KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:35 2014 Check: 00 .. Name: ENSBTAP00000041859/1-505 Len: 646 Check: 9113 Weight: 1.00 Name: ENSTTRP00000011887/1-610 Len: 646 Check: 7785 Weight: 1.00 Name: ENSP00000264717/1-625 Len: 646 Check: 4581 Weight: 1.00 Name: bmy_01092T0/1-323 Len: 646 Check: 9378 Weight: 1.00 Name: BACU014557/1-435 Len: 646 Check: 1347 Weight: 1.00 // 1 50 ENSBTAP00000041859/1-505 MPGTKWFQLV TETPEPGKWE SSGYEAALPI TAKSN-LTRD LDKADAEQM- ENSTTRP00000011887/1-610 MPGTKQFQLI -ETAEPDKCE LSGYEAALPI TEKSNPLTRD LDKADAEQIV ENSP00000264717/1-625 MPGTKRFQHV IETPEPGKWE LSGYEAAVPI TEKSNPLTQD LDKADAENIV bmy_01092T0/1-323 ---------- ---------- -------MP- ---------- ---------- BACU014557/1-435 ---------- ----MSGEAQ LSGYEAALPI TEKSNPLTRD LYKADAEQIV 51 100 ENSBTAP00000041859/1-505 ----QCDAEL FQEEGQVMPT YQRLYNESTL TTMEQVAEKV QKVLKEPGVG ENSTTRP00000011887/1-610 RLLGKRDAEI FQEEGQIRPT CQ----ESTL TTMV-AAGKV QEVPKEP--E ENSP00000264717/1-625 RLLGQCDAEI FQEEGQALST YQRLYSESIL TTMVQVAGKV QEVLKEP--D bmy_01092T0/1-323 ---------- ---------T CQ-------- ---------- -----EP--E BACU014557/1-435 RLLGQCDPEI FQEEGQVMPT CQ-------- ---------- ---------- 101 150 ENSBTAP00000041859/1-505 GGLVVLSGGG TSGRMAFLMS VSFNQLMKE- ------TYLN AGGDRSVVAS ENSTTRP00000011887/1-610 GGLVGLS-GG TSGRMAFLMS VSFNQLMKGL GQKPLYTYLV AGGDRSVMAS ENSP00000264717/1-625 GGLVVLSGGG TSGRMAFLMS VSFNQLMKGL GQKPLYTYLI AGGDRSVVAS bmy_01092T0/1-323 GGAGGAEWRG TSGRMAFLMS VSFNQLMKGL GQKPLYTYLI AGGDRSVMAS BACU014557/1-435 ---------- ---------- VSFNQLMIGL GQKPLYTYLI AGGDRSVMAS 151 200 ENSBTAP00000041859/1-505 REGTEYSALD RIEELKK--- ---------V AAGKKRVIVT GASVGLLAPF ENSTTRP00000011887/1-610 REGMEDSALD GIEELK---- ---------V AAGKKRVIVI GISAGLSAPS ENSP00000264717/1-625 REGTEDSALH GIEELKK--- ---------V AAGKKRVIVI GISVGLSAPF bmy_01092T0/1-323 REGTEDSALD GIEELKK--- ---------- -----SVFST DTQPETSAPF BACU014557/1-435 REGTEDNALD GIEELKKSVF STDTQPETSV AAGKKRVIVT GISVGLSAPF 201 250 ENSBTAP00000041859/1-505 LAGQMNYCVD NPD-FLPVLV GFNPLSMASS ERTEGSLQRI EEVIAEQMQK ENSTTRP00000011887/1-610 VAAQMDYCMD NPAVFLPVLI DFNPVSMARN DPIEDWSSTF RQ-IAEQMQK ENSP00000264717/1-625 VAGQMDCCMN NTAVFLPVLV GFNPVSMARN DPIEDWSSTF RQ-VAERMQK bmy_01092T0/1-323 VAGQMDYCMD NPDIFLPVLM GFNPVSTARN DPIEDWSSTF RE-IAEQMPK BACU014557/1-435 VAGQMDYCMD NPAVFLPVLM GFNPVSTARN DPIEDWSSTF QE-IAEQMQK 251 300 ENSBTAP00000041859/1-505 LQEKQEAFVL NPATRPEGLS DSFWMKSRST TNILLEALLP AAHKTVDHCR ENSTTRP00000011887/1-610 LPEKRKAFVL NPATGPEGLS GSSQMKGGSA TKILLETLLL AAHKTADR-- ENSP00000264717/1-625 MQEKQKAFVL NPAIGPEGLS GSSRMKGGSA TKILLETLLL AAHKTVDQ-- bmy_01092T0/1-323 LPXKTESFCA QSC------- ---------- ---------- ---------- BACU014557/1-435 LPEKTESFCA QSS------- ---------- ---------- ---------- 