KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:52:23 2014 Check: 00 .. Name: ENSBTAP00000041740/1-1083 Len: 1156 Check: 5287 Weight: 1.00 Name: bmy_16352T0/1-1123 Len: 1156 Check: 1857 Weight: 1.00 Name: BACU008309/1-1081 Len: 1156 Check: 4224 Weight: 1.00 Name: ENSTTRP00000003349/1-1087 Len: 1156 Check: 2566 Weight: 1.00 // 1 50 ENSBTAP00000041740/1-1083 MSDSEDSNFS EEEDSERSSD GEEAEVEEER RSAAGSEKEE EPEEEEEEEE bmy_16352T0/1-1123 -MVSGFGGFS TLVPQPYLT- ---LQVEEER RSAAGSEKEE EPEEEEEEEE BACU008309/1-1081 MSDSEDSNFS EEEDSERSSD GEEAEVEEER RSAAGSEKEE EPEEEEEEEE ENSTTRP00000003349/1-1087 MSDSEDSNFS EEEDSERSSD GEEAEVEEER RSAAGSEKEE EPEEEEEEEE 51 100 ENSBTAP00000041740/1-1083 EEEYDEEEEE EDDDRPPKKP RHGGFILDEA ECAEAYMDSD QWEVCQEDPL bmy_16352T0/1-1123 EEEYDEEEEE EDDDRPPKKP RHGGFILDEA DVDDEYEDED QWEDGAEDIL BACU008309/1-1081 EEEYDEEEEE EDDDRPPKKP RHGGFILDEA DVDDEYEDED QWEDGAEDIL ENSTTRP00000003349/1-1087 EEEYDEEEEE EDDDRPPKKP RHGGFILDEA DVDDEYEDED QWEXXXXXXX 101 150 ENSBTAP00000041740/1-1083 E----KASNI DNVVLDEDRS GARRLQNLWR GAGQPTLLSS TFHSRSLSLT bmy_16352T0/1-1123 E----KASNI DNVVLDEDRS GARRLQNLWR DQREEELGEY YMKKYAKSSV BACU008309/1-1081 E----KASNI DNVVLDEDRS GARRLQNLWR DQREEELGEY YMKKYAKSSV ENSTTRP00000003349/1-1087 XXXEIEASNI DNVVLDEDRS GARRLQNLWR DQREEELGEY YMKKYAKSSV 151 200 ENSBTAP00000041740/1-1083 YPRVYGGSDE LSDDITQQQL LPGVKDPNLW TVKCKIGEER ATAISLMRKF bmy_16352T0/1-1123 GETVYGGSDE LSDDITQQQL LPGVKDPNLW TVKCKIGEER ATAISLMRKF BACU008309/1-1081 GETVYGGSDE LSDDITQQQL LPGVKDPNLW TVKCKIGEER ATAISLMRKF ENSTTRP00000003349/1-1087 GETVYGGSDE LSDDITQQQL LPGVKDPNLW TVKCKIGEER ATAISLMRKF 201 250 ENSBTAP00000041740/1-1083 IAYQFTDTPL QIKSVVAPEH VKGYIYVEAY KQTHVKQAIE GVGNLRLGYW bmy_16352T0/1-1123 IAYQFTDT-- -IKSVVAPEH VKGYIYVEAY KQTHVKQAIE GVGNLRLGYW BACU008309/1-1081 IAYQFTDTPL QIKSVVAPEH VKGYIYVEAY KQTHVKQAIE GVGNLRLGYW ENSTTRP00000003349/1-1087 IAYQFTDTPL QIKSVVAPEH VKGYIYVEAY KQTHVKQAIE GVGNLRLGYW 251 300 ENSBTAP00000041740/1-1083 NQQMVPIKEM TDVLKVVKEV ANLKPKSWVR LKRGIYKDDI AQVDYVEPSQ bmy_16352T0/1-1123 NQQMVPIKEM TDVLKVVKEV ANLKPKSWVR LKRGIYKDDI AQVDYVEPSQ BACU008309/1-1081 NQQMVPIKEM TDVLKVVKEV ANLKPKSWVR LKRGIYKDDI AQVDYVEPSQ ENSTTRP00000003349/1-1087 NQQMVPIKEM TDVLKVVKEV ANLKPKSWVR LKRGIYKDDI AQVDYVEPSQ 301 350 ENSBTAP00000041740/1-1083 NTISLKMIPR IDYDRIKARM SL-------- ---------- ---------- bmy_16352T0/1-1123 NTISLKMIPR IDYDRIKARM SLVSWGRAAG GERGCLIPLL VAKPLSLTLP BACU008309/1-1081 NTISLKMIPR IDYDRIKARM SL-------- ---------- ---------- ENSTTRP00000003349/1-1087 NTISLKMIPR IDYDRIKARM SL-------- ---------- ---------- 351 400 ENSBTAP00000041740/1-1083 --------KD WFAKRKKFKR PPQRLFDAEK IRSLGGDVAS DGDFLIFEGN bmy_16352T0/1-1123 THAPFPTQKD WFAKRKKFKR PPQRLFDAEK I--------- ---------- BACU008309/1-1081 --------KD WFAKRKKFKR PPQRLFDAEK IRSLGGDVAS DGDFLIFEGN ENSTTRP00000003349/1-1087 --------KD WFAKRKKFKR PPQRLFDAEK IRSLGGDVAS DGDFLIFEGN 401 450 ENSBTAP00000041740/1-1083 RYSRKGFLFK SFAMSAVITE GVKPTLSELE KFEDQPEGID LEVVTESTGK bmy_16352T0/1-1123 --SRKGFLFK SFAMSAVITE GVKPTLSELE KFEDQPEGID LEVVTESTGK BACU008309/1-1081 RYSRKGFLFK SFAMSAVITE GVKPTLSELE KFEDQPEGID LEVVTESTGK ENSTTRP00000003349/1-1087 RYSRKGFLFK SFAMSAVITE GVKPTLSELE KFEDQPEGID LEVVTESTGK 451 500 ENSBTAP00000041740/1-1083 EREHNFQPGD NVEVCEGELI NLQGKILSVD GNKITIMPKH EDLKDMLEFP bmy_16352T0/1-1123 EREHNFQPGD NVEVCEGELI NLQGKILSVD GNKITIMPKH EDLKDMLEFP BACU008309/1-1081 EREHNFQPGD NVEVCEGELI NLQGKILSVD GNKITIMPKH EDLKDMLEFP ENSTTRP00000003349/1-1087 EREHNFQPGD NVEVCEGELI NLQGKILSVD GNKITIMPKH EDLKDMLEFP 501 550 ENSBTAP00000041740/1-1083 AQELRKYFKM GDHVKVIAGR FEGDTGLIVR VEENFVILFS DLTMHE---- bmy_16352T0/1-1123 AQELRKYFKM GDHVKVIAGR FEGDTGLIVR VEENFVILFS DLTMHEVASG BACU008309/1-1081 AQELRKYFKM GDHVKVIAGR FEGDTGLIVR VEENFVILFS DLTMHE---- ENSTTRP00000003349/1-1087 AQELRKYFKM GDHVKVIAGR FEGDTGLIVR VEENFVILFS DLTMHE---- 551 600 ENSBTAP00000041740/1-1083 ---------- ---------- ---------L KVLPRDLQLC SETASGVDVG bmy_16352T0/1-1123 RLGAGWMCQE ETKADEPHGP CFTLSHLPQL KVLPRDLQLC SETASGVDVG BACU008309/1-1081 ---------- ---------- ---------L KVLPRDLQLC SETASGVDVG ENSTTRP00000003349/1-1087 ---------- ---------- ---------L KVLPRDLQLC SETASGVDVG 601 650 ENSBTAP00000041740/1-1083 GQHEWGELVQ LDPQTVGVIV RLERETFQVL NMYGKVVTVR HQAVTRKKDN bmy_16352T0/1-1123 GQHEWGELVQ LDPQTVGVIV RLERETFQVL NMYGKVVTVR HQAVTRKKDN BACU008309/1-1081 GQHEWGELVQ LDPQTVGVIV RLERETFQVL NMYGKVVTVR HQAVTRKKDN ENSTTRP00000003349/1-1087 GQHEWGELVQ LDPQTVGVIV RLERETFQVL NMYGKVVTVR HQAVTRKKDN 651 700 ENSBTAP00000041740/1-1083 RFAVALDSEQ NNIHVKDIVK VIDGPHSGRE GEIRHLFRSF AFLHCKKLVE bmy_16352T0/1-1123 RFAVALDSEQ NNIHVKDIVK VIDGPHSGRE GEIRHLFRSF AFLHCKKLVE BACU008309/1-1081 RFAVALDSEQ NNIHVKDIVK VIDGPHSGRE GEIRHLFRSF AFLHCKKLVE ENSTTRP00000003349/1-1087 RFAVALDSEQ NNIHVKDIVK VIDGPHSGRE GEIRHLFRSF AFLHCKKLVE 701 750 ENSBTAP00000041740/1-1083 NGGMFVCKTR HLVLAGGSKP RDVTNFTVGG FAPMSPRISS PMHPSAGGQR bmy_16352T0/1-1123 NGGMFVCKTR HLVLAGGSKP RDVTNFTVGG FAPMSPRISS PMHPSAGGQR BACU008309/1-1081 NGGMFVCKTR HLVLAGGSKP RDVTNFTVGG FAPMSPRISS PMHPSAGGQR ENSTTRP00000003349/1-1087 NGGMFVCKTR HLVLAGGSKP RDVTNFTVGG FAPMSPRISS PMHPSAGGQR 751 800 ENSBTAP00000041740/1-1083 GGFGSPGGGG GGMSRGRGRR DNELIGQTVR ISQGPYKGYI GVVKDATEST