KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:25 2014 Check: 00 .. Name: ENSP00000356530/1-741 Len: 741 Check: 7570 Weight: 1.00 Name: ENSBTAP00000041757/1-723 Len: 741 Check: 1508 Weight: 1.00 Name: ENSTTRP00000007218/1-736 Len: 741 Check: 8153 Weight: 1.00 Name: bmy_10497T0/1-460 Len: 741 Check: 3891 Weight: 1.00 Name: BACU005796/1-738 Len: 741 Check: 9715 Weight: 1.00 // 1 50 ENSP00000356530/1-741 MESRDHNNPQ EGPTSSSGRR AAVEDNHLLI KAVQNEDVDL VQQLLEGGAN ENSBTAP00000041757/1-723 METESHNNPQ ERPTPSSNGK ASMGDNHSLI KAVRDEDIES VQQLLERGAD ENSTTRP00000007218/1-736 METKSPNNPQ ERPTPSTNGR VSEEDNHLLI KATKEDDIEL VQQLLKKGAD bmy_10497T0/1-460 METKNHNNPQ ERPTPSTNGR ASVEDNHLLI KATKTEDIEL VRQLLKKGAD BACU005796/1-738 METKKHKNPQ ERPTPSTNGR ASVEDNHLLL KATKNEDIEL VRQLLNKGAD 51 100 ENSP00000356530/1-741 VNFQEEEGGW TPLHNAVQMS REDIVELLLR HGADPVLRKK NGATPFILAA ENSBTAP00000041757/1-723 VNFQ-EEWGW SPLHNAVQVD REDIVELLLS HGAEPCLRKK NGATPFIIAG ENSTTRP00000007218/1-736 VNFQDEEWGW SPLHNAVQSG NEDIVDLLLN YGAEPCLRKR NGATPFIVAG bmy_10497T0/1-460 VNFQDEEXGW SPLHNAVQSG NEDIVALLLN HGAEPCLRKR NGATPFIVAG BACU005796/1-738 VNFQDEEFGW SPLHNAVQSD NEDMVDLLLN HGAEPCLRKR NGATPFIVAG 101 150 ENSP00000356530/1-741 IAGSVKLLKL FLSKGADVNE CDFYGFTAFM EAAVYGKVKA LKFLYKRGAN ENSBTAP00000041757/1-723 IVGNVKLLKL LLPKVTDVNE CDVNGFTAFM EAAVYGKVEA LRFLYNNGAE ENSTTRP00000007218/1-736 ITGNVKVLKL LLPKVADVNE CDVHGFTAFM EASAYGRVEA LRFLYNNGAK bmy_10497T0/1-460 IAGNVKVLKL LLPKVADVNE CDVHGFTAFM EASVYGRVKA LRFLYKNGAK BACU005796/1-738 IAGNVKVLKL LLPKVADVNE CDVHGFTAFV EASVYGRVEA LRFLYKNGAK 151 200 ENSP00000356530/1-741 VNLRRKTKED QERLRKGGAT ALMDAAEKGH VEVLKILLDE MGADVNACDN ENSBTAP00000041757/1-723 VNLHRKTIED QERVKKGGAT ALMDAARRGH VDVVEILLHE MGADVNARDN ENSTTRP00000007218/1-736 VNLHRKTKQD QEKIRKGGAT ALMDAAEEGH VDVVRILLHE MGADVNARDN bmy_10497T0/1-460 VNLHRKTKQD KEKIRKGGAT ALMDAAENGH VDVVRILLHE MGADVNARDN BACU005796/1-738 VNLRRKAKQD QEKIRKGGAT ALMHAAEEGH VDVVRILLHE MGADVNARDN 201 250 ENSP00000356530/1-741 MGRNALIHAL LSSDDSDVEA ITHLLLDHGA DVNVRGERGK TPLILAVEKK ENSBTAP00000041757/1-723 RGRNALIYAL