KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:25 2014 Check: 00 .. Name: ENSTTRP00000006889/1-832 Len: 1017 Check: 7 Weight: 1.00 Name: bmy_20597T0/1-898 Len: 1017 Check: 6672 Weight: 1.00 Name: BACU003584/1-871 Len: 1017 Check: 5136 Weight: 1.00 Name: ENSP00000263650/1-879 Len: 1017 Check: 118 Weight: 1.00 Name: ENSBTAP00000041753/1-873 Len: 1017 Check: 6015 Weight: 1.00 // 1 50 ENSTTRP00000006889/1-832 ---------- ---------- ---------- ---------- ---------- bmy_20597T0/1-898 -MDASWAPRG GSLPCAQCRP PGKGSAADTP PVTHPSSCSR AHLMRPVHPP BACU003584/1-871 MSSTLWVQGR TWSPTAHRRP GTKG------ ---------- ---------- ENSP00000263650/1-879 MKEEAFLR-R RFSLC----P PSST------ ---------- ---------- ENSBTAP00000041753/1-873 MKEEAFLR-R RFSLC----P PSST------ ---------- ---------- 51 100 ENSTTRP00000006889/1-832 ---------- ---------- ---------- ---------- ---------- bmy_20597T0/1-898 GAGRGRDAFL PPPASCAPAP PPHPLTPAHL SSSPLLQQLE SLLQAEYRLC BACU003584/1-871 ---------- ---------- -PR---PQAL PRR------- -C----HRRN ENSP00000263650/1-879 ---------- ---------- -PQKVDPRKL TRNLLLSGDN EL----YPLS ENSBTAP00000041753/1-873 ---------- ---------- -PQ-----KL SRNLLVGGEH EV-----DVG 101 150 ENSTTRP00000006889/1-832 --KDME---- ---------- ----PN-SPS PPRDEG---- ---------- bmy_20597T0/1-898 NGSDRECVSP TAKVTKKEAL KPVRPHLHPS LPKGGGQTAP WPPPHPLYLS BACU003584/1-871 TGCAMG---- ---------- ----PT-GNV CPRQPR---- ---------- ENSP00000263650/1-879 PGKDME---- ---------- ----PN-GPS LPRDEG---- ---------- ENSBTAP00000041753/1-873 PGKDME---- ---------- ----PH-GPS PTRDEG---- ---------- 151 200 ENSTTRP00000006889/1-832 ---PPTPGSA TKVPPAEYRL CNGSDRECVS PTAKVTKKEA L-KAQKESYR bmy_20597T0/1-898 SPCPPLRPLA RRWRPS--RV EGPPGRASPG PSPLTYLRVP WAQAQKESYR BACU003584/1-871 ---SPRRKLS RRWRPS--RV EGPPGRASPG PSPLTHPRVP WAQAQKESYR ENSP00000263650/1-879 ---PPTPSSA TKVPPAEYRL CNGSDKECVS PTARVTKKET L-KAQKENYR ENSBTAP00000041753/1-873 ---PPTPGSA TKVPPAEYRL CNGSDRECVS PTAKVSKKEA L-KAQKESYR 201 250 ENSTTRP00000006889/1-832 QEKKRATKQL LSALTDPSVV IMADSLK--- ---------- ------XXXX bmy_20597T0/1-898 QEKKRATKQL LSALTDPSVV IMADSLKPSR CPWVPGRHGR QRPSPQIRGT BACU003584/1-871 QEKKRATKQL LSALTDPSVV IMADSLK--- ---------- ------IRGT ENSP00000263650/1-879 QEKKRATRQL LSALTDPSVV IMADSLK--- ---------- ------IRGT ENSBTAP00000041753/1-873 QEKKRATRQL LSALTDPSVV IMADSLK--- ---------- ------IRGT 251 300 ENSTTRP00000006889/1-832 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20597T0/1-898 LKSWTKLWCV LKPGVLLIYK TPKVGQWVGT VLLHCCELIE RPSKKDGFCF BACU003584/1-871 LKSWTKLWCV LKPGVLLIYK TPKVGQWVGT VLLHCCELIE RPSKKDGFCF ENSP00000263650/1-879 LKSWTKLWCV LKPGVLLIYK TPKVGQWVGT VLLHCCELIE RPSKKDGFCF ENSBTAP00000041753/1-873 LKSWTKLWCV LKPGVLLIYK TPKVGQWVGT VLLHCCELIE RPSKKDGFCF 301 350 ENSTTRP00000006889/1-832 XXXXXXXXXX XXXXGPKGES VGSITQPLPS SYLIFRAASE SDGRCWLDAL