KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:39 2014 Check: 00 .. Name: ENSP00000295055/1-669 Len: 822 Check: 3319 Weight: 1.00 Name: ENSBTAP00000041966/1-669 Len: 822 Check: 2615 Weight: 1.00 Name: ENSTTRP00000000155/1-616 Len: 822 Check: 5564 Weight: 1.00 Name: bmy_19991T0/1-340 Len: 822 Check: 4842 Weight: 1.00 Name: BACU014582/1-709 Len: 822 Check: 327 Weight: 1.00 // 1 50 ENSP00000295055/1-669 MAYYQEPSVE TSIIKFKDQD FTTLRDHCLS MGRTFKDETF PAADSSIGQK ENSBTAP00000041966/1-669 MAHNQQFPAK TPIIKFKEQD FYSLRDHCLN RGLLFEDETF PAETYSIGLQ ENSTTRP00000000155/1-616 MAHNQKLLAK TPIIKFRQQD FYSLRDYCLN RGLLCEDETF PAENYSIGLQ bmy_19991T0/1-340 ---------- ---------- ---------- ---------- ---------- BACU014582/1-709 MEIQEE---- ---------- --------MH RG-------- DAEDNRVGSW 51 100 ENSP00000295055/1-669 LLQEKRLSNV IWKRPQDLPG GP--PHFILD DISRFDIQQG GAADCWFLAA ENSBTAP00000041966/1-669 LLKGKNLSNL SWMRPKDLLK GKSEPLFILE GASRFDIQQG EAGDCWFLAA ENSTTRP00000000155/1-616 LLKGKNLSSL SWMRPKDLLK GKSEPHFILE GVSSFDIQQG EA-------- bmy_19991T0/1-340 ---------- ---------- ---------- ------MNQN GA-------- BACU014582/1-709 RLLVPGSTGL LDTEPTAPAE DPNGPKLFIT ICGDFPFSAP PSC------- 101 150 ENSP00000295055/1-669 LGSLTQNPQY RQKILMVQSF SHQYAGIFRF RFWQCGQWVE VVIDDRLPVQ ENSBTAP00000041966/1-669 LGALTQSPQY LQKILIDQSF SYQYAGIFHF RFWRCGQWVE VVIDDRLPVL ENSTTRP00000000155/1-616 ---------- ---------- ---------- -FWQCGQWVE VVIDDRLPVL bmy_19991T0/1-340 ---------- ---------- ---------- ---------- ---------- BACU014582/1-709 ---------- -------PNS TRAYIPLSLL QFWQCGQWVE VVIDDRLPVL 151 200 ENSP00000295055/1-669 GDKCLFVRPR HQNQEFWPCL LEKAYAKLLG SYSDLHYGFL EDALVDLTGG ENSBTAP00000041966/1-669 NNEYLFVKPR NK-REFWPCL LEKAYAKFHG SYANLHYGYL PDALVDLTGG ENSTTRP00000000155/1-616 NSEH-FVNPR NK-QELWLSL LEKAYAKFHG SYVNLHHGYL PD--VDLTGG bmy_19991T0/1-340 ---------- ---------- ---------- ----LAFG-- ---------- BACU014582/1-709 NNEYFFVNPR NK-QEFWPSL LEKACAKFHA SCVNLHYGYL PDALVDLTGG 201 250 ENSP00000295055/1-669 VITNIHLHSS PVDLVKAVKT ATKAGSLITC ATPSGPTDTA QAMENGLVSL ENSBTAP00000041966/1-669 VVTNISLHSS SSDLMTMVKT AAEAGSLMTC STLAGPTSES VTMANGLVSR ENSTTRP00000000155/1-616 VVTSISLRSS SSDLMTVVKM VAEAGSLMTC STLAGPTTES ARMANRLVSR bmy_19991T0/1-340 ---------- ---------- ---------- ---------- ---------- BACU014582/1-709 