ENSP00000388631/1-762 YKALTKRAEV QELFESFSAD GQKLTLLEFL DFLQEEQKER DCTSELALEL ENSBTAP00000041545/1-791 YKSLTQRPEV QELFEKFSSD GQKLTLLEFV DFLQEEQKEG ERASDLALEL bmy_03167T0/1-427 YKSLTQRPEV QELFEKFSSD GQKLTLLEFV DFLQEEQKEG ERASDLALEL BACU019759/1-763 YKSLTQRPEV QELFEKFSSD GQKLTLLEFV DFLQEEQKEG ERASDLALEL ENSTTRP00000010246/1-760 YKSLTQRPEV QELFEKFSSD GQKLTLLEFV DFLQEEQKEG ERASDLALEL 251 300 ENSP00000388631/1-762 IDRYEPSDSG KLRHVLSMDG FLSYLCSKDG DIFNPACLPI YQDMTQPLNH ENSBTAP00000041545/1-791 IDRYEPSESG KLRHVLSMDG FLGYLCSKDG DIFNPTCHPL YQDMTQPLNH bmy_03167T0/1-427 IDCYEPSDSG KLRHVLSMDG FLSYLYSKDG DIFNPTCLPI YQDMTQPLNQ BACU019759/1-763 IDCYEPSDSG KLRHVLSMDG FLSYLYSKDG DIFNPTCLPI YQDMTQPLNQ ENSTTRP00000010246/1-760 IDCYEPSDSG KLRHVLSMDG FLSYLYSKDG DIFNPTCLPI YQDMTQPLNQ 301 350 ENSP00000388631/1-762 YFICSSHNTY LVGDQLCGQS SVEGYIRALK RGCRCVEVDV WDGPSGEPVV ENSBTAP00000041545/1-791 YYINSSHNTY LVGDQLCGQS SVEGYIRALK RGCRCVEVDI WDGPSGEPIV bmy_03167T0/1-427 YYISSSHNTY LVGDQLCGQS SVEGYIRALK RGCRCVEVDI WDGPSGEPIV BACU019759/1-763 YYISSSHNTY LVGDQLCGQS SVEGYIRALK RGCRCVEVDI WDGPSGEPIV ENSTTRP00000010246/1-760 YYISSSHNTY LVGDQLCGQS SVEGYIRALK RGCRCVEVDI WDGPSGEPIV 351 400 ENSP00000388631/1-762 YHGHTLTSRI LFKDVVATVA QYAFQTSDYP VILSLETHCS WEQQQTMARH ENSBTAP00000041545/1-791 YHGHTLTSRI PFKDVVAAIG QYAFQTSDYP VILSLENHCS WEQQEIIVRH bmy_03167T0/1-427 YHGHTLTSRI PFKDVVAAIG QYAFQTSDYP VILSLENHCS WEQQEIIARH BACU019759/1-763 YHGHTLTSRI PFKDVVAAIG QYAFQTSDYP VILSLENHCS WEQQEIIARH ENSTTRP00000010246/1-760 YHGHTLTSRI PFKDVVAAIG QYAFQTSDYP VILSLENHCS WEQQEIIARH 401 450 ENSP00000388631/1-762 LTEILGEQLL STTLDGVLPT QLPSPEELRR KILVKGKKL- TLEEDLEYEE ENSBTAP00000041545/1-791 LTEILGDQLL TTALDGQPPT QLPSPEDLRG KILVKGKKL- ----MLEEEE bmy_03167T0/1-427 LTEILGNQLL STTLDGHLPT QLPSPEELRR KILVKGKKLK TLEEDLEEEE BACU019759/1-763 LTEILGNQLL STTLDGHLPT QLPSPEELRR KILVKGKKLK TLEEDLEEEE ENSTTRP00000010246/1-760 LTEILGNQLL STTLDGQLPT QLPSPEELRR KILVKGKKLK TLEEDLEEEE 451 500 ENSP00000388631/1-762 EEAEPELE-- -ESELALESQ FETEPEPQEQ NLQNKDKKK- ---------- ENSBTAP00000041545/1-791 EEPEAELEAE QEARLDLEAQ LES--EPQDL SPRSEDKKKV VMCPLLCRPL bmy_03167T0/1-427 EEPESELE-- -EAELQLEAQ MES--EPQEL SPRSKDKKK- ---------- BACU019759/1-763 EEPESEPE-- -EAELQLEAQ MES--EPQEL SPRSKDKKK- ---------- ENSTTRP00000010246/1-760 EEPESELE-- -EAELQLEAQ MES--EPQEL SPRSKDKKK- ---------- 501 