KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:38 2014 Check: 00 .. Name: bmy_21152T0/1-407 Len: 783 Check: 8468 Weight: 1.00 Name: ENSTTRP00000012978/1-588 Len: 783 Check: 6519 Weight: 1.00 Name: ENSP00000356641/1-731 Len: 783 Check: 7599 Weight: 1.00 Name: BACU020115/1-551 Len: 783 Check: 6875 Weight: 1.00 Name: ENSBTAP00000041946/1-735 Len: 783 Check: 6618 Weight: 1.00 // 1 50 bmy_21152T0/1-407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012978/1-588 ---------- ---------- ---------- ---------- ---------- ENSP00000356641/1-731 MSGSRQAGSG SAGTSPGSSA ASSVTSASSS LSSSPSPPSV AVSAAALVSG BACU020115/1-551 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041946/1-735 MSGSRQAGSG SAGTSPGSSA ASSVTSASSS LSSSPSPPSV AASAAALGSG 51 100 bmy_21152T0/1-407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012978/1-588 ---------- ---------- ---------- ---------- ---------- ENSP00000356641/1-731 GVAQAAGSGG LGGPVRPVLV APAVS----G SGGGAVSTGL SRHSCAARPS BACU020115/1-551 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041946/1-735 GEDQDADSGG LGGPARPVLV AAAVSGSGGG SGGGAVSAGL SRLSCAARPS 101 150 bmy_21152T0/1-407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012978/1-588 ---------- ---------- ---------- ---------- PICFDMIEEA ENSP00000356641/1-731 AGVGGSSSSL GSGSRKRPLL APLCNGLINS YEDKSNDFVC PICFDMIEEA BACU020115/1-551 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041946/1-735 AGVGGSSSSL SSGSRKRPPL APLCNGLINS YEDKSNDFVC PICFDMIEEA 151 200 bmy_21152T0/1-407 ----MGQSHT VKTCL----- ----SPSADS VI--IETL-- ----NELILK ENSTTRP00000012978/1-588 YMTKCGHSFC YK-CIHQSLE DNNRCPKCNY VVDNIDHLYP NFLVNELILK ENSP00000356641/1-731 YMTKCGHSFC YK-CIHQSLE DNNRCPKCNY VVDNIDHLYP NFLVNELILK BACU020115/1-551 ---------- YK-CIHQSLE DNNRCPKCNY VVDNIDHLYP NFLVNELILK ENSBTAP00000041946/1-735 YMTKCGHSFC YK-CIHQSLE DNNRCPKCNY VVDNIDHLYP NFLVNELILK 201 250 bmy_21152T0/1-407 QKQRFEEKRF KLDHS----N GHRWQIFQDL LGTDQDNLDL ANVNLMLELL ENSTTRP00000012978/1-588 QKQRFEEKRF KLDHSVSSTN GHRWQIFQDL LGTDQDNLDL ANVNLMLELL ENSP00000356641/1-731 QKQRFEEKRF KLDHSVSSTN GHRWQIFQDW LGTDQDNLDL ANVNLMLELL BACU020115/1-551 QKQRFEEKRF KLDHSVSSTN GHRWQIFQDL LGTDQDNLDL ANVNLMLELL ENSBTAP00000041946/1-735 QKQRFEEKRF KLDHSVSSTN GHRWQIFQDL LGTDQDNLDL ANVNLMLELL 251 300 bmy_21152T0/1-407 VQKKKQLEAK YINSHICESH AAQLQILMEF LKVARRNKRE TLNSSSEIWY ENSTTRP00000012978/1-588 VQKKKQLEA- -------ESH AAQLQILMEF LKVARRNKRE ---------- ENSP00000356641/1-731 VQKKKQLEA- -------ESH AAQLQILMEF LKVARRNKRE ---------- BACU020115/1-551 VQKKKQLEA- -------ESH AAQLQILMEF LKVARRNKRE ---------- ENSBTAP00000041946/1-735 VQKKKQLEA- -------ESH AAQLQILMEF LKVARRNKRE ---------- 301 350 bmy_21152T0/1-407 IGNYLIMNQL SEQSKHTDIW GLNEMADHYQ LEQIQKELSV LEEDIKRVEK ENSTTRP00000012978/1-588 ---------- ---------- ---------Q LEQIQKELSV LEEDIKRVEE ENSP00000356641/1-731 ---------- ---------- ---------Q LEQIQKELSV LEEDIKRVEE BACU020115/1-551 ---------- ---------- ---------Q LEQIQKELSV LEEDIKRVEE ENSBTAP00000041946/1-735 ---------- ---------- ---------Q LEQIQKELSV LEEDIKRVEE 351 400 bmy_21152T0/1-407 FSITF----- --------AF HICQHSIIDS TEYSQPPGFS GSSQTKKQPW ENSTTRP00000012978/1-588 MSGLYSPVSE DSTVPQFEAP SPSHSSIIDS TEYSQPPGFS GSSQTKKQPW ENSP00000356641/1-731 