KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:52:21 2014  Check: 00 ..

 Name: ENSP00000434385/1-80      Len:    170  Check:  7856  Weight:  1.00
 Name: ENSBTAP00000041676/1-81   Len:    170  Check:  7561  Weight:  1.00
 Name: ENSTTRP00000007255/1-164  Len:    170  Check:  7913  Weight:  1.00
 Name: bmy_16212T0/1-79          Len:    170  Check:  4083  Weight:  1.00
 Name: BACU019342/1-145          Len:    170  Check:  2197  Weight:  1.00

//


                          1                                                   50
ENSP00000434385/1-80      MKYPLMPLVN DLTFSFLVFW FCLPVGLLL- LLIIWLRFLL SQDSEENDSS 
ENSBTAP00000041676/1-81   MKYPLVPLVN ELTFSFLVFW LCLPVALLLF LLIIWLRFLL SQDSEENDSD 
ENSTTRP00000007255/1-164  -----VPLVN ELTFSFLVFW LCLPVALLLF LLIVWLYFLL SQDSEENDSD 
bmy_16212T0/1-79          MKYPLVPLVN ELTFSFLVFW LCLPVALLLF LLIVWLHFLL SQDSEENDSD 
BACU019342/1-145          MKYPLVPLVN ELTFSFLVFW LCLPVALLLF LLIVWLHFLL SQDSEENASD 


                          51                                                 100
ENSP00000434385/1-80      VCLDWEPWSK GPAEFCWKGT LHGQEKERPC W--------- ---------- 
ENSBTAP00000041676/1-81   VCLDWEPWSK NPDEFCQEEM LHSQEEERPC C--------- ---------- 
ENSTTRP00000007255/1-164  VCFDWEPWSK VPAKFCQK-T LHSQEEERPC YLVFPESAGL QQRPRWMETC 
bmy_16212T0/1-79          VCFDWEPWSK GPAKFCQK-T CHSQEEERPC ---------- ---------- 
BACU019342/1-145          VCFDWEPWSK GPAKFCQK-T SHSQEEERPC YLVFPESAGL RQQPRWM-TH 


                          101                                                150
ENSP00000434385/1-80      ---------- ---------- ---------- ---------- ---------- 
ENSBTAP00000041676/1-81   ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000007255/1-164  QGGERTLVSE LLPRDPRLVS STDGHTNASR PGSSPLQTTS VPPGRSLSLR 
bmy_16212T0/1-79          ---------- ---------- ---------- ---------- ---------- 
BACU019342/1-145          WGGERTLASE VLPRDPRLVS STDGRTNA-R PGSSPLQTT- VPPGRSLSL- 


                          151                                                200
ENSP00000434385/1-80      ---------- ---------- 
ENSBTAP00000041676/1-81   ---------- ---------- 
ENSTTRP00000007255/1-164  SKLALGEKAD TQRPVRAGPR 
bmy_16212T0/1-79          ---------- ---------- 
BACU019342/1-145          ---------- ----------