bmy_16352T0/1-1123 GGFGSPGGGS GGMSRGRGRR DNELIGQTVR ISQGPYKGYI GVVKDATEST BACU008309/1-1081 GGFGSPGGGS GGMSRGRGRR DNELIGQTVR ISQGPYKGYI GVVKDATEST ENSTTRP00000003349/1-1087 GGFGSPGGGS GGMSRGRGRR DNELIGQTVR ISQGPYKGYI GVVKDATEST 801 850 ENSBTAP00000041740/1-1083 ARVELHSTCQ TISVDRQRLT TVGSRRPGGM ASTYGRTPMY GSQTPMYGSG bmy_16352T0/1-1123 ARVELHSTCQ TISVDRQRLT TVGSRRPGGM TSTYGRTPMY GSQTPMYGSG BACU008309/1-1081 ARVELHSTCQ TISVDRQRLT TVGSRRPGGM TSTYGRTPMY GSQTPMYGSG ENSTTRP00000003349/1-1087 ARVELHSTCQ TISVDRQRLT TVGSRRPGGM TSTYGRTPMY GSQTPMYGSG 851 900 ENSBTAP00000041740/1-1083 SRTPMYGSQT PLQDGSRTPH YGSQTPLHDG SRTPAQSGAW DPNNPNTPSR bmy_16352T0/1-1123 SRTPMYGSQT PLQDGSRTPH YGSQTPLHDG SRTPAQSGAW DPNNPNTPSR BACU008309/1-1081 SRTPMYGSQT PLQDGSRTPH YGSQTPLHDG SRTPAQSGAW DPNNPNTPSR ENSTTRP00000003349/1-1087 SRTPMYGSQT PLQDGDRTPH YGSQTPLHDG SRTPAQSGAW DPNNPNTPSR 901 950 ENSBTAP00000041740/1-1083 AEEEYEYAFD DEPTPSPQAY GGTPNPQTPG YPDPSSPQVN PQYNPQTPGT bmy_16352T0/1-1123 AEEEYEYAFD DEPTPSPQAY GGTPNPQTPG YPDPSSPQVN PQYNPQTPGT BACU008309/1-1081 AEEEYEYAFD DEPTPSPQAY GGTPNPQTPG YPDPSSPQVN PQYNPQTPGT ENSTTRP00000003349/1-1087 AEEEYEYAFD DEPTPSPQAY GGTPNPQTPG YPDPSSPQVN PQYNPQTPGT 951 1000 ENSBTAP00000041740/1-1083 PAMYNTDQFS PYAAPSPQGS YQPSPSPQSY HQVAPSPAGY QNTHSPASYH bmy_16352T0/1-1123 PAMYNTDQFS PYAAPSPQGS YQPSPSPQSY HQVAPSPAGY QNTHSPASYH BACU008309/1-1081 PAMYNTDQFS PYAAPSPQGS YQPSPSPQSY HQVAPSPAGY QNTHSPASYH ENSTTRP00000003349/1-1087 PAMYNTDQFS PYAAPSPQGS YQPSPSPQSY HQVAPSPAGY QNTHSPASYH 1001 1050 ENSBTAP00000041740/1-1083 PTPSPMAYQA SPSPSPVGYS PMTPGAPSPG GYNPHTPGSG IEQNSSDWVT bmy_16352T0/1-1123 PTPSPMAYQA SPSPSPVGYS PMTPGAPSPG GYNPHTPGSG IEQNSSDWVT BACU008309/1-1081 PTPSPMAYQA SPSPSPVGYS PMTPGAPSPG GYNPHTPGSG IEQNSSDWVT ENSTTRP00000003349/1-1087 PTPSPMAYQA SPSPSPVGYS PMTPGAPSPG GYNPHTPGSG IEQNSSDWVT 1051 1100 ENSBTAP00000041740/1-1083 TDIQVKVRDT YLDTQVVGQT GVIRSVTGGM CSVYLKDSEK VVSISSEHLE bmy_16352T0/1-1123 TDIQVKVRDT YLDTQVVGQT GVIRSVTGGM CSVYLKDSEK VVSISSEHLE BACU008309/1-1081 TDIQVKVRDT YLDTQVVGQT GVIRSVTGGM CSVYLKDSEK VVSISSEHLE ENSTTRP00000003349/1-1087 TDIQVKVRDT YLDTQVVGQT GVIRSVTGGM CSVYLKDSEK VVSISSEHLE 1101 1150 ENSBTAP00000041740/1-1083 PITPTKNNKV KVILGEDREA TGVLLSIDGE DGIVRMDLDE QLKILNLRFL bmy_16352T0/1-1123 PITPTKNNKV KVILGEDREA TGVLLSIDGE DGIVRMDLDE QLKILNLRFL BACU008309/1-1081 PITPTKNN-- KVILGEDREA TGVLLSIDGE DGIVRMDLDE QLKILNLRFL ENSTTRP00000003349/1-1087 PITPTKNNKV KVILGEDREA TGVLLSIDGE DGIVRMDLDE QLKILNLRFL 1151 1200 ENSBTAP00000041740/1-1083 GKLLEA bmy_16352T0/1-1123 GKLLEA BACU008309/1-1081 GKLLEA ENSTTRP00000003349/1-1087 GKLLEA