MSGLYSPVSE DSTVPQFEAP SPSHSSIIDS TEYSQPPGFS GSSQTKKQPW BACU020115/1-551 MSGLYSPVSE DSTVPQFEAP SPSHSSIIDS TEYSQPPGFS GSSQTKKQPW ENSBTAP00000041946/1-735 MSGLYSPVSE DSTVPQFEAP SPSHSSIIDS TEYSQPPGFS GSSQTKKQPW 401 450 bmy_21152T0/1-407 YNSTLASRRK RLTAHFEDLE QCYFSTRMSR ISDDSRTASQ LDEFQECLSK ENSTTRP00000012978/1-588 YNSTLASRRK RLTAHFEDLE QCYFSTRMSR ISDDSRTASQ LDEFQECLSK ENSP00000356641/1-731 YNSTLASRRK RLTAHFEDLE QCYFSTRMSR ISDDSRTASQ LDEFQECLSK BACU020115/1-551 YNSTLASRRK RLTAHFEDLE QCYFSTRMSR ISDDSRTASQ LDEFQECLSK ENSBTAP00000041946/1-735 YNSTLASRRK RLTAHFEDLE QCYFSTRMSR ISDDSRTASQ LDEFQECLSK 451 500 bmy_21152T0/1-407 FTRYNSVRPL ATLSYASDLY NGSSIVSSIE FDRDCDYFAI AGVTKKIKVY ENSTTRP00000012978/1-588 FTRYNSVRPL ATLSYASDLY NGSSIVSSIE FDRDCDYFAI AGVTKKIKVY ENSP00000356641/1-731 FTRYNSVRPL ATLSYASDLY NGSSIVSSIE FDRDCDYFAI AGVTKKIKVY BACU020115/1-551 FTRYNSVRPL ATLSYASDLY NGSSIVSSIE FDRDCDYFAI AGVTKKIKVY ENSBTAP00000041946/1-735 FTRYNSVRPL ATLSYASDLY NGSSIVSSIE FDRDCDYFAI AGVTKKIKVY 501 550 bmy_21152T0/1-407 EYGTVIQDAV DIHYPENEMT CNSKISCISW SSYHKNLLAS SDYEGTVILW ENSTTRP00000012978/1-588 EYGTVIQDAV DIHYPENEMT CNSKISCISW SSYHKNLLAS SDYEGTVILW ENSP00000356641/1-731 EYDTVIQDAV DIHYPENEMT CNSKISCISW SSYHKNLLAS SDYEGTVILW BACU020115/1-551 EYGTVIQDAV DIHYPENEMT CNSKISCISW SSYHKNLLAS SDYEGTVILW ENSBTAP00000041946/1-735 EYGTVIQDAV DIHYPENEMT CNSKISCISW SSYHKNLLAS SDYEGTVILW 551 600 bmy_21152T0/1-407 DGFTGQRSKV YQEHEKRCWS VDFNLMDPKL LASGSDDAKV S--------- ENSTTRP00000012978/1-588 DGFTGQRSKV YQEHEKRCWS VDFNLMDPKL LASGSDDAKV KLWSTNLDNS ENSP00000356641/1-731 DGFTGQRSKV YQEHEKRCWS VDFNLMDPKL LASGSDDAKV KLWSTNLDNS BACU020115/1-551 DGFTGQRSKV YQEHEKRCWS VDFNLMDPKL LASGSDDAKV KLWSTNLDNS ENSBTAP00000041946/1-735 DGFTGQRSKV YQEHEKRCWS VDFNLMDPKL LASGSDDAKV KLWSTNLDNS 601 650 bmy_21152T0/1-407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012978/1-588 VASIEAKANV CCVKFSPSSR YHLAFGCADH CVHYYDLRNT KQPIMVFKGH ENSP00000356641/1-731 VASIEAKANV CCVKFSPSSR YHLAFGCADH CVHYYDLRNT KQPIMVFKGH BACU020115/1-551 VASIEAKANV CCVKFSPSSR YHLAFGCADH CVHYYDLRNT KQPIMVFKGH ENSBTAP00000041946/1-735 VASIEAKANV CCVKFSPSSR YHLAFGCADH CVHYYDLRNT KQPIMVFKGH 651 700 bmy_21152T0/1-407 ---------- ---------- ---------- --YILT---- ---------- ENSTTRP00000012978/1-588 RKAVSYAKFV SGEEIVSAST DSQLKLWNVG KPYCLRSF-G HINEKNFV-L ENSP00000356641/1-731 RKAVSYAKFV SGEEIVSAST DSQLKLWNVG KPYCLRSFKG HINEKNFVGL BACU020115/1-551 RKAVSYAKFV SGEEIVSAST DSQLKLWNVG KPYCLRSFKG HINEKNFVGL ENSBTAP00000041946/1-735 RKAVSYAKFV SGEEIVSAST DSQLKLWNVG KPYCLRSFKG HINEKNFVGL 701 750 bmy_21152T0/1-407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012978/1-588 ASNGDYIACG SD-NSLYLYY -GLSKTLLTF KFDTV-SVLD KDR--DDTIE ENSP00000356641/1-731 ASNGDYIACG SENNSLYLYY KGLSKTLLTF KFDTVKSVLD KDRKEDDTNE BACU020115/1-551 ASNGDYIACG SENNSLYLYY KGLSKTLLTF KFDTVKSVLD KDRKEDDTNE ENSBTAP00000041946/1-735 ASNGDYIACG SENNSLYLYY KGLSKTLLTF KFDTVKSVLD KDRKEDDTNE 751 800 bmy_21152T0/1-407 ---------- ---------- ---------- --- ENSTTRP00000012978/1-588 FVSAVCWRXX XXXESNVLIA ANSQGTIKVL ELV ENSP00000356641/1-731 FVSAVCWRAL PDGESNVLIA ANSQGTIKVL ELV BACU020115/1-551 FVSAVCWRA- ---------- ---------- --- ENSBTAP00000041946/1-735 FVSAVCWRAL PDGESNVLIA ANSQGTIKVL ELV