KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:20 2014 Check: 00 .. Name: ENSTTRP00000015560/1-1106 Len: 1143 Check: 9322 Weight: 1.00 Name: ENSP00000445952/1-1114 Len: 1143 Check: 6024 Weight: 1.00 Name: ENSBTAP00000041673/1-1106 Len: 1143 Check: 8915 Weight: 1.00 Name: bmy_03930T0/1-1017 Len: 1143 Check: 1901 Weight: 1.00 Name: BACU008129/1-1125 Len: 1143 Check: 8454 Weight: 1.00 // 1 50 ENSTTRP00000015560/1-1106 MDRSPGD--- ---RPSPVDQ PYVPSDPXXX XXXXXXXXXX XXXXXXXXXX ENSP00000445952/1-1114 MERSPGE--- -GPSPSPMDQ PSAPSDPTDQ PPAAHAKPDP GSGGQPAGPG ENSBTAP00000041673/1-1106 MEPSLGDSSS SSPSPSPVDQ PYPPSEPPDQ PTTAHAKPEQ SSGDQPAGPG bmy_03930T0/1-1017 MDRSPGD--- ---RPSAVDQ PYAPSDPPDQ PPTAHAKLDQ SSGNQPAGPG BACU008129/1-1125 MDRSPGD--- ---RPSAVDQ PYAPSDPPDQ PPTAHAKLDQ SSGNQPAGPG 51 100 ENSTTRP00000015560/1-1106 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXGLA LYLGWRRVRE ENSP00000445952/1-1114 AAGEALAVLT SFGRRLLVLI PVYLAGAVGL SVGFVLFGLA LYLGWRRVRD ENSBTAP00000041673/1-1106 AAGEALAVLT SFGRRLLVLV PVYLAGAMGL SVGFVLFGLA LYLGWRRVRE bmy_03930T0/1-1017 AAGEALAVLT SFGRRLLVLV PVYLAGAIGL SVGFVLFGLA LYLGWRRVRE BACU008129/1-1125 AAGEALAVLT SFGRRLLVLV PVYLAGAIGL SVGFVLFGLA LYLGWRRVRE 101 150 ENSTTRP00000015560/1-1106 EKERS-RVAR QLLDDEERLT TKTLYMSHRE LPAWVSFPDV EKAEWLNKIV ENSP00000445952/1-1114 EKERSLRAAR QLLDDEEQLT AKTLYMSHRE LPAWVSFPDV EKAEWLNKIV ENSBTAP00000041673/1-1106 EKERSLRVAR QLLDDEERLT AKTLYMSHRE LPAWVSFPDV EKAEWLNKIV bmy_03930T0/1-1017 EKERSLRVAR RLLDDEERLT AKTLYMSHRE LPAWVSFPDV EKAEWLNKIV BACU008129/1-1125 EKERSLRVAR QLLDDEERLT AKTLYMSHRE LPAWVSFPDV EKAEWLNKIV 151 200 ENSTTRP00000015560/1-1106 AQVWPFLGQY MEKLLAETVA PAVRGSNPHL QTFTFTRVEL GEKPLRI-RV ENSP00000445952/1-1114 AQVWPFLGQY MEKLLAETVA PAVRGSNPHL QTFTFTRVEL GEKPLRIIGV ENSBTAP00000041673/1-1106 AQVWPFLGQY MEKLLAETVA PAVRGSNPHL QTFTFTRVEL GEKPLRILGV bmy_03930T0/1-1017 AQVWPFLGQY MEKLLAETVA PAVRGSNPHL QTFTFTRVEL GEKPLRIIGV BACU008129/1-1125 AQVWPFLGQY MEKLLAETVA PAVRGSNPHL QTFTFTRVEL GEKPLRIIGV 201 250 ENSTTRP00000015560/1-1106 RVHPAQRKEQ ILLDLNITXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000445952/1-1114 KVHPGQRKEQ ILLDLNISYV GDVQIDVEVK KYFCKAGVKG MQLHGVLRVI ENSBTAP00000041673/1-1106 KVHTGQSKKQ ILLDLNISYV GDLQIDVEVK KYFCKAGVKG MQLHGVLRVI bmy_03930T0/1-1017 RVHPGQRKEQ ILLDLNISYI GDVQIDVEVK KYFCKAGVKG MQLQGVLRVI BACU008129/1-1125 RVHPGQRKDQ ILLDLNISYV GDVQIDVEVK