KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:52:24 2014  Check: 00 ..

 Name: ENSP00000337226/1-241     Len:    255  Check:  9861  Weight:  1.00
 Name: ENSBTAP00000041747/1-222  Len:    255  Check:  565  Weight:  1.00
 Name: bmy_17368T0/1-237         Len:    255  Check:  4061  Weight:  1.00
 Name: BACU006331/1-224          Len:    255  Check:  7525  Weight:  1.00

//


                          1                                                   50
ENSP00000337226/1-241     ---------- ---MFARGLK RKCVGHEEDV EGALAGLKTV SSYSLQRQSL 
ENSBTAP00000041747/1-222  ---------- ---MFARGLK RKCSEEE--- ---------A PADPLQRQSL 
bmy_17368T0/1-237         MLEGFVWHML TGTMFARGLK RKCVEDEE-- --------AA PAYSLQRQSL 
BACU006331/1-224          ---------- ---MFARGLK RKCAEDEE-- --------AA PAYSLQRQSL 


                          51                                                 100
ENSP00000337226/1-241     LDMSLVKLQL CHMLVEPNLC RSVLIANTVR QIQEEMTQDG TWRTVAPQAA 
ENSBTAP00000041747/1-222  LDMSLVKLQL CHMLAEPNLC RSVLIANTVR QIQEEMTQDG SWCLPGPQTA 
bmy_17368T0/1-237         LDMSLVKLQL CHMLVEPNLC RSVLIANTVR QIQEEMTQDG SWCVPVPQTA 
BACU006331/1-224          LDMSLVKLQL CHMLVEPNLC RSVLIANTVR QIQEEMTQDG SWCVPVPQTA 


                          101                                                150
ENSP00000337226/1-241     ERAPLDRLVS TEILCRAAWG QEGAHPAPGL GDGHTQGPVS DLCPVTSAQA 
ENSBTAP00000041747/1-222  GRLPRDRLVS TEILCRSA-- RAGPPQAPDP AD-----LAS ALQAVPAIQV 
bmy_17368T0/1-237         GRASRDRLVS TEILCRSA-- REGVRPAPDP GD-----PAS ELQVVPAAQA 
BACU006331/1-224          GRASRDRLVS TEILCRSA-- REGARPAPDP GD-----PAS ELQVVPAAQA 


                          151                                                200
ENSP00000337226/1-241     PRHLQSSAWE MDGPRENRGS FHKSLDQIFE TLETKNPSCM EELFSDVDSP 
ENSBTAP00000041747/1-222  PGAVPAGPWG RAGPGESRGG FPRSLDQVFD TLESHSPGTV EELFSDVDGP 
bmy_17368T0/1-237         PGAPPGGVWD GDGPRENRGS FHKSLDQIFE TLESQSPGAV QELFSDVDGS 
BACU006331/1-224          PGAPPGAVWD GDGPRENRGS FHKSLDQIFE TLESQSPGAV QELFSDVDGS 


                          201                                                250
ENSP00000337226/1-241     YYDLDTVLTG MMGGARPGPC EGLEGLAP-A TPGPSSSCKS DLGELDHVVE 
ENSBTAP00000041747/1-222  YYDLDAVLTG MVGGAKSGP- EGLETFASAA APPPGTGCKA DLGELDHVVE 
bmy_17368T0/1-237         YYDLDAVLTG MVGGAKSGQ- DGLEAFAATA APPPSAGCKS DLGELDHVVE 
BACU006331/1-224          YYDLDAVLTG MVGGAKSGQ- DGLEAFAATA APSPSAGCKS DLGELDHVVE 


                          251                                                300
ENSP00000337226/1-241     ILVET 
ENSBTAP00000041747/1-222  ILVET 
bmy_17368T0/1-237         ILVET 
BACU006331/1-224          ILVET