KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:18 2014 Check: 00 .. Name: BACU007265/1-900 Len: 907 Check: 3666 Weight: 1.00 Name: ENSTTRP00000002954/1-532 Len: 907 Check: 4990 Weight: 1.00 Name: ENSP00000327025/1-518 Len: 907 Check: 3430 Weight: 1.00 Name: ENSBTAP00000041645/1-506 Len: 907 Check: 3781 Weight: 1.00 Name: bmy_18544T0/1-518 Len: 907 Check: 9546 Weight: 1.00 // 1 50 BACU007265/1-900 MKKCEDGSWE R-------LP SYKSKYTQKS EDFKTYFLDS KLVKEQLSQA ENSTTRP00000002954/1-532 ----GRLGAE RPAPTAICAP SLEHPLRR-- ---------- ---------- ENSP00000327025/1-518 --------MD R-------AP QRQHRASR-- ---------- ---------- ENSBTAP00000041645/1-506 --------MD R-------AP QRHHRASQ-- ---------- ---------- bmy_18544T0/1-518 --------MD R-------AP QRHHRASQ-- ---------- ---------- 51 100 BACU007265/1-900 QLFTRGYEDG LGFEYVIFYN DDEKRTVCLF QGGPYLQGVP GFLHGGAIAT ENSTTRP00000002954/1-532 ---------- ---------- ---------- ------TGSP GQSHDSVMRT ENSP00000327025/1-518 ---------- ---------- ---------- ------ELLA AKKTHT---S ENSBTAP00000041645/1-506 ---------- ---------- ---------- ------ELLA AKKTHT---S bmy_18544T0/1-518 ---------- ---------- ---------- ------ELLA AKKTHT---S 101 150 BACU007265/1-900 MIDATVGMCA AIPGGIVMTA NLNINFKRPI PLCSVVVINS QLDKIEGRKL ENSTTRP00000002954/1-532 QIEV------ ---------- ---------I P--------- ---------- ENSP00000327025/1-518 QIEV------ ---------- ---------I P--------- ---------- ENSBTAP00000041645/1-506 QIEV------ ---------- ---------I P--------- ---------- bmy_18544T0/1-518 QIEV------ ---------- ---------I P--------- ---------- 151 200 BACU007265/1-900 FLSCNVRSVD EKILYSEATG QSCYAFMPKQ HLPPPQVLGG TLDQVSRFCQ ENSTTRP00000002954/1-532 ---CKI---- ---------- ---------- ---------- --------CG ENSP00000327025/1-518 ---CKI---- ---------- ---------- ---------- --------CG ENSBTAP00000041645/1-506 ---CKI---- ---------- ---------- ---------- --------CG bmy_18544T0/1-518 ---CKI---- ---------- ---------- ---------- --------CG 201 250 BACU007265/1-900 EKTDLKNYTL PNASWCPDML NLYHEFLEKT KADGWIRLPS FKSNRNHIQG ENSTTRP00000002954/1-532 DKS------- ---------- ---------- ---------- ---------- ENSP00000327025/1-518 DKS------- ---------- ---------- ---------- ---------- ENSBTAP00000041645/1-506 DKS------- ---------- ---------- ---------- ---------- bmy_18544T0/1-518 DKS------- ---------- ---------- ---------- ---------- 251 300 BACU007265/1-900 LKLPLALTVT SDKSDCRIFT RCIKMEGQGY EYVIFFHPSK KSVCLFQPGP ENSTTRP00000002954/1-532 ---------- ---------- ---------- ---------- ---------- ENSP00000327025/1-518 