KYFCKAGVKG MQLQGVLRVI 251 300 ENSTTRP00000015560/1-1106 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XSLSDTMIMD ENSP00000445952/1-1114 LEPLIGDLPF VGAVSMFFIR RPTLDINWTG MTNLLDIPGL SSLSDTMIMD ENSBTAP00000041673/1-1106 LEPLMGDLPI VGAVSMFFIR RPTLDINWTG MTNLLDIPGL SSLSDTMIMD bmy_03930T0/1-1017 LEPLIGNLPI VGAVSMFFIR RPVRENVEEG ---------- -SLSDTMIMD BACU008129/1-1125 LEPLIGNLPI VGAVSMFFIR RPALDINWTG MTNLLDIPGL SSLSDTMIMD 301 350 ENSTTRP00000015560/1-1106 SIAAFLVLPN RLLVPLVPDL QDVAQLRSPL PRGIIRIHLL AARGLSSKDK ENSP00000445952/1-1114 SIAAFLVLPN RLLVPLVPDL QDVAQLRSPL PRGIIRIHLL AARGLSSKDK ENSBTAP00000041673/1-1106 SIAAFLVLPN RLLVPLVPDL QDVAQLRSPL PRGIIRIHLL AARGLSSKDK bmy_03930T0/1-1017 SIAAFLVLPN RLLVPLVPDL QDVAQLRSPL PRGIIRIHLL AARGLSSKDK BACU008129/1-1125 SIAAFLVLPN RLLVPLVPDL QDVAQLRSPL PRGIIRIHLL AARGLSSKDK 351 400 ENSTTRP00000015560/1-1106 YVKGLIEGKS DPYALVRVGT QTFCSRVIDE ELNPQWGETY EVMVHEVPGQ ENSP00000445952/1-1114 YVKGLIEGKS DPYALVRLGT QTFCSRVIDE ELNPQWGETY EVMVHEVPGQ ENSBTAP00000041673/1-1106 YVKGLIEGKS DPYALVRVGT QAFCSRVINE ELNPQWGETY EVMVHEVPGQ bmy_03930T0/1-1017 YVKGLIEGKS DPYALVRVGT QTFCSRVIDE ELNPQWGETY EVMVHEVPGQ BACU008129/1-1125 YVKGLIEGKS DPYALVRVGT QTFCSRVIDE ELNPQWGETY EVMVHEVPGQ 401 450 ENSTTRP00000015560/1-1106 EIEVEVFDKD PDKDDFLG-- ---------- -----RMKLD V------GKV ENSP00000445952/1-1114 EIEVEVFDKD PDKDDFLG-- ---------- -----RMKLD V------GKV ENSBTAP00000041673/1-1106 EIEVEVFDKD PDKDDFLG-- ---------- -----RMKLD V------GKV bmy_03930T0/1-1017 EIEVEVFDKD PDKDDFLG-- ---------- -----RMKLD V------GKV BACU008129/1-1125 EIEVEVFDKD PDKDDFLGST PLFFLSLPSS PPPPPKMKMD VGXXXXXGKV 451 500 ENSTTRP00000015560/1-1106 LQAGVMDEWF PLQSGQGQVH LRLEWLSLLP DAEKLEQVLQ WNRGVSSHPE ENSP00000445952/1-1114 LQASVLDDWF PLQGGQGQVH LRLEWLSLLS DAEKLEQVLQ WNWGVSSRPD ENSBTAP00000041673/1-1106 LQAGVMDEWF PLQGGQGQVH LRLEWLSLLP DAEKLEQILQ WNRGVSSRPE bmy_03930T0/1-1017 LQAGVMDEWF PLQSGQGQVH LRLEWLSLLP DAEKLEQVLQ WNRGVSSXPE BACU008129/1-1125 LQAGVMDEWF PLQSGQGQVH LRLEWLSLLP DAEKLEQVLQ WNRGVSSRPE 501 550 ENSTTRP00000015560/1-1106 PPSAAILVVY LDRAQDLPIV TSEFYPPQLK KGNKEPNPMV QLSIQDVTQE ENSP00000445952/1-1114 PPSAAILVVY LDRAQDLPMV TSELYPPQLK KGNKEPNPMV QLSIQDVTQE ENSBTAP00000041673/1-1106 PPSAAILVVY LDRAQDLP-- --------LK KGNKEPNPMV QLSIQDVTQE bmy_03930T0/1-1017 PPSAAILVVY LDRAQDLP-- --------LK KGNKEPNPMV QLSIQDVTQE BACU008129/1-1125 PPSAAILVVY LDRAQDLP-- --------LK