KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:33 2014 Check: 00 .. Name: ENSP00000405068/1-857 Len: 877 Check: 4128 Weight: 1.00 Name: ENSTTRP00000008990/1-647 Len: 877 Check: 6757 Weight: 1.00 Name: ENSBTAP00000041827/1-869 Len: 877 Check: 3824 Weight: 1.00 Name: bmy_05452T0/1-775 Len: 877 Check: 7722 Weight: 1.00 Name: BACU004135/1-851 Len: 877 Check: 1752 Weight: 1.00 // 1 50 ENSP00000405068/1-857 MAKAKKVGAR RKASGAPAGA RGGPAKANSN PFEVKVNRQK FQILGRKTRH ENSTTRP00000008990/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041827/1-869 MGKARSA-AR GKASAAPAGA LGGRARPNPN PFEVKVNRQK FQVLGRKTRH bmy_05452T0/1-775 ---------- ---------- ---------- ---------- --VLGRKTRH BACU004135/1-851 MGKARSAGAR GRAPGAPAGG RGGRARPSAN PFEVKVNRQK FQVLGRKTRH 51 100 ENSP00000405068/1-857 DVGLPGVSRA RALRKRTQTL LKEYKERDKS NVFRDKRFGE YNSNMSPEEK ENSTTRP00000008990/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041827/1-869 DVGLPGVSRA RALQKRTQTL LKEYKERDKS NVFRDKRFGE YNSSISPEEK bmy_05452T0/1-775 DVGLPGVSRA RALQKRTQTL LKEYKERDKS NVFRDKRFGE YNSNISPEEK BACU004135/1-851 DVGLPGVSRA RALQKRTQTL LKEYKERDKS NVFRDKRFGE YNSNISPEEK 101 150 ENSP00000405068/1-857 MMKRFALEQQ RHHEKKSIYN LNEDEELTHY GQSLADIEKH NDIVDSDSDA ENSTTRP00000008990/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041827/1-869 MMKRFALEQQ RQHEKKSIYN LNEDEELTHY GQSLADIEKH NDIVDSDSDT bmy_05452T0/1-775 MMKRFALEQQ RQHEKKSIYN LNEDEELTHY GQSLADIEKH NDIVDSDSDA BACU004135/1-851 MMKRFALEQQ RQHEKKSIYN LNEDEELTHY GQSLADIEKH NDIVDSDSDA 151 200 ENSP00000405068/1-857 EDRGTLSAEL TAAHFGGGGG LLHKKT-QQE GEEREKPKSR KELIEELIAK ENSTTRP00000008990/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041827/1-869 EGRGALSAEL TATHFGGGSG PVPGKAAQQP SGGEEPPKSR RELIEELIAR bmy_05452T0/1-775 EDRGVLSAEL TAAHFGGGGG LLHKKTSQQQ GEEGEQPKSR RELIEELIAK BACU004135/1-851 EDRGVLSAEL TAAHFGGGGG LLHKKTSQQQ GEEGEQPKSR RELIEELIAK 201 250 ENSP00000405068/1-857 SKQEKRERQA QREDALELTE KLDQDWKEIQ TLLSHKTPKS ENRDKKEKPK ENSTTRP00000008990/1-647 -----RERQA QREDALELTE KLDQDWKEIQ TLLARKTPTS ESRGGKEKPK ENSBTAP00000041827/1-869 SKQEKRERQA QREDALELTE KLDQDWKEIQ ALLACKTPKS ESGGGKEKPK bmy_05452T0/1-775 SKQEKRERQS QREDALELTE KLDQDWKEIQ TLLARKAPKS ESRGGKEKPK BACU004135/1-851 SKQEKRERQS QREDALELTE KLDQDWKEIQ TLLAHKTPKS ESRGGKEKPK 251 300 ENSP00000405068/1-857 PDAYDMMVRE LGFEMKAQPS NRMKTEAELA KEEQEHLRKL EAERLRRMLG ENSTTRP00000008990/1-647 PDAYDMMVRE LGFE-KAPPS NRMKTEEELA QEERERLKCL