bmy_20597T0/1-898 KLFHPLDQSV WAVKVPQCEP WGS-GGP--- ------GKER APGGXWL--- BACU003584/1-871 KLFHPLDQSV WAVKGPKGES VGSITQPLPS SYLIFRAASE SDGRCWLDAL ENSP00000263650/1-879 KLFHPLDQSV WAVKGPKGES VGSITQPLPS SYLIFRAASE SDGRCWLDAL ENSBTAP00000041753/1-873 KLFHPLDQSV WAVKGPKGES VGSITQPLPS SYLIFRAASE SDGRCWLDAL 351 400 ENSTTRP00000006889/1-832 ELALRCSSLL RLSTCRQGRD GEPGSSPDAS PSSLCGLPAS AAVH-DQDLF bmy_20597T0/1-898 -----CGRRA QMGILWKTR- ---------- --------FS GVVEEGGKLL BACU003584/1-871 ELALRCSSLL RLSACKQGRD GEPGSSPDAS PSSLCGLPPS AAIH-DQDLF ENSP00000263650/1-879 ELALRCSSLL RLGTCKPGRD GEPGTSPDAS PSSLCGLPAS ATVHPDQDLF ENSBTAP00000041753/1-873 ELALRCSSLL RLSTCKQGRD GEPGSSPDGS PSSLCGLPAS GAIH-DQDLF 401 450 ENSTTRP00000006889/1-832 PLNG-SSLEN DAFSDKSERE NAEDSDKETQ DRRRKAESGG EPSEAPGRPA bmy_20597T0/1-898 LFGGWAAGEG PGFSASGWR- ---------- -LKRKERGGW ERAE--GGP- BACU003584/1-871 PLNG-SSLEN DAFSDKSERE NAEDSDKETQ DHRRKAESGS DQSEAPGRPV ENSP00000263650/1-879 PLNG-SSLEN DAFSDKSERE NPEESDTETQ DHSRKTESGS DQSETPGAPV ENSBTAP00000041753/1-873 PLNG-SSLEN DAFSDKSERE NAEESDNETH DHSRKTESGS DQSEAPVGPG 451 500 ENSTTRP00000006889/1-832 RRGTTYVVQE HEDLGEXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20597T0/1-898 ---------- -------GPP TWNEGIPPPH R--------- ---------- BACU003584/1-871 RRGTTYVVQD HEELGELGEA SQVETVSDEH KSLMWVLLKQ LRPGMDLSRV ENSP00000263650/1-879 RRGTTYVEQV QEELGELGEA SQVETVSEEN KSLMWTLLKQ LRPGMDLSRV ENSBTAP00000041753/1-873 HRGTTYVVQD HEELGERGEA SQVETVSEEN KSLVWVLLKQ LRPGMDLSRV 501 550 ENSTTRP00000006889/1-832 XXXXXXXXXX XXXXXXXXXX XXXXXXXXAA SEEDAYSRIK LVLQWYLSGF bmy_20597T0/1-898 ---------- ---------- -------RAA LEEDAYSRIK LVLQWYLSGF BACU003584/1-871 VLPTFVLEPR SFLNKLSDYY YHADLLSRAA LEEDAYSRIK LVLQWYLSGF ENSP00000263650/1-879 VLPTFVLEPR SFLNKLSDYY YHADLLSRAA VEEDAYSRMK LVLRWYLSGF ENSBTAP00000041753/1-873 ALPTFVLEPR SFLNKLSDYY CHADLLSRAA LEEDAYSRIK LVLRWYLSGF 551 600 ENSTTRP00000006889/1-832 YKKPKGIKKP YNPILGETFR CCWFHPQNHS HTFYIAEQ-- ---------- bmy_20597T0/1-898 YKKPKGIKKP YNPILGETFR CCWFHPENHS HTFYIAEQAR ARPPWAGRWA BACU003584/1-871 YKKPKGIKKP YNPILGETFR CCWFHPQSHS HTFYIAEQ-- ---------- ENSP00000263650/1-879 YKKPKGIKKP YNPILGETFR CCWFHPQTDS RTFYIAEQ-- ---------- ENSBTAP00000041753/1-873 YKKPKGIKKP YNPILGETFR CCWFHPQTNS HTFYIAEQ-- ---------- 601 650 ENSTTRP00000006889/1-832 ---------- --VSHHPPVS AFHVSNRKDG FCISGSITAK SRFYXXXXXX bmy_20597T0/1-898 LQRTGPWQWA GGVSHHPPVS AFHVSNRKDG FCISGSITAK SRFYGNSLSA BACU003584/1-871 ---------- --VSHHPPVS AFHVSNRKDG FCISGSITAK SRFYGNSLSA ENSP00000263650/1-879 ---------- --VSHHPPVS AFHVSNRKDG FCISGSITAK SRFYGNSLSA ENSBTAP00000041753/1-873 ---------- --VSHHPPVS AFHVSNRKDG FCISGSITAK SRFYGNSLSA 651 700 ENSTTRP00000006889/1-832 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20597T0/1-898 LLDGKATLTF LNRVEDYTLT MPYAHCKGIL YGTMTMELGG