KGNKEPNPMV QLSIQDVTQE 551 600 ENSTTRP00000015560/1-1106 SKAVYNTNCP VWEAAFRFFL QDPRSQELDV QVKDDSRSLT LGALTLPLAR ENSP00000445952/1-1114 SKAVYSTNCP VWEEAFRFFL QDPQSQELDV QVKDDSRALT LGALTLPLAR ENSBTAP00000041673/1-1106 SKAVYSTNCP VWEQAFRFFL QDPQSQELDV QVKDDSRALT LGALTLPLAR bmy_03930T0/1-1017 SKAVYNTNGP VWEEAFRFFL QDPXSQELDV QVKDDSRALT LGALTLPLAR BACU008129/1-1125 SKAVYNTNGP VWEEAFRFFL QDPRSQELDV QVKDDSRALT LGALTLPLAR 601 650 ENSTTRP00000015560/1-1106 LLTAPELTLD QWFQLSSSGP NSRLYMKLVM RLLYLDSSEV RFPAVPSTPG ENSP00000445952/1-1114 LLTAPELILD QWFQLSSSGP NSRLYMKLVM RILYLDSSEI CFPTVPGCPG ENSBTAP00000041673/1-1106 LLTAPELTLD QWFQLSSSGL NSRLYMKLVM RLLYLDTSEV RFPAMPGIPG bmy_03930T0/1-1017 LLTAPELTLD QWFQLSSSGP NSRLYMKLVM RLLYLDSSEV RFPAVPGTPE BACU008129/1-1125 LLTAPELTLD QWFQLSSSDP NSRLYMKLVM RLLYLDSSEV RFPAVPGTPE 651 700 ENSTTRP00000015560/1-1106 AWDLDDESPQ T--GSSVDAP PRPSHTTPDS NFGTENVLRI HVLEAQDLIA ENSP00000445952/1-1114 AWDVDSENPQ R--GSSVDAP PRPCHTTPDS QFGTEHVLRI HVLEAQDLIA ENSBTAP00000041673/1-1106 AWDLDD-SPQ T--GSSVDVP PRPCHTTPDS SFGTENVLRL HVLEAQDLIA bmy_03930T0/1-1017 AWDLDDEGSQ TLRGSSVDAP PRPSHTTPDS NFGTENVLRI HVLEAQDLIA BACU008129/1-1125 AWDLDDEGPQ T--GSSVDAP PRPSHTTPDG NFGTENVLRI HVLEAQDLIA 701 750 ENSTTRP00000015560/1-1106 KDRFLGGLVK GKSDPYVKLK LGGRSFRSRV VREDLNPRWN EVFEVIVTSI ENSP00000445952/1-1114 KDRFLGGLVK GKSDPYVKLK LAGRSFRSHV VREDLNPRWN EVFEVIVTSV ENSBTAP00000041673/1-1106 KDRFLGGLVK GKSDPYVKLK LAGRSFHSRV VREDLNPRWN EIFEVIVTSI bmy_03930T0/1-1017 KDRFLGGLVK GKSDPYVKLK LGGRSFRSRV VREDLNPRWN EVFEVIVTSI BACU008129/1-1125 KDRFLGGLVK GKSDPYVKLK LGGRSFRSRV VQEDLNPRWN EVFEVIVTSI 751 800 ENSTTRP00000015560/1-1106 PGQELEVEVF DKDLDKDDFL GRCKVSLTTV LNNGFLDEWL TLEDVPSGRL ENSP00000445952/1-1114 PGQELEVEVF DKDLDKDDFL GRCKVRLTTV LNSGFLDEWL TLEDVPSGRL ENSBTAP00000041673/1-1106 PGQELEVEVF DKDLDKDDFL GRCKVSLTTV LNSGFLDEWL TLEDVPSGRL bmy_03930T0/1-1017 PGQELEVEVF DKDLDKDDFL GRCKVSLTTV LDNGFLDEWL TLEDVPSGRL BACU008129/1-1125 PGQELEVEVF DKDLDKDDFL GRCKVSLTTV LDNGFLDEWL TLEDVPSGRL 801 850 ENSTTRP00000015560/1-1106 HLCLERLTPR PTAAELEEVL QVNSLIQTQK SAELAAALLS VYLERAEDLP ENSP00000445952/1-1114 HLRLERLTPR PTAAELEEVL QVNSLIQTQK SAELAAALLS IYMERAEDLP ENSBTAP00000041673/1-1106 HLRLERLTPR PTAAELEEVL QVNSLIQTQK SAELAAALLS VYLERAEDLP bmy_03930T0/1-1017 HLRLERLTPR PTAAELEEVL QVNSLIQTQK STELAAALLS VYLERAEDLP BACU008129/1-1125 HLRLERLTPR PTAAELEEVL