KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:52:33 2014 Check: 00 ..
Name: ENSP00000405068/1-857 Len: 877 Check: 4128 Weight: 1.00
Name: ENSTTRP00000008990/1-647 Len: 877 Check: 6757 Weight: 1.00
Name: ENSBTAP00000041827/1-869 Len: 877 Check: 3824 Weight: 1.00
Name: bmy_05452T0/1-775 Len: 877 Check: 7722 Weight: 1.00
Name: BACU004135/1-851 Len: 877 Check: 1752 Weight: 1.00
//
1 50
ENSP00000405068/1-857 MAKAKKVGAR RKASGAPAGA RGGPAKANSN PFEVKVNRQK FQILGRKTRH
ENSTTRP00000008990/1-647 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000041827/1-869 MGKARSA-AR GKASAAPAGA LGGRARPNPN PFEVKVNRQK FQVLGRKTRH
bmy_05452T0/1-775 ---------- ---------- ---------- ---------- --VLGRKTRH
BACU004135/1-851 MGKARSAGAR GRAPGAPAGG RGGRARPSAN PFEVKVNRQK FQVLGRKTRH
51 100
ENSP00000405068/1-857 DVGLPGVSRA RALRKRTQTL LKEYKERDKS NVFRDKRFGE YNSNMSPEEK
ENSTTRP00000008990/1-647 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000041827/1-869 DVGLPGVSRA RALQKRTQTL LKEYKERDKS NVFRDKRFGE YNSSISPEEK
bmy_05452T0/1-775 DVGLPGVSRA RALQKRTQTL LKEYKERDKS NVFRDKRFGE YNSNISPEEK
BACU004135/1-851 DVGLPGVSRA RALQKRTQTL LKEYKERDKS NVFRDKRFGE YNSNISPEEK
101 150
ENSP00000405068/1-857 MMKRFALEQQ RHHEKKSIYN LNEDEELTHY GQSLADIEKH NDIVDSDSDA
ENSTTRP00000008990/1-647 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000041827/1-869 MMKRFALEQQ RQHEKKSIYN LNEDEELTHY GQSLADIEKH NDIVDSDSDT
bmy_05452T0/1-775 MMKRFALEQQ RQHEKKSIYN LNEDEELTHY GQSLADIEKH NDIVDSDSDA
BACU004135/1-851 MMKRFALEQQ RQHEKKSIYN LNEDEELTHY GQSLADIEKH NDIVDSDSDA
151 200
ENSP00000405068/1-857 EDRGTLSAEL TAAHFGGGGG LLHKKT-QQE GEEREKPKSR KELIEELIAK
ENSTTRP00000008990/1-647 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000041827/1-869 EGRGALSAEL TATHFGGGSG PVPGKAAQQP SGGEEPPKSR RELIEELIAR
bmy_05452T0/1-775 EDRGVLSAEL TAAHFGGGGG LLHKKTSQQQ GEEGEQPKSR RELIEELIAK
BACU004135/1-851 EDRGVLSAEL TAAHFGGGGG LLHKKTSQQQ GEEGEQPKSR RELIEELIAK
201 250
ENSP00000405068/1-857 SKQEKRERQA QREDALELTE KLDQDWKEIQ TLLSHKTPKS ENRDKKEKPK
ENSTTRP00000008990/1-647 -----RERQA QREDALELTE KLDQDWKEIQ TLLARKTPTS ESRGGKEKPK
ENSBTAP00000041827/1-869 SKQEKRERQA QREDALELTE KLDQDWKEIQ ALLACKTPKS ESGGGKEKPK
bmy_05452T0/1-775 SKQEKRERQS QREDALELTE KLDQDWKEIQ TLLARKAPKS ESRGGKEKPK
BACU004135/1-851 SKQEKRERQS QREDALELTE KLDQDWKEIQ TLLAHKTPKS ESRGGKEKPK
251 300
ENSP00000405068/1-857 PDAYDMMVRE LGFEMKAQPS NRMKTEAELA KEEQEHLRKL EAERLRRMLG
ENSTTRP00000008990/1-647 PDAYDMMVRE LGFE-KAPPS NRMKTEEELA QEERERLKCL EAERLRRMLG
