KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:52:08 2014 Check: 00 .. Name: ENSTTRP00000005666/1-454 Len: 548 Check: 9696 Weight: 1.00 Name: bmy_07711T0/1-509 Len: 548 Check: 6187 Weight: 1.00 Name: BACU008687/1-438 Len: 548 Check: 9091 Weight: 1.00 Name: ENSBTAP00000041566/1-507 Len: 548 Check: 1672 Weight: 1.00 // 1 50 ENSTTRP00000005666/1-454 ---------- ---------- ---------- ---------- ------DGQY bmy_07711T0/1-509 ---------- ---------- ---------- ---------M SFNGTEDGQY BACU008687/1-438 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041566/1-507 MMAAAPIQQN GTHTGVPIDL DPPDSRKRPL EAPPEAGSTK RTNTGEDGQY 51 100 ENSTTRP00000005666/1-454 FLKVVIPSYV AGSITGKGGL TIVQLQKETG STIKLFKSKD FYP--XXTER bmy_07711T0/1-509 FLKVLIPSYA AGSIIGKGGQ TIVQLQKETG ATIKLSKSKD FYPEIASVNK BACU008687/1-438 MLIFFLSAY- ---------- --------SS STLQIWLLRC MSS--GTTER ENSBTAP00000041566/1-507 FLKVLIPSYA AGSIIGKGGQ TIVQLQKETG ATIKLSKSKD FYP--GTTER 101 150 ENSTTRP00000005666/1-454 VCLIQ----G TVEALNAVHG FIAEKIREMP QNVSKTEPVS ILQPQTTVNP bmy_07711T0/1-509 EYQVRKKNMG TVEALNAVHG FIAEKIREMP QNVAKTEPVS ILQPQTTVNP BACU008687/1-438 VCLIQ----G TVEALNAVHG FIAEKIREMP QNVAKTEPVS ILQPQTTVNP ENSBTAP00000041566/1-507 VCLIQ----G TVEALNAVHG FIAEKIREMP QNVAKTEPVS ILQPQTTVNP 151 200 ENSTTRP00000005666/1-454 DRIKQTLPSS PTTTKSSPSD PMTTSRANQX XXXXXXXXXX XXXXXXXXXX bmy_07711T0/1-509 DRIKQTLPSS PTTTKSSPSD PMTTSRANQV KIIVPNSTAG LIIGKGGATV BACU008687/1-438 DRIKQTLPSS PTTTKSSPSD PMTTSRANQV KIIVPNSTAG LIIGKGGATV ENSBTAP00000041566/1-507 DRIKQTLPSS PTTTKSSPSD PMTTSRANQV KIIVPNSTAG LIIGKGGATV 201 250 ENSTTRP00000005666/1-454 XXXXXXXXXX XQLSQK-DGI N-QERVTV-- --SEEQRKAV ELIIQKIQED bmy_07711T0/1-509 KAIMEQSGAW VQLSQKPDGI NLQERVVTVS GEPEQNRKAV ELIIQKIQED BACU008687/1-438 KAIMEQSGAW VQLSQKPDGI NLQERVVTVS GEPEQNRKAV ELIIQKIQED ENSBTAP00000041566/1-507 KAIMEQSGAW VQLSQKPDGI NLQERVVTVS GEPEQNRKAV ELIIQKIQED 251 300 ENSTTRP00000005666/1-454 PQSGSCLNIS YANVTGPVAN SNPTGS-YAN TAEVLPTAAA AAGLLGHANL bmy_07711T0/1-509 PQSGSCLNIS YANVTGPVAN SNPTGSPYAN TAEVLPTAAA AAGLLGHANL BACU008687/1-438 PQSGSCLNIS YANVTGPVAN SNPTGSPYAN TAEVLPTAAA AAGLLGHANL ENSBTAP00000041566/1-507 PQSGSCLNIS YANVTGPVAN SNPTGSPYAN TAEVLPTAAA AAGLLGHANL 301 350 ENSTTRP00000005666/1-454 AGVAAFPAVL SGFTGNDLVA ITSALNTLAS YGYNLNTLGL GLSQAAATGA bmy_07711T0/1-509 AGVAAFPAVL SGFTGNDLVA ITSALNTLAS YGYNLNTLGL GLSQAAATGA BACU008687/1-438 AGVAAFPAVL SGFTGNDLVA ITSALNTLAS YGYNLNTLGL GLSQAAATGA ENSBTAP00000041566/1-507 AGVAAFPAVL SGFTGNDLVA ITSALNTLAS YGYNLNTLGL GLSQAAATGA 351 400 ENSTTRP00000005666/1-454 LAAAAASANP AAAAANLLAT YASEASASGS TAGGTAGTFA LGSLAAATAA bmy_07711T0/1-509 LAAAAASANP AAAAANLLAT YASEASASGS TAGGTAGTFA LGSLAAATAA BACU008687/1-438 LAAAAASANP AAAAANLLAT YASEASASGS TAGGTAGTFA LGSLAAATAA ENSBTAP00000041566/1-507 LAAAAASANP AAAAANLLAT YASEASASGS TAGGTAGTFA LGSLAAATAA 401 450 ENSTTRP00000005666/1-454 TNGYFGAASP LAASAILGTE KSTDGSKDVV EIAVPENLVG AILGKGGKTL bmy_07711T0/1-509 TNGYFGAASP LAASAILGTE KSTDGSKDVV EIAVPENLVG AILGKGGKTL BACU008687/1-438 TNGYFGAASP LAASAILGTE KSTDGSKDVV EIAVPENLVG AILGKGGKTL ENSBTAP00000041566/1-507 TNGYFGAASP LAASAILGTE KSTDGSKDVV EIAVPENLVG AILGKGGKTL 451 500 ENSTTRP00000005666/1-454 VEYQELTGAR IQISKKGEFV PGTRNRKV-- ---TITGTPA A--------- bmy_07711T0/1-509 VEYQELTGAR IQISKKGEFV PGTRNRKCLP RPAALKNNPD SEKLFPTKKQ BACU008687/1-438 VEYQELTGAR IQISKKGEFV PGTRNRKV-- ---TITGTPA A--------- ENSBTAP00000041566/1-507 VEYQELTGAR IQISKKGEFV PGTRNRKV-- ---TITGTPA A--------- 501 550 ENSTTRP00000005666/1-454 --------TQ AAQYLITQR- ---ITYEQGV RAANPQKVG- -------- bmy_07711T0/1-509 RKQTNSKNNK TAQTFCSGTL PLFISYRTNN SIHSEKKLSP GTTPVFRN BACU008687/1-438 --------TQ AAQYLITQR- ---ITYEQGV RAANPQKVG- -------- ENSBTAP00000041566/1-507 --------TQ AAQYLITQR- ---ITYEQGV RAANPQKVG- --------