KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:37 2014 Check: 00 .. Name: ENSP00000387907/1-544 Len: 545 Check: 7209 Weight: 1.00 Name: bmy_16912T0/1-296 Len: 545 Check: 8819 Weight: 1.00 Name: ENSBTAP00000041916/1-502 Len: 545 Check: 3130 Weight: 1.00 Name: BACU012804/1-432 Len: 545 Check: 6502 Weight: 1.00 Name: ENSTTRP00000003236/1-231 Len: 545 Check: 5319 Weight: 1.00 // 1 50 ENSP00000387907/1-544 MRIFIAFEGS FEPFDVSADE TVEVVKLMIK DYFHIPLSED KQGRRYLELM bmy_16912T0/1-296 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041916/1-502 MRIFIAFEGS FEPFDVSTDK TVEAVKLMIK DYFHIPLSED EQGRRYLELT BACU012804/1-432 MRIFIAFEGS FEPFDVSADE TVEAVKLMIK DYFHIPLSED EQGRRYLELM ENSTTRP00000003236/1-231 MRIFIAFEGS FEPFDISADE TVEAVKLMIK DYFHIPLSED EQARRYLELM 51 100 ENSP00000387907/1-544 YAGAALKDSW SLADVGISFC STLKCFVKEE DKPTLYVFNA VTQDTMPVME bmy_16912T0/1-296 -------MGW NHHHLS---- ---------- ---------- ---------- ENSBTAP00000041916/1-502 YAGAALKDSW SLVDVGISFC STLKCFVKEE DKPTLCVFNA VTQETMAIRE BACU012804/1-432 YAGAALKDSW SLTDVGISFC STLKCFVKEE DKPTLCVFNA VTQEIMPIME ENSTTRP00000003236/1-231 YAGAALKDSW SLTDVGISFC STLKCFVKEE EKPTLCLFSA VTQETMPIME 101 150 ENSP00000387907/1-544 SISLLDKTVS DLRTLVTLRC GLPVSVYCLR TPRGLEMYDC NTLKDYQTDI bmy_16912T0/1-296 ---------- ---------- ---------- ---------- -------SST ENSBTAP00000041916/1-502 DISLLGKKVS DLRTLIALRC GFPVSVFCLR TPEGLEMYDC NLLRDYQTEL BACU012804/1-432 TISLLGKKVS DLRTLIALRC GFPVSVFCLR TPEGLEMYDC NTLRDYQTDL ENSTTRP00000003236/1-231 SISLLGKKVS DLRTLIALRC GFPVSVFCLR TPEGLEMYDC NTLRDYQTDL 151 200 ENSP00000387907/1-544 GTTLRLDVWD GWKEFLMGCL LGQKLKVQRY LSKEGPVLKY QKRVALYIAA bmy_16912T0/1-296 GTTLRLDVWD GWKEFLMGCL LGQKLKVQRY LSNEGPVLKY QKRVALYIAA ENSBTAP00000041916/1-502 GTTLRLDVWD GWKEFLMGCL LGQKLQVQRY LSNEGPVLKY QKRVALYIAA BACU012804/1-432 GTTLRLDVWD GWKEFLMGCL LGQKLKVQRY LSNEGPVLKY QKRVALYIAA ENSTTRP00000003236/1-231 GTTLRLDVWD GWKEFLMGCL LGQKLEVQRY LSNEGTVLKY QKRVALYIAA 201 250 ENSP00000387907/1-544 FCGYIELTEW ALKQGARPHE AVGVHPYRAW CHEALHADVS KCPIHAAAEA bmy_16912T0/1-296 FYGHTELTEW ALKQGVRPHE MVGVHPYRAW CHEALHADVS KCPIHAAAEA ENSBTAP00000041916/1-502 FYGYIELTEW ALKQGVRPHE TVGVHPYRAW CQEALHTDVS KCPIHAAAEA BACU012804/1-432 FYGHTELTEW ALKQGVRPHE MVGVHPYRAL CHEALHADVS KCPIHAAAEA ENSTTRP00000003236/1-231 FYRHTELTEW ALKQGVRPHE MVGVHPYRAW C--------- ---------- 251 300 ENSP00000387907/1-544 GQLLILKAFV NYSVLCLECK NAAGQTPLTI VFKHKHKDCV LYLLSKMWST bmy_16912T0/1-296 GQLLTLKAFV NCSVLCLECK NAAGQTPLTI ASKHKHKDCV LYLLSKMWST ENSBTAP00000041916/1-502 GQLLILKAFV NCSVLCLDCK NAAGQTPLTI ACKHKHKDCV LYLLSKMWST BACU012804/1-432 GQLLTLKAFV NCSVLCLECK NAAGQTPLTI ASKHKRKDCV LYLLSKMWST ENSTTRP00000003236/1-231 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000387907/1-544 VSFPKISVPM RIYIKIKQWI LRAQSHSLHK SQFCGARVFG AKVGDTVMVD bmy_16912T0/1-296 VSFLKISVPM RIYIKIKQWV LRAQSHNFNK SQLCGARVFG AKVGDIVMVD ENSBTAP00000041916/1-502 VSFLKISVSM RIYIKIKQWV LRAQSHNLNK GQLCGARVLG AKVGDVVMVD BACU012804/1-432 VSFLKISVPM RIYIKIKQWV LRAQSHNFNK SQLCGARVFG AKVGDVVMVD ENSTTRP00000003236/1-231 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000387907/1-544 GFTKPKMTSK SWHKAGNSDS QSIV-LKLPS LSKQTASSKP VNPLAISQPD bmy_16912T0/1-296 GFTKPKMTSK SWHKAENKDS HGTA-GKLPP LREQTVSRKR VNPFAISQQD ENSBTAP00000041916/1-502 GFTKPKMTSK SWQKAMDKDS QGGIESKLPP LREQTVSRKL ACPLAVAQQD BACU012804/1-432 GFTKPKMTSK SWHKAENKDS QGTV-GKLPP LREQTVSRKR VNPLAISQQD ENSTTRP00000003236/1-231 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000387907/1-544 TRKQALKFHP LVNASSFSEL QKHQQQNQKK ITATARKKEK LIKNTYLPQV bmy_16912T0/1-296 TREQTLKFPP LVDANTSFEL QK--QQNRKK ISLKTQL--- ---------- ENSBTAP00000041916/1-502 TREEIVRFPP LVDANTFSEL QK-RQQSQKK TTATTRKKEK LIKNTYMPQV BACU012804/1-432 TREQTLKFPP LVDANTSFEL QK-TTKSEKS YCHS------ ---------- ENSTTRP00000003236/1-231 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000387907/1-544 PLPPVSRVGY SHPSFFYATP SADFLLKSSF SSFLEHSGKT PWENAIYCLA bmy_16912T0/1-296 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041916/1-502 PLPPISRVGY SHPSFYYATP SADFLLRSSF ASFSEHSGRT PRQNAIYCLA BACU012804/1-432 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003236/1-231 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000387907/1-544 VASAFKEKRW LQQLEIARVL AKKSISNLTT RGGLTACENS LETVL bmy_16912T0/1-296 ---------- ---------- ---------- ---------- ----- ENSBTAP00000041916/1-502 VAR------- ---------- ---------- ---------- ----- BACU012804/1-432 ---------- ---------- ---------- ---------- ----- ENSTTRP00000003236/1-231 ---------- ---------- ---------- ---------- -----