EAERLRRMLG ENSBTAP00000041827/1-869 PDAYDMMVRE LGFEMKAQPS NRMKTEEELA REEQERLRRL EAERLRRMLG bmy_05452T0/1-775 PDAYDVMVRE LGFEMKAQPS NRMKTEEELA QEEQERLEGL EAERLRRMLG BACU004135/1-851 PDAYDMMVRE LGFEMKAQPS NRMKTEEELA QEEQERLEGL EAERLRRMLG 301 350 ENSP00000405068/1-857 KDEDENVKKP KHMSADDLND GFVLDKDDRR LLSYKDGKMN VEEDVQEEQS ENSTTRP00000008990/1-647 KEEDERIKRP KHMSADDLSD GFVLDKDDRR LLSYKDGRMN VE----EEPS ENSBTAP00000041827/1-869 RDEDAHSKRP KHLSADDLND GFVLDTDDRR LLSYKDGKMN VE----EEPS bmy_05452T0/1-775 KEEDEHIKRP KHTSADDLSD GFVLDKDDRR LLSYKDGKMN VE----EEPS BACU004135/1-851 KEEDEHIKRP KHTSADDLSD GFVLDKDDRR LLSYKDGKMN VE----EEPS 351 400 ENSP00000405068/1-857 KEASDPES-- -NEEEGDSSG GEDTEESDSP DSHLDLESNV ESEEENE--- ENSTTRP00000008990/1-647 GEASSSES-- -EREEGXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- ENSBTAP00000041827/1-869 GDSSGGDSGE EEEEKGEGWS EGGPEDSDSP DGHSDLESDA DSEDARSADG bmy_05452T0/1-775 GEASSSES-- -EEEEGKGSS AGDPEESDGP DGPSGLESDV ESKDGSL--- BACU004135/1-851 GEASGSES-- -KEEEGKGSS AGDPEESDGP DSPSGLESDV ESKDESE--- 401 450 ENSP00000405068/1-857 ---------- ---KPAKEQR QTPGKGLISG KERAGKATRD ELPYTFAAPE ENSTTRP00000008990/1-647 ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPK ENSBTAP00000041827/1-869 LVGRESDGVE VRAQLQGDQR PSPGERLPRD DR---AAARA QLPYTFAVPE bmy_05452T0/1-775 ---------- ---RTQEERR PNPGERSTAD DR---EAARA ELPYTFAAPE BACU004135/1-851 ---------- ---RTQEERR PNPGERSTAD DR---EAARA ELPYTFAAPE 451 500 ENSP00000405068/1-857 SYEELRSLLL GRSMEEQLLV VERIQKCNHP SLAEGNKAKL EKLFGFLLEY ENSTTRP00000008990/1-647 SYEELKSLLS GRSTEEQLLV VERIQKCNHP SLAVGNKAKL EKLFGFLLEY ENSBTAP00000041827/1-869 SCEELKSLLS GKSMEDQLLV VERIQKCNHP SLAVGNKAKL EKLFGFLLEY bmy_05452T0/1-775 SYEELKSLLS GRSMEEQLLV VERIQKCNHP SLAVGNKAKL EKLFGFLLEY BACU004135/1-851 SYEELKSLLS GRSMEEQLLV VERIQKCNHP SLAVGNKAKL EKLFGFLLEY 501 550 ENSP00000405068/1-857 VGDLATDDPP DLTVIDKLVV HLYHLCQMFP ESASDAIKFV LRDAMHEMEE ENSTTRP00000008990/1-647 VGDLATSDPP DLGGINKLVV QLYNLCQMFP EAASSAVRFV LRDAMHDMEG ENSBTAP00000041827/1-869 IGDLAVSDPP DLGVIDKLVV PLYDLCQMFP ESASDAVKFV LRDAMHEMEG bmy_05452T0/1-775 VGDLATSDPP DLGGIDKLVV QLYNLCQMFP EAASSAVKFV LRDAMHDMEG BACU004135/1-851 VGDLATSDPP DLGGIDKLVV QLYNLCQMFP EAASSAVKFV LRDAMHDMEG 551 600 ENSP00000405068/1-857 MIETKGRAAL PGLDVLIYLK ITGLLFPTSD FWHPVVTPAL VCLSQLLTKC ENSTTRP00000008990/1-647 MVETTGRAAF PGLDVXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000041827/1-869 TVETTGRAAF