KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:18 2014 Check: 00 .. Name: ENSP00000348775/1-700 Len: 798 Check: 3937 Weight: 1.00 Name: ENSTTRP00000013616/1-699 Len: 798 Check: 9340 Weight: 1.00 Name: ENSBTAP00000041634/1-633 Len: 798 Check: 9071 Weight: 1.00 Name: bmy_21459T0/1-437 Len: 798 Check: 5499 Weight: 1.00 Name: BACU004152/1-661 Len: 798 Check: 2388 Weight: 1.00 // 1 50 ENSP00000348775/1-700 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013616/1-699 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041634/1-633 ---------- ---------- ---------- ---------- ---------- bmy_21459T0/1-437 GTSASVLGTS VECLLCALGG ARTREPKGLA SSEGPARISA GAPRAKVAGV BACU004152/1-661 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000348775/1-700 MASTVEGGDT ALLPEFPRGP LDAYRARASF SWKELALFTE GEGMLRFKKT ENSTTRP00000013616/1-699 MAPLEEGSDD PVLPDLPRGP LHAARARASF PWKELALFWE GPDMLRFKKN ENSBTAP00000041634/1-633 MAPLRESSGD PVLPDPPQGP LHVARARASF PWKELALFWE GEDTLRFKKA bmy_21459T0/1-437 MAPLGEGSDD PLLPDLPRGP LHAARARASF PWKELXLFWE GPDMLRFKKN BACU004152/1-661 ---------- ---------- ---------- ---------- ---MLRFKKN 101 150 ENSP00000348775/1-700 IFSALENDPL FARSPGADLS LEKYRELNFL RCKRIFEYDF LSVEDMFKSP ENSTTRP00000013616/1-699 IFSALENDPL FAHPPGS-LS LEKYRELNFL RCKRVFEYDF LRVEDLLGNP ENSBTAP00000041634/1-633 IFSALENDPL FAHPRGSRLS VEKYQELNFL RCKRVFEYDF LPVGDMLDSL bmy_21459T0/1-437 IFSALENDPL FAHPPGS-LS LEKYRELNFL RCKRVFEYDF LRVEDLLGSP BACU004152/1-661 IFSALENDPL FAHPPGS-LS LEKYRELNFL RCKRVFEYDF LRVEDLLGSP 151 200 ENSP00000348775/1-700 LKVPALIQCL GMYDSSLAAK YLLHSLVFGS AVYSSGSERH LTYIQKIFRM ENSTTRP00000013616/1-699 LRVLALIQCL GMYDWSLATK FFLHTLTFGS AIYTSGSERH FKYLPKIFNM ENSBTAP00000041634/1-633 PRVLALIECL GMYDWSLAVK FFLHVLTFGS AIYSSGSERH LKYLPKIFSL bmy_21459T0/1-437 QRVLALIQCL GMYDWSLATK FFLHTLTFGS AIYNSGSERH FKYLPKIFNM BACU004152/1-661 QRVLALIQCL GMYDWSLATK FFLHTLTFGS AIYSSGSERH FKYLPKIFSM 201 250 ENSP00000348775/1-700 EIFGCFALTE LSHGSNTKAI RTTAHYDPAT EEFIIHSPDF EAAKFWVGNM ENSTTRP00000013616/1-699 EIFGCFALTE VSHGSDTKAM RTTAHYDPTT EELIIHSPDF EAAKFWVGNL ENSBTAP00000041634/1-633 EIFGCFALTE VSHGSNTKGI RTTAHYDPST QEFIIHSPDF EAAKFWVGNM bmy_21459T0/1-437 EIFGCFALTE VSHGSNTKAM RTTAHYDATT EELIIHSPDF EAAKFWVGNM BACU004152/1-661 EIFGCFALTE VSHGSNTKAM RTTAHYDPTT EEIIIHSPDF EAAKFWVGNM 251 300 ENSP00000348775/1-700 GKTATHAVVF AKLCVPGDQC HGLHPFIVQI RDPKTLLPMP GVMVGDIGKK ENSTTRP00000013616/1-699 GKTATHAVVF AQLYTPGGQC HGLHPFVVQI RDPKTLLPMP GVMVGDIGRK ENSBTAP00000041634/1-633 GKTATHAVVF AQLYTPGGQC HGLHPFLVQI RDPKTLLPMP GVMVGDIGKK bmy_21459T0/1-437 GKTATHAVVF AQLYTPGGQC HGLHPFVVQI RDPKTLLPMP GVMVGDIGKK BACU004152/1-661 GKTATHAVVF AQLYTPGGQC HGLHPFVVQI RDPKTLLPMP GVMVGDIGKK 301 350 ENSP00000348775/1-700 LGQNGLDNGF AMFHKVRVPR QSLLNRMGDV TPEGTYVSPF K--------- ENSTTRP00000013616/1-699 LGQNGLDNGF AMFHKVRIPR QDLLNRSGDI TPEGTYVTHV K--------- ENSBTAP00000041634/1-633 LGQNGLDNGF AMFHKVRIPR QDLLNRSGDV TPEGAYVTHV K--------- bmy_21459T0/1-437 LGQNGLDNGF AMFHKVRIPR QDLLNRSGDI TPEGTYVTHV KMNKGAPLHV BACU004152/1-661 LGQNGLDNGF AMFHKVRIPR QDLRNRSX-- ---------- ---------- 351 400 ENSP00000348775/1-700 ---------- ---------- -DVRQRFGAS LGSLSSGRVS IVSLAILNLK ENSTTRP00000013616/1-699 ---------- ---------- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041634/1-633 ---------- ---------- -DVGQRFSES LGSLSSGRVA IVGMSVVNLK bmy_21459T0/1-437 CAHPQGSLRV PGPPSPAFLL QDARQHFSES LGSLSSGRVA IAGMSVVNLK BACU004152/1-661 ---------- ---------- -DARQHFSES LGSLSSGRVA IAGMSVVNLK 401 450 ENSP00000348775/1-700 LAVAIALRFS ATRRQFGPTE EEEIPVLEYP MQQWRLLPYL AAVYALDHFS ENSTTRP00000013616/1-699 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXQWRLLPYL AAAYALDHFS ENSBTAP00000041634/1-633 LAVSIALRFS ATRRQFGPTD KEEVPVLQYP MQQWRLLPYL AAAYALDHFF bmy_21459T0/1-437 LAVSIALRFS ATRRQFGPTD KEEVPVLEYP MQ-------- ---------- BACU004152/1-661 LAVSIALRFS ATRRQFGPTD EEEAPVLEYP MQQWRLLPYL AAAYALDHFS 451 500 ENSP00000348775/1-700 KSLFLDLVEL QRGLASGDRS ARQAELGREI HALASASKPL ASWTTQQGIQ ENSTTRP00000013616/1-699 KSLFLDLVEL QQGLLGKDRS ARQAELGREI HALASAGKPL ASWTAQRGIQ ENSBTAP00000041634/1-633 KSLFLDLGEL QQGLLGKDRS VRQAELGREI HALSSAGKPL ASWTAQRGIQ bmy_21459T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU004152/1-661 KWLFLDLAEL QQGLLGRDRS ARQAELGREI HALASAGKPL ASWTAQRGIQ 501 550 ENSP00000348775/1-700 ECREACGGHG YLAMNRLGVL RDDNDPNCTY EGDNNILLQQ TSNYLLGLLA ENSTTRP00000013616/1-699 ECREACGGHG YLAXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041634/1-633 ECREACGGHG YLAMNRLGDL RDDNDPNCTY EGDNSVLLQQ TSRYLLGLLA bmy_21459T0/1-437 ---------- ---------- ---------- -----VQLPQ A--------- BACU004152/1-661 ECREACGGHG YLAMNRLGDL RDDNDPNCTY EGDNNVLLQQ TSNYLLGLLV 551 600 ENSP00000348775/1-700 HQVHDGACFR SPLKSVDFLD AYPGILDQKF EVSSVADCLD SAVALAAYKW ENSTTRP00000013616/1-699 XXXXXGARIE SPLKTVDFLE AYPNLLGHGF EASSPEDCLD SSVPLAAYEW ENSBTAP00000041634/1-633 HRGPGGARIE SPLKTVDFLD GYADILGRRF EGSSPEDLLD SSVPLAAYEW bmy_21459T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU004152/1-661 RRDQGGARIE SPLKTVDFLE AYPNILGHRF EGCSPEDCLN SSVPLAAYEW 601 650 ENSP00000348775/1-700 LVCYLLRETY QKLNQEKRSG SSDFEARNKC QVSHGRPLAL AFVELTVVQR ENSTTRP00000013616/1-699 LVCYLLRESY QKLNQEKQSG SNDFEARNNC QVYCCRPLAL AFLELTVVRR ENSBTAP00000041634/1-633 LVCYLLRESH QKLSREKRSG KSDFEAINDC QVYHCRPLAL AFLELTVVRR bmy_21459T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU004152/1-661 LVCYLLRESY QKLNQEKQSG SNDFEARNNC QVYCCRPLAL ASLELTVVRR 651 700 ENSP00000348775/1-700 FHEHVHQPSV PPSLRAVLGR LSALYALWSL SRHAALLYRG GYFSGEQAGE ENSTTRP00000013616/1-699 FHEHVHQPDV PPPLRAVLGR LSALYALWSL NQHTALLYRG GYFSGEQAGK ENSBTAP00000041634/1-633 FHEHTHQPRV PPPLRAVLRR LSALYALWSL SQHTALLYRG GYFSGERAGK bmy_21459T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU004152/1-661 FHEHMHQPHV PPPLRAVLGR LSALYALWSL NQHTALLYRG GYFSGEQAGK 701 750 ENSP00000348775/1-700 VLESAVLALC SQLKDDAVAL VDVIAPPDFV LDSPIGRADG ELYKNLWGAV ENSTTRP00000013616/1-699 MVENAILALC AQLKDDAVAL VDVIAPPDSI LNSPIGRADG ELYKNLWSAV ENSBTAP00000041634/1-633 VLESAILALC AQV------- ---------- ---------- ---------- bmy_21459T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU004152/1-661 MVENAILALC AQLKDDSVAL VDVIAPPDFI LDSPIGRADG EPARGSLAPL 751 800 ENSP00000348775/1-700 LQESKVLERA SWWPEFSVNK PVIGSLKSKL ---------- -------- ENSTTRP00000013616/1-699 LQQSKVLERA SWWSEFSANK PVLGSLKSKL ---------- -------- ENSBTAP00000041634/1-633 ---------- ---------- ---------- ---------- -------- bmy_21459T0/1-437 ---------- ---------- ---------- ---------- -------- BACU004152/1-661 FPLLPTLRSD GLESRPCQTA ALMELCTCTC PTPEMAPKSL PASPAHAA