QVNSLIQTQK STELAAALLS VYLERAEDLP 851 900 ENSTTRP00000015560/1-1106 LRKGTKPPSP YATIAVGDTS HKTKTVSQTS APVWDESASF LIRKPNSESL ENSP00000445952/1-1114 LRKGTKHLSP YATLTVGDSS HKTKTISQTS APVWDESASF LIRKPHTESL ENSBTAP00000041673/1-1106 LRKGTKPPSP YATLAVGDTS HKTKTVPQTA TPVWNESASF LIRKPNTESL bmy_03930T0/1-1017 LRKGTKPPSP YATLAVGDTS HKTK------ ---------- ---------- BACU008129/1-1125 LRKGTKPPSP YATLAVGDTS HKTKTVSQTS APVWDESASF LIRKPHFESL 901 950 ENSTTRP00000015560/1-1106 ELQVQGEGTG ALGSLSLPLS ELLVADRLCL DHWFTLSNGP GQVLLRAQLR ENSP00000445952/1-1114 ELQVRGEGTG VLGSLSLPLS ELLVADQLCL DRWFTLSSGQ GQVLLRAQLG ENSBTAP00000041673/1-1106 ELQVRGEGSG TLGSLSLPLS ELLVADRLCL DRWFTLINGQ GQVLLRAQLG bmy_03930T0/1-1017 ---------- ---------- ---------- ---------- ---------- BACU008129/1-1125 ELQVRGEGTG ALGSLSLPLS ELLVADQLCL DHWFMLSNGP GQVLLRAQLG 951 1000 ENSTTRP00000015560/1-1106 ILVSQHSGVE A----YSHSS SSLSEEPELW GGLPHITSSA PELRQRLTHS ENSP00000445952/1-1114 ILVSQHSGVE AHSHSYSHSS SSLSEEPELS GGPPHITSSA PELRQRLTHV ENSBTAP00000041673/1-1106 ILVSQHSGVE AHSHSYSHSS SSLS-ELELW SGLPQVTSSA PELRQRLTHS bmy_03930T0/1-1017 ILVSQHSGVE AHSHSYSHSS SSLSEEPELW GGLPHITSPA PELRQRLTHS BACU008129/1-1125 ILVSQHSGVE AHSHSYSHSS SSLSEEPELW GGLPHITSPA PELRQRLTHS 1001 1050 ENSTTRP00000015560/1-1106 DSPLEAPAGP LGQVKLTVWY YSEERKLISI VHSCRALRQN GRDPPDPYVS ENSP00000445952/1-1114 DSPLEAPAGP LGQVKLTLWY YSEERKLVSI VHGCRSLRQN GRDPPDPYVS ENSBTAP00000041673/1-1106 DSPPEAPAGP LGQVKLTVWY HSEERKLVGF IHSCRALRQN GRDPPDPYVS bmy_03930T0/1-1017 DSPLETPAGP LGQVKLTVWY YSEERKLVSI VHSCRALRQN GRDPPDPYVS BACU008129/1-1125 DSPLEAPAGP LGQVKLTVWY YSEERKLVGI VHSCRALRQN GRDPPDPYVS 1051 1100 ENSTTRP00000015560/1-1106 LLLLPDKNRG TKRKSSQKKR TLNPEFDERF EWELPLDEAL RRKLDVSVKS ENSP00000445952/1-1114 LLLLPDKNRG TKRRTSQKKR TLSPEFNERF EWELPLDEAQ RRKLDVSVKS ENSBTAP00000041673/1-1106 LLLLPDKNRG TKRKTSQKKR TLNPEFNERF EWELPLDEAL QRKLDVSVKS bmy_03930T0/1-1017 LLLLPDKNRG TKRKSSQKKR TLNPEFDERF EWEMPLDEAL RRKLDVSVKS BACU008129/1-1125 LLLLPDKNRG TKRKSSQKKR TLNPEFDERF EWEMPLDEAL RRKLDVSVKS 1101 1150 ENSTTRP00000015560/1-1106 SSSFMSRERE LLGKVQLDLT EIDLSQGAAQ WYDLMDDKDK GSS ENSP00000445952/1-1114 NSSFMSRERE LLGKVQLDLA ETDLSQGVAR WYDLMDNKDK GSS ENSBTAP00000041673/1-1106 SSSFMSRERD LLGKVQLDLA EIDLSQGAAQ WYDLMDDKDK GSS bmy_03930T0/1-1017 SSSFMSRERE LLGKVQLDLA EIDLSQGAAQ WYDLMDDKDK GSS BACU008129/1-1125 SSSFMSRERE LLGKVQLDLA EIDLSQGAAQ WYDLMDDKDK GSS