PGLDVLIYLK IAGMLFPTSD FWHPVITPAL LCLSQLLTKC bmy_05452T0/1-775 MVETTGRAAF PGLDV----- ---------- ---------- ---------C BACU004135/1-851 MVETTGRAAF PGLDVLIYLK IAGILFPTSD FWHPVVTPAL LCLSQLLTKC 601 650 ENSP00000405068/1-857 PILSLQDVVK GLFVCCLFLE YVALSQRFIP ELINFLLGIL YIATPNKASQ ENSTTRP00000008990/1-647 XXXXXXDVVK GLFVCCVFLD YVSLSQRFI- ELINFLVGIL YIATPSKQSQ ENSBTAP00000041827/1-869 PVRSLQDAVK GLFVCCVFLD YVALSQRFIP ELINFLAGIL HMATPNKQSQ bmy_05452T0/1-775 PVQSLQDVVK GLFVCCVFLD YVSLSQRFIP ELINFLVGIL YIATPNKQSQ BACU004135/1-851 PVQSLQDVVK GLFVCCVFLD YVSLSQRFIP ELINFLVGIL YMATPNKQSQ 651 700 ENSP00000405068/1-857 GSTLVHPFRA LGKNSELLVV SAREDVATWQ QSSLSLRWAS RLRAPTSTEA ENSTTRP00000008990/1-647 GYTLVHPFRA LGKNSELLVV SDEEAMTTWH RRSLPLQWAG RLKAQTETEA ENSBTAP00000041827/1-869 GYTLVHPFRA LGKNSELLLV SDEEDMATWQ RRSLPLQWAG GLKAQTETEA bmy_05452T0/1-775 GYTLVHPFRA LGKNSELLLV SDEEATATWH RRSLPLQWAG GLKAQTETEA BACU004135/1-851 GYTLVHPFRA LGKNSELLLV SDEEATATWH RRSLPLQWAG GLKAQTETEA 701 750 ENSP00000405068/1-857 NHIRLSCLAV GLALLKRCVL MYGSLPSFHA IMGPLQALLT DHLADCSHPQ ENSTTRP00000008990/1-647 NHTRLSCLAV CLALVQRCVT VYGTLPSFHD IVQPLRALLM EHLAARSCPP ENSBTAP00000041827/1-869 NHTRLSCLAL CLALVRRCVL AYGTLPSFHD IARPLRALLT EHLATRCCPP bmy_05452T0/1-775 NHTRLSCLAV CLALVRRCVT AYGTLPSFHD IVRPLRALLT QHLAARSCPP BACU004135/1-851 NHTRLSCLAV CLALVRRCVT TCGTLPSFHD IMRPLRALLT EHLAARSCPP 751 800 ENSP00000405068/1-857 ELQELCQSTL TEMESQKQLC RPLTCEKSKP VPLKLFTPRL VKVLEFGRKQ ENSTTRP00000008990/1-647 ELQELSRSIL TEMEKQPKHY RPLVCEKSKP VPLKLFTPRL VKVLEFGKKQ ENSBTAP00000041827/1-869 TLQELSRSVL TEMENQPRHY RPLVCEKSKP VPLKLFTPRL VKVLEFGRKQ bmy_05452T0/1-775 ELQELSRSIL TEMEKQPKYY RPLVCEKSKP VPLKLFTPRL VKVLEFGKKQ BACU004135/1-851 ELQELSRSIL TEMEKQPKYY RPLVCEKSKP VPLKLFTPRL VKVLEFGKKQ 801 850 ENSP00000405068/1-857 GSSKEEQERK RLIHKHKREF KGAVREIRKD NQFLARMQLS EIMERDAERK ENSTTRP00000008990/1-647 GCTKEEQERK RLIHKHRREF KGAVREIRKD NQFLARMQLS EIMERDAERK ENSBTAP00000041827/1-869 GSTREEQERR RLIHKHKREF KGAVREIRKD NQFLARMRLS EIMERDAERK bmy_05452T0/1-775 GCTKEEQERK RLIHKHKREF KGAVREIRKD NQFLARMQLS EIMERDAERK BACU004135/1-851 GCTKEEQERK RLIHKHRREF KGAVREIRKD NQFLARMQLS EIMERDAERK 851 900 ENSP00000405068/1-857 RKVKQLFNSL ATQEGEWKAL KRKKFKK ENSTTRP00000008990/1-647 RKVKQLFNSL ATQEGEWKAL KRKKFKK ENSBTAP00000041827/1-869 RKVKQLFNSL ATQEGEWKAL KRKKFKK bmy_05452T0/1-775 RKVKQLFNSL AAQEGEWKAL KRKKFKK BACU004135/1-851 RKVKQLFNSL ATQEGEWKAL KRKKFKK