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041645/1-506 ---------- ---------- ---------- ---------- ---------- bmy_18544T0/1-518 ---------- ---------- ---------- ---------- ---------- 301 350 BACU007265/1-900 SLEGPQDGGG VVPALALLPA RTPRFAHGGS LAAMIDETFS ETAYLAGEGL ENSTTRP00000002954/1-532 ---------- ---------- ---------- ---------- ---------- ENSP00000327025/1-518 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041645/1-506 ---------- ---------- ---------- ---------- ---------- bmy_18544T0/1-518 ---------- ---------- ---------- ---------- ---------- 351 400 BACU007265/1-900 FTLNLSIRFK NLIRVGSLAV LNVDVEKIED QKLYISCVAQ SADRQTVYAK ENSTTRP00000002954/1-532 ---------- ---------- ---------- ---------- ---------- ENSP00000327025/1-518 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041645/1-506 ---------- ---------- ---------- ---------- ---------- bmy_18544T0/1-518 ---------- ---------- ---------- ---------- ---------- 401 450 BACU007265/1-900 ASDSGIGLMI ITAAIIIYSL AQGMHRVCRE GVSVGFFRRS QQCNVAYSCT ENSTTRP00000002954/1-532 ---SGIHYGV ITC------- ---------E GCK-GFFRRS QQCNVAYSCT ENSP00000327025/1-518 ---SGIHYGV ITC------- ---------E GCK-GFFRRS QRCNAAYSCT ENSBTAP00000041645/1-506 ---SGIHYGV ITC------- ---------E GCK-GFFRRS QQCNVAYSCT bmy_18544T0/1-518 ---SGIHYGV ITC------- ---------E GCK-GFFRRS QQCNVAYSCT 451 500 BACU007265/1-900 RQQNCPIDRT SRNRCQHCRL QKCLALGMSR DAVKFGRMSK KQRDSLHAEV ENSTTRP00000002954/1-532 RQQNCPIDRT SRNRCQHCRL QKCLALGMSR DAVKFGRMSK KQRDSLHAEV ENSP00000327025/1-518 RQQNCPIDRT SRNRCQHCRL QKCLALGMSR DAVKFGRMSK KQRDSLHAEV ENSBTAP00000041645/1-506 RQQNCPIDRT SRNRCQHCRL QKCLALGMSR DAVKFGRMSK KQRDSLHAEV bmy_18544T0/1-518 RQQNCPIDRT SRNRCQHCRL QKCLALGMSR DAVKFGRMSK KQRDSLHAEV 501 550 BACU007265/1-900 QKQLQQRQQQ QREQAAKTPP AGAQGADPLA CTLGLPDGQL PLGSSPDLPE ENSTTRP00000002954/1-532 QKQLQQRQQQ QREQAAKTPP AGAQGADPLA CTLGLPDGQL PLGSSPDLPE ENSP00000327025/1-518 QKQLQQRQQQ QQEPVVKTPP AGAQGADTLT YTLGLPDGQL PLGSSPDLPE ENSBTAP00000041645/1-506 QKQLQQRQQQ QREQAAKTPP MGAQGADTLA CTLGLPDGQL PLGSSPDLPE bmy_18544T0/1-518 QKQLQQRQQQ QREQAAKTPP AGAQGADTLA CTLGLPDGQL PLGSSPDLPE 551 600 BACU007265/1-900 ASACPPSLLR APGCGPSYSN SLAKAGLNGA SYHLEYSPER GKAGGRENCY ENSTTRP00000002954/1-532 ASACPPSLLR APGCGPSYSN SLAKAGLNGA SYHLEYSPER GKTDGRENCY ENSP00000327025/1-518 ASACPPGLLK ASGSGPSYSN NLAKAGLNGA SCHLEYSPER GKAEGRESFY ENSBTAP00000041645/1-506 ASACPPSLLR APGCGPSYSN SLAKTGLNGA SYHLEYSPER GKAEGRENFY bmy_18544T0/1-518 ASACPPSLLR APGCGPSYSN SLAKAGLNGA SYHLEYSPER