ENSBTAP00000041827/1-869 PDAYDMMVRE LGFEMKAQPS NRMKTEEELA REEQERLRRL EAERLRRMLG
bmy_05452T0/1-775 PDAYDVMVRE LGFEMKAQPS NRMKTEEELA QEEQERLEGL EAERLRRMLG
BACU004135/1-851 PDAYDMMVRE LGFEMKAQPS NRMKTEEELA QEEQERLEGL EAERLRRMLG
301 350
ENSP00000405068/1-857 KDEDENVKKP KHMSADDLND GFVLDKDDRR LLSYKDGKMN VEEDVQEEQS
ENSTTRP00000008990/1-647 KEEDERIKRP KHMSADDLSD GFVLDKDDRR LLSYKDGRMN VE----EEPS
ENSBTAP00000041827/1-869 RDEDAHSKRP KHLSADDLND GFVLDTDDRR LLSYKDGKMN VE----EEPS
bmy_05452T0/1-775 KEEDEHIKRP KHTSADDLSD GFVLDKDDRR LLSYKDGKMN VE----EEPS
BACU004135/1-851 KEEDEHIKRP KHTSADDLSD GFVLDKDDRR LLSYKDGKMN VE----EEPS
351 400
ENSP00000405068/1-857 KEASDPES-- -NEEEGDSSG GEDTEESDSP DSHLDLESNV ESEEENE---
ENSTTRP00000008990/1-647 GEASSSES-- -EREEGXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX---
ENSBTAP00000041827/1-869 GDSSGGDSGE EEEEKGEGWS EGGPEDSDSP DGHSDLESDA DSEDARSADG
bmy_05452T0/1-775 GEASSSES-- -EEEEGKGSS AGDPEESDGP DGPSGLESDV ESKDGSL---
BACU004135/1-851 GEASGSES-- -KEEEGKGSS AGDPEESDGP DSPSGLESDV ESKDESE---
401 450
ENSP00000405068/1-857 ---------- ---KPAKEQR QTPGKGLISG KERAGKATRD ELPYTFAAPE
ENSTTRP00000008990/1-647 ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPK
ENSBTAP00000041827/1-869 LVGRESDGVE VRAQLQGDQR PSPGERLPRD DR---AAARA QLPYTFAVPE
bmy_05452T0/1-775 ---------- ---RTQEERR PNPGERSTAD DR---EAARA ELPYTFAAPE
BACU004135/1-851 ---------- ---RTQEERR PNPGERSTAD DR---EAARA ELPYTFAAPE
451 500
ENSP00000405068/1-857 SYEELRSLLL GRSMEEQLLV VERIQKCNHP SLAEGNKAKL EKLFGFLLEY
ENSTTRP00000008990/1-647 SYEELKSLLS GRSTEEQLLV VERIQKCNHP SLAVGNKAKL EKLFGFLLEY
ENSBTAP00000041827/1-869 SCEELKSLLS GKSMEDQLLV VERIQKCNHP SLAVGNKAKL EKLFGFLLEY
bmy_05452T0/1-775 SYEELKSLLS GRSMEEQLLV VERIQKCNHP SLAVGNKAKL EKLFGFLLEY
BACU004135/1-851 SYEELKSLLS GRSMEEQLLV VERIQKCNHP SLAVGNKAKL EKLFGFLLEY
501 550
ENSP00000405068/1-857 VGDLATDDPP DLTVIDKLVV HLYHLCQMFP ESASDAIKFV LRDAMHEMEE
ENSTTRP00000008990/1-647 VGDLATSDPP DLGGINKLVV QLYNLCQMFP EAASSAVRFV LRDAMHDMEG
ENSBTAP00000041827/1-869 IGDLAVSDPP DLGVIDKLVV PLYDLCQMFP ESASDAVKFV LRDAMHEMEG
bmy_05452T0/1-775 VGDLATSDPP DLGGIDKLVV QLYNLCQMFP EAASSAVKFV LRDAMHDMEG
BACU004135/1-851 VGDLATSDPP DLGGIDKLVV QLYNLCQMFP EAASSAVKFV LRDAMHDMEG
551 600
ENSP00000405068/1-857 MIETKGRAAL PGLDVLIYLK ITGLLFPTSD FWHPVVTPAL VCLSQLLTKC
ENSTTRP00000008990/1-647 MVETTGRAAF PGLDVXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSBTAP00000041827/1-869 TVETTGRAAF PGLDVLIYLK IAGMLFPTSD FWHPVITPAL LCLSQLLTKC