550 ENSP00000388631/1-762 ---------- ---------- -KSKPILCPA LSSLVIYLKS VSFRSFTHSK ENSBTAP00000041545/1-791 CCQIMAQAPI SKPGLLLFPK QKPKAILCPA LSALVVYLKA VTFYSFTHSR bmy_03167T0/1-427 ---------- ---------- -KSKPILCPS LSALVVYLKA VTFYSFTHSR BACU019759/1-763 ---------- ---------- -KSKPILCPS LSALVVYLKA VTFYSFTHSR ENSTTRP00000010246/1-760 ---------- ---------- -KSKPILCPS LSALVVYLKA VTFYSFTHSR 551 600 ENSP00000388631/1-762 EHYHFYEISS FSETKAKRLI KEAGNEFVQH NTWQLSRVYP SGLRTDSSNY ENSBTAP00000041545/1-791 EHYHFYETSS FSETKAKSLI KEAGDEFVQH NAWQLSRVYP SGLRTDSSNY bmy_03167T0/1-427 EHYRFYETSS FSEAKAKSLI KEAGQD---- ---------- ---------- BACU019759/1-763 EHYRFYETSS FSEAKAKSLI KEAGNEFVLH NTWQLSRVYP SGLRTDSSNY ENSTTRP00000010246/1-760 EHYRFYETSS FSEAKAKSLI KEXXNEFVLH NTWQLSRVYP SGLRTDSSNY 601 650 ENSP00000388631/1-762 NPQELWNAGC QMVAMNMQTA GLEMDICDGH FRQNGGCGYV LKPDFLRDIQ ENSBTAP00000041545/1-791 NPQEFWNAGC QMVAMNMQTA GLEMDLCDGL FRQNAGCGYV LKPDFLRDAQ bmy_03167T0/1-427 ---------- ---------- ---------- --QKGGTGKE LR--WVR--- BACU019759/1-763 NPQEFWNAGC QMVALNMQTA GLEMDLCDGL FRQNAGSGYV LKPDFLRDAQ ENSTTRP00000010246/1-760 NPQEFWNAGC QMVALNMQTA GLEMDLCDGL FRQNAGSGYV LKPDFLRDAQ 651 700 ENSP00000388631/1-762 SSFHPEKPIS PFKAQTLLIQ VISGQQLPKV DKTKEGSIVD PLVKVQIFGV ENSBTAP00000041545/1-791 SSFHPERPIS PFKAQTLIIQ VISGQQLPKV DNTKEQSIVD PLVRVEIFGV bmy_03167T0/1-427 ---------- ---------- ---------- ---------- ---------V BACU019759/1-763 SSFHPERPIS PFKAQTLLIQ VISGQQLPKV DKTKEESIVD PLVRVEIFGV ENSTTRP00000010246/1-760 SSFHPERPIS PFKAQTLLIQ VISGQQLPKV DKTKEESIVD PLVRVEIFGV 701 750 ENSP00000388631/1-762 RLDTARQETN YVENNGFNPY WGQTLCFRVL VPELAMLRFV VMDYDWKSRN ENSBTAP00000041545/1-791 RPDTTRQETS YVENNGFNPY WGQTLCFRIL VPELALLRFV VKDYDWKSRN bmy_03167T0/1-427 RSDGQADESQ --EDEGAKEG W--------- ---------- ---------- BACU019759/1-763 RPDTSRQETS YVENNGFNPY WGQTLCFRVL VPELALLRFV VKDYDWKSRN ENSTTRP00000010246/1-760 RQDTTRQETS YVENNGFNPY WGQTLCFRVL VPELALLRFV VKDYDWKSRN 751 800 ENSP00000388631/1-762 DFIGQYTLPW TCMQQGYRHI HLLSKDGISL RPASIFVYIC IQEGLEGDES ENSBTAP00000041545/1-791 DFIGQYTLPW SCMQQGYRHI HLLSKDGLSL HPASIFVHIC TQEVSEEAES bmy_03167T0/1-427 ---------W S--------- ---------- ---------- --QGTPQTRQ BACU019759/1-763 DFIGQYTLPW NCMQQGYRHI HLLSKDGISL HPASIFVHIC TREGLEGVES ENSTTRP00000010246/1-760 DFIGQYTLPW NCMQQGYRHI HLLSKDGISL HPASIFVHIC TREGLEGVES