GKAGGRENCY 601 650 BACU007265/1-900 GTGSQPAPDR CGLHFEDPRH PGLGEPGRGP DSYFSPSFRS TPEAPYASLT ENSTTRP00000002954/1-532 GSGSQPTPDR CGLHFEDPRH PGLGEPGRGP DSYFSPSFRS TPEAPYASLT ENSP00000327025/1-518 STGSQLTPDR CGLRFEEHRH PGLGELGQGP DSYGSPSFRS TPEAPYASLT ENSBTAP00000041645/1-506 GIGSQLAPDR GGLHSEDPRR PGLGEPGRGL DSYFTPSFRS TPEVPYASLT bmy_18544T0/1-518 GTGSQPAPDR CGLHFEDPRH PGLGQPGRGP DSYFSPSFRS TPEAPYASLT 651 700 BACU007265/1-900 EIEHLVQNVC KSYRETCQLR LEDLLGQRST VFSREEVAGY QRKSMWEMWE ENSTTRP00000002954/1-532 EIEHLVQNVC KSYRETCQLR LEDLLGQRST VFSREEVAGY QRKSMWEMWE ENSP00000327025/1-518 EIEHLVQSVC KSYRETCQLR LEDLLRQRSN IFSREEVTGY QRKSMWEMWE ENSBTAP00000041645/1-506 EIEHLVQNVC KSYRDTCQLR LEDLLRQRSN IFSREEVAGY QRKSMWEMWG bmy_18544T0/1-518 EIEHLVQNVC KSYRETCQLR LEDLLGQRST VFSREEVAGY QRKSMWEMWE 701 750 BACU007265/1-900 RCAHRLTEAI QYVVEFAKRL SGFMELCQND QIVLLKAGAM EVVLVRMCRA ENSTTRP00000002954/1-532 RCAHRLTEAI QYVVEFAKRL SGFMELCQND QIVLLKAGAM EVVLVRMCRA ENSP00000327025/1-518 RCAHHLTEAI QYVVEFAKRL SGFMELCQND QIVLLKAGAM EVVLVRMCRA ENSBTAP00000041645/1-506 RCAHRLTEAI QYVVEFAKRL PGFMELCQND QIVLLKAGAM EVVLVRMCRA bmy_18544T0/1-518 RCAHRLTEAI QYVVEFAKRL SGFMELCQND QIVLLKAGAM EVVLVRMCRA 751 800 BACU007265/1-900 YNADNHTVFF EGKXXXXXXX XXXXXXXRAL GCSELISSIF DFSHSLSALH ENSTTRP00000002954/1-532 YNADNHTVFF EGK------- YGGMELFRAL GCSELISSIF DFSHSLSXXX ENSP00000327025/1-518 YNADNRTVFF EGK------- YGGMELFRAL GCSELISSIF DFSHSLSALH ENSBTAP00000041645/1-506 YNADNDTVFF E--------- ---------- GCSELISSIF DFSRSLSALR bmy_18544T0/1-518 YNADNHTVFF EGK------- YGGMELFRAL GCSELISSIF DFSHSLSALH 801 850 BACU007265/1-900 FSEDEIALYT ALVLINANRP GLQEKRKVEQ LQYNLELAFH HHLCKTHRHG ENSTTRP00000002954/1-532 XXXXXXXXXX XXXXXXXXRP GLQEKRKVEQ LQYSLELAFH HHLCKTHRHS ENSP00000327025/1-518 FSEDEIALYT ALVLINAHRP GLQEKRKVEQ LQYNLELAFH HHLCKTHRQS ENSBTAP00000041645/1-506 FSEDEIALYT ALVLINANRP GLQEKRKVEQ LQCNLELAFH HHLCKTHRQG bmy_18544T0/1-518 FSEDEIALYT ALVLINANRP GLQEKRKVEQ LQYNLELAFH HHLCKTHRHG 851 900 BACU007265/1-900 ILAKLPPKGK LRSLCSQHVE KLQTFQHLHP IVVQAAFPPL YKELFSTEIE ENSTTRP00000002954/1-532 ILAKLPPKGK LRSLCSQHVE KLQTFQHLHP IVVQAAFPPL YKELFSTEIE ENSP00000327025/1-518 ILAKLPPKGK LRSLCSQHVE RLQIFQHLHP IVVQAAFPPL YKELFSTETE ENSBTAP00000041645/1-506 ILAKLPPKGK LRSLCSQHVE KLQTFQHLHP IVVQAAFPPL YKELFSTEIE bmy_18544T0/1-518 ILAKLPPKGK LRSLCSQHVE KLQTFQHLHP IVVQAAFPPL YKELFSTEIE 901 950 BACU007265/1-900 APEGLSK ENSTTRP00000002954/1-532 SPEGLSK ENSP00000327025/1-518 SPVGLSK ENSBTAP00000041645/1-506 SPEGLSK bmy_18544T0/1-518 SPEGLSK