bmy_05452T0/1-775 MVETTGRAAF PGLDV----- ---------- ---------- ---------C
BACU004135/1-851 MVETTGRAAF PGLDVLIYLK IAGILFPTSD FWHPVVTPAL LCLSQLLTKC
601 650
ENSP00000405068/1-857 PILSLQDVVK GLFVCCLFLE YVALSQRFIP ELINFLLGIL YIATPNKASQ
ENSTTRP00000008990/1-647 XXXXXXDVVK GLFVCCVFLD YVSLSQRFI- ELINFLVGIL YIATPSKQSQ
ENSBTAP00000041827/1-869 PVRSLQDAVK GLFVCCVFLD YVALSQRFIP ELINFLAGIL HMATPNKQSQ
bmy_05452T0/1-775 PVQSLQDVVK GLFVCCVFLD YVSLSQRFIP ELINFLVGIL YIATPNKQSQ
BACU004135/1-851 PVQSLQDVVK GLFVCCVFLD YVSLSQRFIP ELINFLVGIL YMATPNKQSQ
651 700
ENSP00000405068/1-857 GSTLVHPFRA LGKNSELLVV SAREDVATWQ QSSLSLRWAS RLRAPTSTEA
ENSTTRP00000008990/1-647 GYTLVHPFRA LGKNSELLVV SDEEAMTTWH RRSLPLQWAG RLKAQTETEA
ENSBTAP00000041827/1-869 GYTLVHPFRA LGKNSELLLV SDEEDMATWQ RRSLPLQWAG GLKAQTETEA
bmy_05452T0/1-775 GYTLVHPFRA LGKNSELLLV SDEEATATWH RRSLPLQWAG GLKAQTETEA
BACU004135/1-851 GYTLVHPFRA LGKNSELLLV SDEEATATWH RRSLPLQWAG GLKAQTETEA
701 750
ENSP00000405068/1-857 NHIRLSCLAV GLALLKRCVL MYGSLPSFHA IMGPLQALLT DHLADCSHPQ
ENSTTRP00000008990/1-647 NHTRLSCLAV CLALVQRCVT VYGTLPSFHD IVQPLRALLM EHLAARSCPP
ENSBTAP00000041827/1-869 NHTRLSCLAL CLALVRRCVL AYGTLPSFHD IARPLRALLT EHLATRCCPP
bmy_05452T0/1-775 NHTRLSCLAV CLALVRRCVT AYGTLPSFHD IVRPLRALLT QHLAARSCPP
BACU004135/1-851 NHTRLSCLAV CLALVRRCVT TCGTLPSFHD IMRPLRALLT EHLAARSCPP
751 800
ENSP00000405068/1-857 ELQELCQSTL TEMESQKQLC RPLTCEKSKP VPLKLFTPRL VKVLEFGRKQ
ENSTTRP00000008990/1-647 ELQELSRSIL TEMEKQPKHY RPLVCEKSKP VPLKLFTPRL VKVLEFGKKQ
ENSBTAP00000041827/1-869 TLQELSRSVL TEMENQPRHY RPLVCEKSKP VPLKLFTPRL VKVLEFGRKQ
bmy_05452T0/1-775 ELQELSRSIL TEMEKQPKYY RPLVCEKSKP VPLKLFTPRL VKVLEFGKKQ
BACU004135/1-851 ELQELSRSIL TEMEKQPKYY RPLVCEKSKP VPLKLFTPRL VKVLEFGKKQ
801 850
ENSP00000405068/1-857 GSSKEEQERK RLIHKHKREF KGAVREIRKD NQFLARMQLS EIMERDAERK
ENSTTRP00000008990/1-647 GCTKEEQERK RLIHKHRREF KGAVREIRKD NQFLARMQLS EIMERDAERK
ENSBTAP00000041827/1-869 GSTREEQERR RLIHKHKREF KGAVREIRKD NQFLARMRLS EIMERDAERK
bmy_05452T0/1-775 GCTKEEQERK RLIHKHKREF KGAVREIRKD NQFLARMQLS EIMERDAERK
BACU004135/1-851 GCTKEEQERK RLIHKHRREF KGAVREIRKD NQFLARMQLS EIMERDAERK
851 900
ENSP00000405068/1-857 RKVKQLFNSL ATQEGEWKAL KRKKFKK
ENSTTRP00000008990/1-647 RKVKQLFNSL ATQEGEWKAL KRKKFKK
ENSBTAP00000041827/1-869 RKVKQLFNSL ATQEGEWKAL KRKKFKK
bmy_05452T0/1-775 RKVKQLFNSL AAQEGEWKAL KRKKFKK
BACU004135/1-851 RKVKQLFNSL ATQEGEWKAL KRKKFKK