KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:21 2014 Check: 00 .. Name: ENSP00000302629/1-882 Len: 884 Check: 4674 Weight: 1.00 Name: ENSBTAP00000041677/1-882 Len: 884 Check: 5921 Weight: 1.00 Name: ENSTTRP00000004583/1-799 Len: 884 Check: 287 Weight: 1.00 Name: bmy_19497T0/1-520 Len: 884 Check: 2795 Weight: 1.00 Name: BACU013058/1-520 Len: 884 Check: 2767 Weight: 1.00 // 1 50 ENSP00000302629/1-882 MAVRSRRPWM SVALGLVLGF TAASWLIAPR VAELSERKRR GSSLCSYYGR ENSBTAP00000041677/1-882 MAVRSRRPWM SVALGLVLGF TAASWLIAPR VAELSERKRR GSSLCSYYGR ENSTTRP00000004583/1-799 MAVRSRRPWM SVALGLVLGF TAASWLIAPR VAELSERKRR GSSLCSYYGR bmy_19497T0/1-520 ---------- ---------- ---------- ---------- ---------- BACU013058/1-520 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000302629/1-882 SAAGPRAGAQ QPLPQPQSRP RQEQSPPPAR QDLQGPPLPE AAPGITSFRS ENSBTAP00000041677/1-882 SAAGP--GAQ QPLPEPHARQ WPGQSPPPAR QELRGPQLPE AAPGVTSFRS ENSTTRP00000004583/1-799 SAAGA--GAQ QPLPQPYARQ WPEQSPPPAR QELQGPQLPE AAPGVTSFRS bmy_19497T0/1-520 ---------- ---------- ---------- ---------- ---------- BACU013058/1-520 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000302629/1-882 SPWQQPPPLQ QRRRGREPEG ATGLPGAPAA EGEPEEEDGG AAGQRRDGRP ENSBTAP00000041677/1-882 SPWQQPPPLQ QRRRGREPEG ATGLPGAPVA EGEPEEEDGG AAGHRRSGQP ENSTTRP00000004583/1-799 SPWQQPPPLQ QQRRGREPEG ATGLPGAPVA EGEPEEEDRG AAGKRRGGRP bmy_19497T0/1-520 ---------- ---------- ---------- ---------- ---------- BACU013058/1-520 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000302629/1-882 GSSHNGSGDG GAAAPSARPR DFLYVGVMTA QKYLGSRALA AQRTWARFIP ENSBTAP00000041677/1-882 GSSHNGSGDG GAAASSSRPR DFLYVGVMTA QKYLGSRALA AQRTWARFIP ENSTTRP00000004583/1-799 GSSHNGSGDG GAAAQSSRPR DFLYVGVMTA QKYLGSRALA VQRTWARFIP bmy_19497T0/1-520 ---------- ---------- ---------- ---------- ---------- BACU013058/1-520 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000302629/1-882 GRVEFFSSQQ PPNA--GQPP PPLPVIALPG VDDSYPPQKK SFMMIKYMHD ENSBTAP00000041677/1-882 GRVEFFSSQQ PPNAGVGQPP PPLPVIALPG VDDSYPPQKK SFMMIKYMHD ENSTTRP00000004583/1-799 GRVEFFSSQQ PPNAGLGHPP PPLPVIALPG VDDSYPPQKK SFMMIKYMHD bmy_19497T0/1-520 ---------- ---------- ---------- ---------- ---------- BACU013058/1-520 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000302629/1-882 HYLDKYEWFM RADDDVYIKG DKLEEFLRSL NSSKPLYLGQ TGLGNIEELG ENSBTAP00000041677/1-882 HYLDKYEWFM RADDDIYIKG DKLEEFLRSL NSSKPLYLGQ TGLGNIEELG ENSTTRP00000004583/1-799 HYLDKYEWFM RADDDVYIKG DKLEEFLRSL NSSKPLYLGQ TGLGNIEELG bmy_19497T0/1-520 ---------- ---------- ---------- ---------- ---------- BACU013058/1-520 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000302629/1-882 KLGLEPGENF CMGGPGMIFS REVLRRMVPH IGECLREMYT THEDVEVGRC ENSBTAP00000041677/1-882 KLGLEPGENF CMGGPGMIFS REVLRRMVPH IGECLREMYT THEDVEVGRC ENSTTRP00000004583/1-799 KLGLEPGENF CMGGPGMIFS REVLRRMVPH IGECLREMYT THEDVEVGRC bmy_19497T0/1-520 ---------- ---------- ---------- ---------- ---------- BACU013058/1-520 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000302629/1-882 VRRFGGTQCV WSYEMQQLFH ENYEHNRKGY IQDLHNSKIH AAITLHPNKR ENSBTAP00000041677/1-882 VRRFGGTQCV WSYEMQQLFH ENYEHNRKGY IQDLHNSKIH AAITLHPNKR ENSTTRP00000004583/1-799 VRRFGGTQCV WSYEMQQLFH ENYEHNRKGY IQDLHNSKIH AAITLHPNKR bmy_19497T0/1-520 ---------- ----MQQLFH ENYEHNRKGY IQDLHNSKIH AAITLHPNKR BACU013058/1-520 ---------- ----MQQLFH ENYEHNRKGY IQDLHNSKIH AAITLHPNKR 401 450 ENSP00000302629/1-882 PAYQYRLHNY MLSRKISELR YRTIQLHRES ALMSKLSNTE VSKEDQQLGV ENSBTAP00000041677/1-882 PAYQYRLHNY MLSRKISELR YRTIQLHRES ALMSKLSNSE VSKEDQQLGV ENSTTRP00000004583/1-799 PAYQYRLHNY MLSRKISELR YRTIQLHRES ALMSKLSNSE VSKEDKQLGV bmy_19497T0/1-520 PAYQYRLHNY MLSRKISELR YRTIQLHRES ALMSKLSNSE VSKEDQQLGV BACU013058/1-520 PAYQYRLHNY MLSRKISELR YRTIQLHRES ALMSKLSNSE VSKEDQQLGV 451 500 ENSP00000302629/1-882 IPSFNHFQPR ERNEVIEWEF LTGKLLYSAA ENQPPRQSLS SILRTALDDT ENSBTAP00000041677/1-882 MPSFNHFQPR ERDEVIEWEF LTGKLLYSAS ENQPPRQSIN SILRTALDDT ENSTTRP00000004583/1-799 MPSFNHFQPR ERDEVMEWEF LTGKLLYSAS ENQPPRQSIS SILRTALDDT bmy_19497T0/1-520 MPSFNHFQPR ERDEVIEWEF LTGKLLYSAS ENQPPRQSIS SILRTALDDT BACU013058/1-520 MPSFNHFQPR ERDEVIEWEF LTGKLLYSAS ENQPPRQSIS SILRTALDDT 501 550 ENSP00000302629/1-882 VLQVMEMINE NAKSRGRLID FKEIQYGYRR VNPMHGVEYI LDLLLLYKRH ENSBTAP00000041677/1-882 VLQVMEMINE NAKTRGRLID FKEIQYGYRR VDPMHGVEYI LDLLLLYKRH ENSTTRP00000004583/1-799 VLQVMEMINE NAKSRGRLID FKEIQYGYRR VDPLHGVEYI LDLLLLYKRH bmy_19497T0/1-520 VLQVMEMINE NAKSRGRLID FKEIQYGYRR VDPLHGVEYI LDLLLLYKRH BACU013058/1-520 VLQVMEMINE NAKSRGRLID FKEIQYGYRR VDPLHGVEYI LDLLLLYKRH 551 600 ENSP00000302629/1-882 KGRKLTVPVR RHAYLQQLFS KPFFRETEEL DVNSLVESIN SETQSFSFIS ENSBTAP00000041677/1-882 KGRKLTVPVR RHAYLQQLFS KPFFRETEEL DVNSLVESIN SDTQSFSFIS ENSTTRP00000004583/1-799 KGRKLTVPVR RHAYLQQLFS KPFFRETEEL DVDSLVESIN SDTQSFSFIS