VVTNISLHSS SSDLMTMVKM VAEAGSLMTC STLAGPTSES TRMANRLVSR 251 300 ENSP00000295055/1-669 HAYTVTGAEQ IQYRRGWEEI ISLWNPWGWG EAEWRGRWSD GSQEWEETCD ENSBTAP00000041966/1-669 HAYTVTGAEQ IEYRRSWEYL IRLWNP--WG KIEWRGRWSD WSPEWQETHD ENSTTRP00000000155/1-616 HAYTGTGAEQ IQYRSGWEYL IRLWNP--WG ESEWRGRWSD RSLEWQETHD bmy_19991T0/1-340 ---------- ---------- ---------- ---------- ---------- BACU014582/1-709 HAYTVTGAEQ IQYRSGWEYL IRLWNP--WS KSEWRGRRSD RSLEWQETHD 301 350 ENSP00000295055/1-669 PRKSQLHKKR EDGEFWMSCQ DFQQKFIAMF ICSEIPITLD HGNTLHEGWS ENSBTAP00000041966/1-669 QRKSQLYEDK DNGEFWMSCQ DFRDNFFGLF ICNQVPISLD HGSTPHERWS ENSTTRP00000000155/1-616 RRKSQLYENK DDGEFWMSCQ DFRDNF--AF ICKQVPISLD HGNALHERWS bmy_19991T0/1-340 ---------- ------MSCQ DFXDNFFCLF ICNQVPISLD HGNTLLERWS BACU014582/1-709 QRKSQLYENK DDGEFWMSCQ DFRDNF-CLF ICNQVPISLD HGNTLPERWS 351 400 ENSP00000295055/1-669 QIMFRKQVIL GNTAG----G PRNDAQFNFS VQEPMEGTNV VVCVTVAVTP ENSBTAP00000041966/1-669 QMMFKDHLIP GNTEA----G YQRGMQYIFS VPDSMENNNV IMSFN--IGP ENSTTRP00000000155/1-616 QLMFKNHLIP GNVE-----G PQRDMQYIFS VPESMENNNV IVSFNF-VLP bmy_19991T0/1-340 QLMFKNHLIP GNVEGSYDIG PQRDMQYIFS LPESMENNNV IVSFNF-VMP BACU014582/1-709 QLMFKNHLIP GNAE------ ---------- --ESMENNNV IVSFNF-VMP 401 450 ENSP00000295055/1-669 SNLKAEDAKF PLDFQVILAG ------SQRF R--------- -EKFPPVFFS ENSBTAP00000041966/1-669 QNLKAKDRTF PLKYEVFKVD YQ----FQHF Q--------- -DRLPSTFFS ENSTTRP00000000155/1-616 QNLKTTDRTF PLKSEVFKVR ------LQHF R--------- -ERLPSTFFS bmy_19991T0/1-340 QNLKAKDRTF PLKSEVFKFG FLNLPFFSSL RSTISSSISE RERLPPTFFS BACU014582/1-709 QNLKAKDRTF PLKSEVFKID YQ----FQHF R--------E RDCHPPC-FS 451 500 ENSP00000295055/1-669 SFRNTVQSSN NKFRRNFTMT YHLSPGNYVV VAQTRRKSAE FLLRIFLKMP ENSBTAP00000041966/1-669 QFRIAEKGIV SETTCNLTEC FSLSPGTYVV VVSEGREAVE FLLRIFLKMP ENSTTRP00000000155/1-616 KFRIAEKGIV SETTCSLTEC FSLS---YVV VASAGREAVE FLLRIFLKMP bmy_19991T0/1-340 KFRIAEKDIV SETTCNLTEC FSLSPGTYVV VISAGREAVE FLLRIFLKMP BACU014582/1-709 KFTIAEKGIV SETTCNLTEC FSLSPGTYVV VVSAGREAVE FLLRIFLKMP 501 550 ENSP00000295055/1-669 DSDRHLSSHF NLR-MK---- -------GSP SEHGSQQSIF NRYAQQRLDI ENSBTAP00000041966/1-669 NSDRNLDGSL NLRALQ---- -------ASL PENGSQQSIF YKYAQQGLDI ENSTTRP00000000155/1-616 DSDRNLDDNL NLRPLQ---- -------AGR PEGS---SIF YRYAQQXX-X bmy_19991T0/1-340 