LNSDDEKVKA ITRLLLDYKV DVNVRGEGRK TPLILAVEKK ENSTTRP00000007218/1-736 MGRNALTYAL LHSDNEKVKA ITRLLLDCKV DVSVRGEGKK TPLILAVEKK bmy_10497T0/1-460 MGRNALTFAL LNSDGEKVKA ITRLLLDCKV DVSVRGEGRK TPLILAVEKK BACU005796/1-738 MGRNALTYAL LNSDGEKVKA ITRLLLDCKV DVSVRGEGRK TPLILAVEKK 251 300 ENSP00000356530/1-741 HLGLVQRLLE QEHIEINDTD SDGKTALLLA VELKLKKIAE LLCKRGASTD ENSBTAP00000041757/1-723 NLDLVQMLLE QTAIEINDTD SEGKTALLLA VELKLKEIAQ LLCRKGASTK ENSTTRP00000007218/1-736 NLGLLQMLLE QKHIEINDTD NEGKTALHLA VELKLKEIAQ LLCRKGARTD bmy_10497T0/1-460 NLGLVQMLLE QKHIEMNETD --------IS VSL------- ---------- BACU005796/1-738 NLGLVQMLLE QKHIEMNDTD IEGKTALHLA VELKLGEIAK LLCHKGARTD 301 350 ENSP00000356530/1-741 CGDLVMTARR NYDHSLVKVL LSHGAKEDFH PPAEDWKPQS SHWGAALKDL ENSBTAP00000041757/1-723 CGDLVAIAKR NYDSDLAKFL RQHGAVEDVC PPAKAWKPQS SRWGEALKHL ENSTTRP00000007218/1-736 CGDLLAIARR NYDHDLAKFL RQHGAVEDFH APAQDWKPQS SRWGEALKHL bmy_10497T0/1-460 ---------- ---------- ---------- -------PRD SKL------- BACU005796/1-738 CGDLLAIARR NYDRDLAKFL WQHGAVEDFH PPAQDWKPQS SRWGEALKHL 351 400 ENSP00000356530/1-741 HRIYRPMIGK LKFFIDEKYK IADTSEGGIY LGFYEKQEVA VKTFCEGSPR ENSBTAP00000041757/1-723 HRIYRPMIGK LKIFIDEEYK IADTSQGGIY LGLYEEQEVA VKRFPKGSTR ENSTTRP00000007218/1-736 HGIYRPMIGK LKIFIDEEYK IADTSEGGIY LGFYEDQEVA VKLFYEGSTH bmy_10497T0/1-460 ---------- ---------- ---------- ---------- ---------- BACU005796/1-738 HRIYRPMIGK LKIFIEEEYK IADTSEGGIY LGFYEDQEVA VKLFYEGSTH 401 450 ENSP00000356530/1-741 AQREVSCLQS SRENSHLVTF YGSESHRGHL FVCVTLCEQT LEACLDVHRG ENSBTAP00000041757/1-723 GQNEVSCLQS NRANGHVVTF YGSESDRTCL YVCLALCEHT LEKHLDDRKG ENSTTRP00000007218/1-736 GQNEVSSLQS NRINSNVVTF YGSENYKGSL YVCLALCEHT LEEHLANHRG bmy_10497T0/1-460 ---------- ---------- ---------- ------C--- ---------- BACU005796/1-738 GQNEVSLLQS NRTNSNVVTF YGSENYRGSL YVCLGLCEHT LEEHLADHRG 451 500 ENSP00000356530/1-741 EDVENEEDEF ARNVLSSIFK AVQELHLSCG YTHQDLQPQN ILIDSKKAAH ENSBTAP00000041757/1-723 EAVQNKEDEF ARNILSSLFK AVEELHRS-G YTHQDLQPQN ILIDSKNGAC ENSTTRP00000007218/1-736 EAVRNKEDEF ARNVLSSLFK AVEELHLS-G YTHQDLQPQN