301 350 ENSBTAP00000041859/1-505 WGIAASPRCL LEILQTFKWA SQVTYGQSPK ITTLMKQTHT QPGEKGQVYL ENSTTRP00000011887/1-610 -SIAASPRCL LEILRTFEWA HQVT-SQSPK ITTLMKQVST SLEKKG-VYL ENSP00000264717/1-625 -GIAASQRCL LEILRTFERA HQVTYSQSPK IATLMKSVST SLEKKGHVYL bmy_01092T0/1-323 ---------- ---------- ---------- ---------- ---------- BACU014557/1-435 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000041859/1-505 VGWQTLGIIA IMDGVECMHT FGADDFRDVH GSLIADRSGM FNLAAELINQ ENSTTRP00000011887/1-610 VGWQTLGIIA IMDGVECIHT FGAD-FQDVR GFLIGDHSDM FNQKAEL-NQ ENSP00000264717/1-625 VGWQTLGIIA IMDGVECIHT FGAD-FRDVR GFLIGDHSDM FNQKAELTNQ bmy_01092T0/1-323 -NW------- ---------- ---D-FQDVH GFLIGDHSDM FNQKAEL--- BACU014557/1-435 -NW------- ---------- ---D-FQDVH GFLIGDHSDM FNQKAELINQ 401 450 ENSBTAP00000041859/1-505 GPHFSFSQED FLTSILPSLT ETDTVLFIFT LDDSLTEVQT LVEQ----TP ENSTTRP00000011887/1-610 GPHFSSSHED -LTSILPSLA ETDTVVFILT LDDNLKEVQM LVEV-KEKTS ENSP00000264717/1-625 GPQFTFSQED FLTSILPSLT EIDTVVFIFT LDDNLTEVQT IVEQVKEKTN bmy_01092T0/1-323 ------NQED FLTSILPSLA EMDTVVFIFT LDDNLKEVQV LVEQ------ BACU014557/1-435 GPHFSFSQED FLTSILPSLA EIDTVVFIFT LDDNLKEVQM LVEQVKEKTS 451 500 ENSBTAP00000041859/1-505 NIQALAHSTM GQSLP--IPL KKPFPSIISI TWPLLFFKYE GNFIQKFQHE ENSTTRP00000011887/1-610 HIQALAHSTV GQPLPXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264717/1-625 HIQALAHSTV GQTLL--IPL KKLFPSIISI TWPLLFFEYE GNFIQKFQRE bmy_01092T0/1-323 ---------- -------TPL KKLFPSIISI TWPLLFFEYD GDCIQKFQHE BACU014557/1-435 NIQALAHSTV GQSLPERTPL KKLFPSMISI TWPLLFFEYD GDFIQKFQHE 501 550 ENSBTAP00000041859/1-505 LSTKWVLNTM SIGAHVLLG- ---------- ---------- ---------- ENSTTRP00000011887/1-610 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXRF---GQ ENSP00000264717/1-625 LSTKWVLNTV STGAHVLLGK ILQNHMLDLR ISNSKLFWRA LAMLQRFSGQ bmy_01092T0/1-323 LSTKWVLNT- ---------- ---------- ---------- ---------- BACU014557/1-435 LSTKWVLNT- ---------- ---------- ---------- --------GQ 551 600 ENSBTAP00000041859/1-505 ---------- ---------- ---------- ---------Q ILQNHMLDLL ENSTTRP00000011887/1-610 PKSRCIESLL QAIHVPQPLS DDIRAAPISF HVQVAQEKEQ VIPIALLSLL ENSP00000264717/1-625 SKARCIESLL RAIHFPQPLS DDIRAAPISC HVQVAHEKEQ VIPIALLSLL bmy_01092T0/1-323 ---------V SVLAASSP-- ---------- ---------R VIPIALLSLL BACU014557/1-435 PKARCFESLL QAIHFPQPLL DDIRAAPISF HVQVAHEKEQ VIPIALLSLL 601 650 ENSBTAP00000041859/1-505 I--------- ---------- ---------- --HNSKLF-- ------ ENSTTRP00000011887/1-610 FRCSI-EAQA YLAAAPSVRE AVRSALTRPG RKRNADLLET LDPAVP ENSP00000264717/1-625 FRCSITEAQA HLAAAPSVCE AVRSALAGPG QKRTADPLEI LEPDVQ bmy_01092T0/1-323 FRCSIPEAQA YLAAAPSVRE AVRSALTRPG RKRNADLLET LDRAVP BACU014557/1-435 FRCSIPEAQA YLAAAPSVRE AVRSALTRPG RKRNADLLET LDRAVP