DSDRNLDDNL NLRPLQ---- ---------- ---------- ---------V BACU014582/1-709 DSDRNLDDNL NLRPLQKFDV GYSSLDPGKS SRNGSQRSIF YKYAQQGLDI 551 600 ENSP00000295055/1-669 DATQLQGLLN QELLTGPPGD MFSLDECRSL VALMELKVNG RLDQEEFARL ENSBTAP00000041966/1-669 DATQLQSLLN REFLRGPPGD PFSLDECRSL VALMDLKVNG RLDQEEFSRL ENSTTRP00000000155/1-616 XXXXXXXXXX XXXXXXXPVD TSSLHECRST VALTDLKVNG RLDQEEFSRL bmy_19991T0/1-340 DTGAHTGFLL ---------- ---------- ---------- ---------- BACU014582/1-709 DATQVQRLLN QESLKGPPGD TFSLDEFRSM VALTD----- ---------- 601 650 ENSP00000295055/1-669 WKRLVHYQHV FQKVQTSPGV LLSSDLWKAI ENTDFLRGIF ISRELLHLVT ENSBTAP00000041966/1-669 WSRLVHCQSV FQNSPKNAGV FLSSDLWKAI RDTDFLAGIS ITSELLDLMK ENSTTRP00000000155/1-616 WSRLVHCQSV SQNSRKNSGV FPSSDLWKAI KDTDFLAGIP VTNEWLDLMR bmy_19991T0/1-340 ---FLPCQSV FQNSRKNSGV FPSLDLWKAI KDTDFLAGIS VTNERLDVMR BACU014582/1-709 --------SV FQNSWKNSGV FPSLDLWTAI KDTDFLAGIS VTTERLDVMR 651 700 ENSP00000295055/1-669 LRYSDSVGRV SFPSLVCFLM RLEAMAKTFR NLSKDGKGLY LTEME----- ENSBTAP00000041966/1-669 LRYSDSTGRV SFPSLVCLLM RLEAMAKAFQ NLSKDGKGLY LTEME----- ENSTTRP00000000155/1-616 LRYSDSTGRV SFPSLVCVLM RLEAMTKAFQ NLSKDGKGLY LTEME----- bmy_19991T0/1-340 LRYSDSTGRV SFPSLVCVLM RLEAVTKAFQ NLSKDGKGLY LTEME----- BACU014582/1-709 LRYSDSTGKV SFPSLVCVLM RLEAVTKAFQ NLSEDGKGLY LTEMEVRVWG 701 750 ENSP00000295055/1-669 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041966/1-669 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000155/1-616 ---------- ---------- ---------- ---------- ---------- bmy_19991T0/1-340 ---------- ---------- ---------- ---------- ---------- BACU014582/1-709 LPVGLRFWCW GEAEDDLQLR EGVPNAGEMP SVATVRIAGT CPQAWLSVGT 751 800 ENSP00000295055/1-669 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000041966/1-669 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000155/1-616 ---------- ---------- ---------- ---------- ---------- bmy_19991T0/1-340 ---------- ---------- ---------- ---------- ----TRYGPF BACU014582/1-709 SRVPVEINTG VMDGSDLPNA EAGLFANLKA SRQQREECEQ KRGTTRYGPF 801 850 ENSP00000295055/1-669 ---------- -W---MSLVM YN ENSBTAP00000041966/1-669 ---------- -W---MNLVM YN ENSTTRP00000000155/1-616 ---------- -W---MNLVM YN bmy_19991T0/1-340 HDHSDSTQSV EWGAGLRICS GY BACU014582/1-709 HDHSVSTQSV EWGAGLRICS GY