MLIXXXXXXX bmy_10497T0/1-460 ---------- ---------- ---------- ---------- ---------- BACU005796/1-738 EAVQNKEDEF ARNVLSSLFK AVEELHLS-G YTHQDLQPQN VLIDSKNGAC 501 550 ENSP00000356530/1-741 LADFDKSIKW AGDPQEVKRD LEDLGRLVLY VVKKGSISFE DLKAQSNEEV ENSBTAP00000041757/1-723 LADFDKSVKG TGDPQEIKRD LEALGLLVLY VVKKGNDSFE MLKNLRTEEL ENSTTRP00000007218/1-736 XXXXXXXXXX XXXXXXXXXX XXALGLLVLY VVNQGDISFE RLKDLRHGEL bmy_10497T0/1-460 ---------- --------RA KTALGLLVLY VVNQGDISFE RLKDLRTEEL BACU005796/1-738 LADFDKSIKW TGDPQEIERD LEALGLLVLY VVKQGDISFE RLKDLRREEL 551 600 ENSP00000356530/1-741 VQLSPDEETK DLIHRLFHPG EHVRDCLSDL LGHPFFWTWE SRYRTLRNVG ENSBTAP00000041757/1-723 IERSPDKETR DLIQHLLVPG DNVKGHLSGL LAHPFFWSWE SRYRTLRDVG ENSTTRP00000007218/1-736 IQLSPDKETR DLIRHLFSPG DNVKDHLSGL LGHPFFWSWA SRYRTLRDVG bmy_10497T0/1-460 IQLSPDEETG DLIHHLFFPG DNVKDHLSGL LGHPFFWSWA SRYRTLRDVG BACU005796/1-738 IQLSPDEETR DLIRHLFFPG DNVKDHLSGL LGHPFFWSWA SRYRTLRDVG 601 650 ENSP00000356530/1-741 NESDIKTRKS ESEILRLLQP GPSEHSKSFD KWTTKINECV MKKMNKFYEK ENSBTAP00000041757/1-723 NESDIKTRNT NGKILQLLQP ETSELPS-FA QWTIEVDKSV MKKMNAFYKK ENSTTRP00000007218/1-736 NESDIKTRNA ESKILQLLQP GTSELSTSFA QWTTKIDKFV MEKMNEFYKK bmy_10497T0/1-460 NESDIKKRNA NGRILQLLQP GTSELSTSFA QWTT------ ---------- BACU005796/1-738 NESDIKTRNA DGKVFQLLHP ETSELSTSFA QWTTKIDRFV MKEMNKFYKK 651 700 ENSP00000356530/1-741 RGNFYQNTVG DLLKFIRNLG EHIDEEKHKK MKLKIGDPSL YFQKTFPDLV ENSBTAP00000041757/1-723 G-NTYQNTVG DLLKFIRNVG EHINEQKNIE MKSKIGEPSQ YFQEKFPDLV ENSTTRP00000007218/1-736 G-NVYQDTVG DLLKFIRNLG EHINEKKNRE MKSKIGEPSQ YFQEKFPDLV bmy_10497T0/1-460 ---------- ---KFIRNLG EHINERKNKE MKSKIGEPSQ YFQEKFPDLV BACU005796/1-738 KRNFYQDTVG DLLKFIRNLG AHVDEETNKE MKSKIGEPSQ YFQEKFPDLV 701 750 ENSP00000356530/1-741 IYVYTKLQNT EYRKHFPQTH SPNKPQCDGA GGASGLASPG C ENSBTAP00000041757/1-723 MYVYKRLQNT EYAKHFPKNL NLNKADV--- ---------- - ENSTTRP00000007218/1-736 MYVYRKLQNT EYTKHFPKTH -LNKPRCDGG GGVSRLASP- - bmy_10497T0/1-460 MYVYRKLQNT EYTKHFPKTH NLNKP----- ---------- - BACU005796/1-738 MYVYRKLQNT EYTKHFPKTH NLNKPRCDGG GGGEQAGQP- -