KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:27 2014 Check: 00 .. Name: ENSBTAP00000041784/1-639 Len: 709 Check: 492 Weight: 1.00 Name: ENSP00000448323/1-677 Len: 709 Check: 7208 Weight: 1.00 Name: BACU006336/1-508 Len: 709 Check: 9909 Weight: 1.00 Name: bmy_17373T0/1-490 Len: 709 Check: 5572 Weight: 1.00 Name: ENSTTRP00000006240/1-612 Len: 709 Check: 5488 Weight: 1.00 // 1 50 ENSBTAP00000041784/1-639 ---------- ---------- ---------- ---------- ---------- ENSP00000448323/1-677 MTGRVCRGCG GTDIELDAAR GDAVCTACGS VLEDNIIVSE VQFVESSGGG BACU006336/1-508 ---------- ---------- ---------- ---------- ---------- bmy_17373T0/1-490 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006240/1-612 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000041784/1-639 ---------- -GAGKAPTLG GGFHVSLGKE SRAQTLQNGR RQIHHLGNQL ENSP00000448323/1-677 SSAVGQFVSL DGAGKTPTLG GGFHVNLGKE SRAQTLQNGR RHIHHLGNQL BACU006336/1-508 ---------- --MGEGGPRG GA-------- --------GE HLSHQLG--- bmy_17373T0/1-490 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006240/1-612 ---------- --AGKTPTLG GGFHVNLGKE SRAQTLQNXX XXXXXXXXXX 101 150 ENSBTAP00000041784/1-639 QLNQHCLDTA FNFFKMAVSK HLTRGRRTAH VVAACLYLVC RTEGTPRILR ENSP00000448323/1-677 QLNQHCLDTA FNFFKMAVSR HLTRGRKMAH VIAACLYLVC RTEGTPHMLL BACU006336/1-508 ---------- ---------- ---------- ---------- --------FR bmy_17373T0/1-490 ---------- ---------- ---------- ---------- -------MLL ENSTTRP00000006240/1-612 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXMLL 151 200 ENSBTAP00000041784/1-639 HLAVHGGFSV HVFESNRTFL VISRYL---- CVEAEALRNP CLYIPRFAHL ENSP00000448323/1-677 DLS--DLLQV NVYVLGKTFL LLAREL---- CINAPAI-DP CLYIPRFAHL BACU006336/1-508 VLP--DVERT PHRASWHCTL LFQGAFGWLR CVSSA---DP CLYIPRFAHL bmy_17373T0/1-490 DLS--DLLQV NVYVLGKTFL LLAREL---- CINAPAI-DP CLYIPRFAHL ENSTTRP00000006240/1-612 DLS--DLLQV NVYVLGKTFL LLAREL---- CINAPAI-DP CLYIPRFAHL 201 250 ENSBTAP00000041784/1-639 LEFGEKNHEV SMTALRLLQR MKRDWMHTGR RPSGLCGAAL LVAARMHDFR ENSP00000448323/1-677 LEFGEKNHEV SMTALRLLQR MKRDWMHTGR RPSGLCGAAL LVAARMHDFR BACU006336/1-508 LEFGDKNHEV SMTALRLLQR MKRDWMHTGR RPSGLCGAAL LVAARMHDFR bmy_17373T0/1-490 LEFGDKNHEV SMTALRLLQR MKRDWMHTGR RPSGLCGAAL LVAARMHDFR ENSTTRP00000006240/1-612 LEFG-QNHEV SMTA--LLQR M-RDWMHTGR RPSGXXXXXL LVAARMHDFR 251 300 ENSBTAP00000041784/1-639 RTVKEVISVV KVCESTLRKR LTEFEDTPTS QLTVDEFMKI DLEEECDPPS ENSP00000448323/1-677 RTVKEVISVV KVCESTLRKR LTEFEDTPTS QLTIDEFMKI DLEEECDPPS BACU006336/1-508 RTVKEVISVV KVCESTLRKR LTEFEDTPTS QLTVDEFMKV DLEEECDPPS bmy_17373T0/1-490 RTVKEVISVV KVCESTLRK- ---------S QLTVDEFMKV DLEEECDPPS ENSTTRP00000006240/1-612 RTVKEVISVV KVCESTLRKR LTEFEDTPTS QLTVDEFMKV DLEEECDPPS 301 350 ENSBTAP00000041784/1-639 YTAGQRKLRL KQLEQVLSKQ LEAVEGEITT YQDAIEIELE NSRPKAKGAL ENSP00000448323/1-677 YTAGQRKLRM KQLEQVLSKK LEEVEGEISS YQDAIEIELE NSRPKAKGGL BACU006336/1-508 YTAGQRKLRM KQLEQVLSKQ LEEVEGEISS YQDAIEIELE NSRPKAKGAL bmy_17373T0/1-490 YTAGQRKLRM KQLEQVLSKQ LEEVE----- ---------- ---------- ENSTTRP00000006240/1-612 YTAGQRKLRM KQLEQVLSKQ LEEVEGEISS YQDAIEIELE NSRPKAKGAL 351 400 ENSBTAP00000041784/1-639 ASLTKDGSVE DSTSSLCG-- ---EEDTEDE ELEAAASHLN KDFYQELLGG ENSP00000448323/1-677 ASLAKDGSTE DTASSLCG-- ---EEDTEDE ELEAAASHLN KDLYRELLGG BACU006336/1-508 ASLTKDGSVE DTTSSLFGAP WGRHEDAEDE ELEAAASHLN KDFYQELLGG bmy_17373T0/1-490 ------GSVE DTTSSLFG-- ---EEDAEDE ELEAAASHLN KDFYQELLGG ENSTTRP00000006240/1-612 ASLTKDGSVE DTTSSLFG-- ---EEDAEDE ELEAAASHLN KDFYQELLGG 401 450 ENSBTAP00000041784/1-639 SVPGSSEAAG VPEEGRRPPA LESLLGPLPT AASLGISDSI RECISSPSHE ENSP00000448323/1-677 A-PGSSEAAG SPEWGGRPPA LGSLLDPLPT AASLGISDSI RECISSQSSD BACU006336/1-508 GIPGSSEAAG GPEGGGRPPA LESLLGPLPT AASLGISDSI RECISSQSRD bmy_17373T0/1-490 GIPGSSEAAG GPEGGGRPPA LESLLGPLPT AASLGISDSI RECISSQSRD ENSTTRP00000006240/1-612 GIPGSSEAAG GPEGGGRPPA LESLLGPLPT AASLGISDSI RECISSQSRD 451 500 ENSBTAP00000041784/1-639 PKDACGDGEL DLSGIDDLEI DRYILNEAEA RVKAELWMRE NAEYLREQKE ENSP00000448323/1-677 PKDASGDGEL DLSGIDDLEI DRYILNESEA RVKAELWMRE NAEYLREQRE BACU006336/1-508 PK-------- ---------- ---------- ---------- ---------- bmy_17373T0/1-490 PKDASGDGEL DLSGIDDLEI DRYILNEAEA RVKAELWMRE NAEYLREQRE ENSTTRP00000006240/1-612 PKDASGDGEL DLSGIDDLEI DRYILNEAEA RVKAELWMRE NAEYLREQRE 501 550 ENSBTAP00000041784/1-639 KEARIAKERE LGIYKEHKPK KSCKRREPIQ ASTAGEAIEK MLEQKKISSK ENSP00000448323/1-677 KEARIAKEKE LGIYKEHKPK KSCKRREPIQ ASTAREAIEK MLEQKKISSK BACU006336/1-508 KEARIAKERE LGIYKEHKPK KSCKRREPIQ ASTAGEAIEK MLEQKKISSK bmy_17373T0/1-490 KEARIAKERE LGIYKEHKPK KSCKRREPIQ ASTAGEAIEK MLEQKKISSK ENSTTRP00000006240/1-612 KEARIAKERE LGIYKEHKPK KSCKRREPIQ ASTAGEAIEK MLEQKKISSK 551 600 ENSBTAP00000041784/1-639 INYSVLRGLD AGGGPPGEDG PPPREHGPPP GEDTGPQGEA ARPPEWTSAR ENSP00000448323/1-677 INYSVLRGLS SAGG------ ---------- ---GSPHRED AQPEHSASAR BACU006336/1-508 INYSVLRDLD SKGG------ ---------- ---GGPHKED ARPQERAGSR bmy_17373T0/1-490 INYSVLRDLD SKGG------ ---------- ---GGPHKED ARPQERAGAR ENSTTRP00000006240/1-612 INYSVLRDLD SKGG------ ---------- ---GSPHRED ARPQERAGAR 601 650 ENSBTAP00000041784/1-639 RLSRRKTSSR RSRPDPSTSA GKRLRPLVST QPAKKVALGE ASLPSAHSLE ENSP00000448323/1-677 KLSRRRTPAS RSGADPVTSV GKRLRPLVST QPAKKVATGE ALLPSSPTLG BACU006336/1-508 KLSRRKTPAS RSGADPVASV GKRLRPMVST QPAKKVAVGE ALLPSAPSLG bmy_17373T0/1-490 KLSRRKTPAS RSGADPVASV GKRLRPMVST QPAKKVAVGE ALLPSPPSLG ENSTTRP00000006240/1-612 KLSRRKTPAR RSGADPVASV GKRLRPMVST QPAKKVAVGE ALLPSTPSLE 651 700 ENSBTAP00000041784/1-639 AERVRPTVVV VESGPVSYHA EEDAEEEDAE EEDGEPCVSA LQMMGGNDYG ENSP00000448323/1-677 AEPARPQAVL VESGPVSYHA DEEADEEEPD EEDGEPCVSA LQMMGSNDYG BACU006336/1-508 AEPARPTAVV VESGPVSYHP EEDADEEEPD EEDGEPCVSA LQMMGGDDYG bmy_17373T0/1-490 AEPVRPTAVV VESGPVSYHP EEDVDEEEPD EEDGEPCVSA LQMMGGDDYG ENSTTRP00000006240/1-612 AEPVRPTAVV VESGPVSYHP EEDADEEDPD EEDGEPCVSA LQMVGGDDYG 701 750 ENSBTAP00000041784/1-639 CDGDDDDGY ENSP00000448323/1-677 CDGDEDDGY BACU006336/1-508 CDGDDDDGY bmy_17373T0/1-490 CDGDDDDGY ENSTTRP00000006240/1-612 CDGDDDDGY