bmy_19497T0/1-520 KGRKLTVPVR RHAYLQQLFS KPFFRETEEL DVNSLVESIN SDTQSFSFIS BACU013058/1-520 KGRKLTVPVR RHAYLQQLFS KPFFRETEEL DVNSLVESIN RDTQSFSFIS 601 650 ENSP00000302629/1-882 NSLKILSSFQ GAKEMGGHNE KKVHILVPLI GRYDIFLRFM ENFENMCLIP ENSBTAP00000041677/1-882 NSLKILSSFQ GAKEVGGHSE KKIHILVPLI GRYDTFLRFM ENFENTCLIP ENSTTRP00000004583/1-799 NSLKILSSFQ GAKEMGGPNE KKIHVLVPLI GRYDIFLRFM ENFENTCLIP bmy_19497T0/1-520 NSLKILSSFQ GAKEMGGHNE KKIHVLVPLI GRYDIFLRFM ENFENTCLIP BACU013058/1-520 NSLKILSSFQ GAKEMGGHNE KKIHVLVPLI GRYDIFLRFM ENFENTCLIP 651 700 ENSP00000302629/1-882 KQNVKLVIIL FSRDSGQDSS KHIELIKGYQ NKYPKAEMTL IPMKGEFSRG ENSBTAP00000041677/1-882 KQNVKLVIIL FSKDSGQDSN KHIELIQEYQ NKYPKAEITL IPMKGEFSRG ENSTTRP00000004583/1-799 KQNVKLVIIL FSRDSGQDSS KHIELIQEYQ NKYPKAEMTL IPMKGEFSRG bmy_19497T0/1-520 KQNVKLIIIL FSRDSGQDSS KHIELIQEYQ NKYPKAEMTL IPMKGEFSRG BACU013058/1-520 KQNVKLIIIL FSRDSGQDSS KHIELIREYQ NKYPKAEMTL IPMKGEFSRG 701 750 ENSP00000302629/1-882 LGLEMASAQF DNDTLLLFCD VDLIFREDFL QRCRDNTIQG QQVYYPIIFS ENSBTAP00000041677/1-882 LGLEMGSSQF DNDTLLLFCD VDLIFRGDFL QRCRDNTIQG QQVYYPIIFS ENSTTRP00000004583/1-799 LGLEMGSSQF DNDTLLLFCD VDLIFRGDFL QRCRDNTIQG QQVYYPIIFS bmy_19497T0/1-520 LGLEMGSSQF DNDTLLLFCD VDLIFRGDFL QRCRDNTIQG QQVYYPIIFS BACU013058/1-520 LGLEMGSSQF DNDTLLLFCD VDLIFRGDFL QRCRDNTIQG QQVYYPIIFS 751 800 ENSP00000302629/1-882 QYDPKVTNGG NPPTDDYFIF SKKTGFWRDY GYGITCIYKS DLLGAGGFDT ENSBTAP00000041677/1-882 QYDPKVTNGG SPPTDDDFVF SKKTGFWRDY GYGITCIYKS DLLGAGGFDT ENSTTRP00000004583/1-799 QYDPKVTNGG SPPTDNDFVF SKKTGFWRDY GYGITCIYKS DLLGAGGFDT bmy_19497T0/1-520 QYDPKVTNGG SPPTDNDFVF SKKTGFWRDY GYGITCIYKS DLLGAGGFDT BACU013058/1-520 QYDPKVTNGG SPPTDNDFVF SKKTGFWRDY GYGITCIYKS DLLGAGGFDT 801 850 ENSP00000302629/1-882 SIQGWGLEDV DLYNKVILSG LRPFRSQEVG VVHIFHPVHC DPNLDPKQYK ENSBTAP00000041677/1-882 SIQGWGLEDV DLYNKVILSG LRPFRSQEVG VVHIFHPVHC DPNLDPKQYK ENSTTRP00000004583/1-799 S--------- ---------- ---------- ---------- ---------- bmy_19497T0/1-520 SIQGWGLEDV DLYNKVIRSG LRPFRSQEVG VVHIFHPVHC DPNLDPKQYK BACU013058/1-520 SIQGWGLEDV DLYNKVIRSG LRPFRSQEVG VVHIFHPVHC DPNLDPKQYK 851 900 ENSP00000302629/1-882 MCLGSKASTF ASTMQLAELW LEKHLGVRYN RTLS ENSBTAP00000041677/1-882 MCLGSKASTF ASTVQLAELW LEKHLGVRYN RTLS ENSTTRP00000004583/1-799 ---------- ---------- ---------- ---- bmy_19497T0/1-520 MCLGSKASTF ASTVQLAELW LEKHLGVRYN RTLS BACU013058/1-520 MCLGSKASTF ASTVQLAELW LEKHLGVRYN RTLS