KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:52:35 2014  Check: 00 ..

 Name: BACU007345/1-233          Len:    233  Check:  2711  Weight:  1.00
 Name: ENSP00000363641/1-105     Len:    233  Check:  3392  Weight:  1.00
 Name: bmy_04260T0/1-105         Len:    233  Check:  3437  Weight:  1.00
 Name: ENSTTRP00000000111/1-104  Len:    233  Check:  184  Weight:  1.00
 Name: ENSBTAP00000041860/1-97   Len:    233  Check:  8988  Weight:  1.00

//


                          1                                                   50
BACU007345/1-233          MSVQYRNVLF ANVDVDNARE LAQIYHIKAI PTFQMFKQAQ KIFELCGTDA 
ENSP00000363641/1-105     MVKQIESKTA FQEALDAAGD KLVVVDFSAT W--------- -----CG--- 
bmy_04260T0/1-105         MVKQIESKYA FQEALNSAGE KLIVVDFSAT W--------- -----CG--- 
ENSTTRP00000000111/1-104  MVKQIESKYA FQEALNSAGE KLVVVDFSAT W--------- -----CG--- 
ENSBTAP00000041860/1-97   --------YA FQEALNSAGE KLVVVDFSAT W--------- -----CG--- 


                          51                                                 100
BACU007345/1-233          KKLEEKIREL MRRIMREHRP HKHMPSDKDK QKSKVASQTP AAKMVKQIES 
ENSP00000363641/1-105     ---------- ---------- ---------- ---------- PCKMIKPF-F 
bmy_04260T0/1-105         ---------- ---------- ---------- ---------- PCKMIKPF-F 
ENSTTRP00000000111/1-104  ---------- ---------- ---------- ---------- PCKMIKPF-F 
ENSBTAP00000041860/1-97   ---------- ---------- ---------- ---------- PCKMIKPF-F 


                          101                                                150
BACU007345/1-233          KSLSEKYSNV VFLEVDVDDC QDVASECEVK CMPTFQFFKK GQKAHSVVIS 
ENSP00000363641/1-105     HSLSEKYSNV IFLEVDVDDC QDVASECEVK CMPTFQFFKK GQKVGEF--- 
bmy_04260T0/1-105         HSLSEKYSNV VFLEVDVDDC QDVASECEDK CMPTFQFFKK GQKVGEF--- 
ENSTTRP00000000111/1-104  HSLSEKYSNV VFLEVDVDDC QDVASECEVK CMPTFQFFKK GQKVGEF--- 
ENSBTAP00000041860/1-97   HSLSEKYSNV VFLEVDVDDC QDVAAECEVK CMPTFQFFKK GQKVGEF--- 


                          151                                                200
BACU007345/1-233          DIQNRDAMLH LMAIQYSLNR WCPGRMVRSH GTKHAQGGPL KEVMGMRGPV 
ENSP00000363641/1-105     ---------- ---------- ---------- ------SGAN KEKL------ 
bmy_04260T0/1-105         ---------- ---------- ---------- ------SGAN KEKL------ 
ENSTTRP00000000111/1-104  ---------- ---------- ---------- ------SGAH KE-L------ 
ENSBTAP00000041860/1-97   ---------- ---------- ---------- ------SGAN KEKL------ 


                          201                                                250
BACU007345/1-233          ASKRLAWLIE HRAGHPNQQE LIKQLLKHEK HLT 
ENSP00000363641/1-105     ---------- --------EA TINELV---- --- 
bmy_04260T0/1-105         ---------- --------EA TINELI---- --- 
ENSTTRP00000000111/1-104  ---------- --------EA TINELI---- --- 
ENSBTAP00000041860/1-97   ---------- --------EA TINELI---- ---