RVTVECEKNN BACU003584/1-871 LLDGKATLTF LNRVEDYTLT MPYAHCKGIL YGTMTMELGG RVTVECEKNN ENSP00000263650/1-879 LLDGKATLTF LNRAEDYTLT MPYAHCKGIL YGTMTLELGG KVTIECAKNN ENSBTAP00000041753/1-873 LLDGKATLTF LNRAEDYSLT MPYAHCKGIL YGTMTMELGG RVTIECEKNS 701 750 ENSTTRP00000006889/1-832 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20597T0/1-898 FQAELEFKLK PFFGGSTSIN QVSGKITSGE EVLARLTGHW DREVFIKEEG BACU003584/1-871 FQAELEFKLK PFFGGSTSLN QVSGKITSGE EVLARLTGHW DRGGFIKEEG ENSP00000263650/1-879 FQAQLEFKLK PFFGGSTSIN QISGKITSGE EVLASLSGHW DRDVFIKEEG ENSBTAP00000041753/1-873 LQAELEFKLK PFFGGSTSIN QISGKITSGE EVLARLTGHW DREVFIKEEG 751 800 ENSTTRP00000006889/1-832 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLWQH VTRAISEGDQ bmy_20597T0/1-898 RGGAELFWNP SEEVRGQRLK RHTVPLEEQT ELESERLWQH VTRAISEGDQ BACU003584/1-871 RGGAELFWNP SEEIRGRRLK RHTVPLEEQT ELESERLWQH VTRAISEGDQ ENSP00000263650/1-879 SGSSALFWTP SGEVRRQRLR QHTVPLEEQT ELESERLWQH VTRAISKGDQ ENSBTAP00000041753/1-873 RGGPELFWNP SEEVRRQRLK RYTVLLEEQT ELESERLWQH VTRAISEGDQ 801 850 ENSTTRP00000006889/1-832 HKATQEKFAL EEAQRHQARE RQQNLVPWTP QLFHLDPTTQ EWRYRYEDHS bmy_20597T0/1-898 HKATQEKFAL EEAQRQRARE RQQNLVPWTP QLFHLDPATR EWRYRYEDHS BACU003584/1-871 HKATREKFAL EEAQRQRARE RQQNLVPWSP QLFQLDPASR EWRYRYEDHS ENSP00000263650/1-879 HRATQEKFAL EEAQRQRARE RQESLMPWKP QLFHLDPITQ EWHYRYEDHS ENSBTAP00000041753/1-873 HKATQEKFSL EEAQRQRARE RQQNLVPWTP QLFHLDPATQ EWRYRYENHS 851 900 ENSTTRP00000006889/1-832 PWDPLKDIAQ FEQDGVLHTL QRETMAGQTT FLGSPGPRHQ GSGPDRRLRK bmy_20597T0/1-898 PWDPLKDIAQ FEQDGVLHTL QRETMARQTT FLGSPGPRHQ GSGPDRRLRK BACU003584/1-871 PWDPLKDIAQ FEQDGVLHTL RRETMARQTT FLGSPGPRRQ GSGPDRRLRK ENSP00000263650/1-879 PWDPLKDIAQ FEQDGILRTL QQEAVARQTT FLGSPGPRHE RSGPDQRLRK ENSBTAP00000041753/1-873 PWDPLKDIAQ FEQDGVLHTL QRETMAGQTA FLGSPGPRHQ GSTPNPRLRK 901 950 ENSTTRP00000006889/1-832 ASDQPSGHSQ ATESSGSTPE SCPELSD-EE EDRDFAPGCK SPCPRCGKEA bmy_20597T0/1-898 ASDQPSGHSQ ATESSGSTPE SCPELSE-EE EDRDFAPGCE SPCPRCGKEA BACU003584/1-871 ASDQPSGHSQ ATESSGSTPE SCPELSD-EE DDRDFAPGCE SPCPRCGKEA ENSP00000263650/1-879 ASDQPSGHSQ ATESSGSTPE SCPELSD-EE QDGDFVPGGE SPCPRCRKEA ENSBTAP00000041753/1-873 PSDQPSGHSQ VTESSGSTPE SCPELSDEEE EDGDIVPGCE SPCPRCGKEA 951 1000 ENSTTRP00000006889/1-832 WRLQLLHEGI LSIREAQQEL HRHLSAVLSS TAQARQAPAP GLLHSPRSWF bmy_20597T0/1-898 WRLQLLHEGI LSIREAQQEL HRHLSAVLSS TAQARQAPAP GLLHSPRPWF BACU003584/1-871 WRLQLLHEGI LSIREAQQEL HRHLSAVLSS TAQARQAPAP GLLHSPRPWF ENSP00000263650/1-879 RRLQALHEAI LSIREAQQEL HRHLSAMLSS TARAAQAPTP GLLQSPRSWF ENSBTAP00000041753/1-873 RRLQVLHEAI LSIREAQQEL HRHLSAMLSS TARARQAPAP GPLHSPRSWF 1001 1050 ENSTTRP00000006889/1-832 LLCMFLACQL LINYILK bmy_20597T0/1-898 LLCVFLACQL LINYILK BACU003584/1-871 LLCVFLACQL LINYILK ENSP00000263650/1-879 LLCVFLACQL FINHILK ENSBTAP00000041753/1-873 LLCVFLACQL LINYILK